BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3039.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774557.1| dipeptide/oligopeptide/nickel ABC transporte... 442 e-122 ref|YP_004750982.1| ABC peptide transporter, inner membrane subu... 406 e-111 ref|YP_004313528.1| ABC-type transporter integral membrane subun... 295 5e-78 ref|YP_001862663.1| binding-protein-dependent transport systems ... 286 2e-75 ref|YP_553817.1| peptide ABC transporter inner membrane subunit ... 285 6e-75 >ref|YP_003774557.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ62649.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 280/296 (94%), Positives = 286/296 (96%), Gaps = 3/296 (1%) Query: 1 MKALHDSTGTEAGAPVAPAAAATAPVKRVRRHSTMAWIGMVIVGFWILMAILGPSISPYD 60 MKALHDSTG++A APA AA+AP KRVRRHSTMAWIGM IVGFWILMAILGPSISPYD Sbjct: 1 MKALHDSTGSQA---GAPAPAASAPAKRVRRHSTMAWIGMAIVGFWILMAILGPSISPYD 57 Query: 61 ATAIVDTDVFSGMSHKFLLGSDYLGRDMLSRILFGTRATIGLALLSTVVASLSGTAIALF 120 ATAIVDTDVFSGMSHKFLLGSDYLGRDMLSRILFGTRATIGLAL +TV+AS +GTAIALF Sbjct: 58 ATAIVDTDVFSGMSHKFLLGSDYLGRDMLSRILFGTRATIGLALAATVLASATGTAIALF 117 Query: 121 AAFSGGWRDAVISRALDALISIPSKMFALMMVATFGSSMFLLVLTAAITYMPGAYRIARS 180 AAFSGGWRDAVISRALDALISIPSKMFALMMVATFGSSM LLVLTAAITYMPGAYRIARS Sbjct: 118 AAFSGGWRDAVISRALDALISIPSKMFALMMVATFGSSMLLLVLTAAITYMPGAYRIARS 177 Query: 181 LAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSL 240 LAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSL Sbjct: 178 LAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSL 237 Query: 241 GVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 296 GVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE Sbjct: 238 GVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 293 >ref|YP_004750982.1| ABC peptide transporter, inner membrane subunit [Collimonas fungivorans Ter331] gb|AEK60159.1| ABC peptide transporter, inner membrane subunit [Collimonas fungivorans Ter331] Length = 289 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 257/296 (86%), Positives = 272/296 (91%), Gaps = 7/296 (2%) Query: 1 MKALHDSTGTEAGAPVAPAAAATAPVKRVRRHSTMAWIGMVIVGFWILMAILGPSISPYD 60 MKALHDS A A+ A+A K+ RHS MAWIGM IVGFW+LMAI+GP+ISPYD Sbjct: 1 MKALHDSA-------RAEASTASAAAKKPHRHSAMAWIGMGIVGFWLLMAIIGPTISPYD 53 Query: 61 ATAIVDTDVFSGMSHKFLLGSDYLGRDMLSRILFGTRATIGLALLSTVVASLSGTAIALF 120 ATAIVD DVFSGMS KFLLGSDYLGRDMLSRILFGTRATIGLAL +T++AS GTA+AL+ Sbjct: 54 ATAIVDVDVFSGMSRKFLLGSDYLGRDMLSRILFGTRATIGLALAATLLASSIGTAVALY 113 Query: 121 AAFSGGWRDAVISRALDALISIPSKMFALMMVATFGSSMFLLVLTAAITYMPGAYRIARS 180 AAF+GGWRDAVISRALDALISIPSKMFALMMVATFGSSM+LLV TAAITYMPGAYRIARS Sbjct: 114 AAFTGGWRDAVISRALDALISIPSKMFALMMVATFGSSMWLLVTTAAITYMPGAYRIARS 173 Query: 181 LAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSL 240 +AVNVQAMEYVQAARARGEGVWYIMT+EMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSL Sbjct: 174 VAVNVQAMEYVQAARARGEGVWYIMTMEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSL 233 Query: 241 GVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRAAKE 296 GVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLR KRAAKE Sbjct: 234 GVQPPDADWGSLVRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRGKRAAKE 289 >ref|YP_004313528.1| ABC-type transporter integral membrane subunit [Marinomonas mediterranea MMB-1] gb|ADZ91692.1| ABC-type transporter, integral membrane subunit [Marinomonas mediterranea MMB-1] Length = 284 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 170/256 (66%), Positives = 208/256 (81%) Query: 36 AWIGMVIVGFWILMAILGPSISPYDATAIVDTDVFSGMSHKFLLGSDYLGRDMLSRILFG 95 A +G +VGFW++MA++GP +SP+DA A V DVF M+ +F LGSDYLGRDMLSRIL G Sbjct: 22 AVVGFSLVGFWLVMAVIGPFVSPHDANAFVSYDVFGPMTSEFPLGSDYLGRDMLSRILHG 81 Query: 96 TRATIGLALLSTVVASLSGTAIALFAAFSGGWRDAVISRALDALISIPSKMFALMMVATF 155 T TIG+AL++TV A ++G L AA + GW DA ISR DALISIPSKMFAL+MVA+F Sbjct: 82 TPYTIGVALMATVSACVAGVVSGLIAAANSGWIDATISRTQDALISIPSKMFALIMVASF 141 Query: 156 GSSMFLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQAARARGEGVWYIMTVEMLPNMIR 215 GSS+ LL++TAAI YMPG++RIARSLAVNV ++++Q AR RGE YI+ E+LPNM R Sbjct: 142 GSSVPLLIITAAIAYMPGSFRIARSLAVNVMTLDFIQVARLRGESTPYIIFKEVLPNMFR 201 Query: 216 PVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSLVRENISGLGEGALAVIMPALAIA 275 PVL DFGLRFV++VLLLS +SFL LG+QPP+ADWGSLVRENI GLGEGA AV+ PA+AIA Sbjct: 202 PVLTDFGLRFVFIVLLLSSMSFLGLGIQPPEADWGSLVRENILGLGEGAPAVVAPAVAIA 261 Query: 276 SLTIGVNLLIDNLRSK 291 +LTIGVNLLID+L K Sbjct: 262 TLTIGVNLLIDSLGVK 277 >ref|YP_001862663.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC75617.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 317 Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 170/281 (60%), Positives = 217/281 (77%), Gaps = 1/281 (0%) Query: 14 APVAPAAAATAPVKR-VRRHSTMAWIGMVIVGFWILMAILGPSISPYDATAIVDTDVFSG 72 APV A ++R V R S + IG+ IV FW+ +A +GP ++PY A+ T++F Sbjct: 30 APVETQVAKRGSLRRLVSRFSLLGLIGLTIVVFWLCIAFIGPLVAPYKGGAVTSTEIFGV 89 Query: 73 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALLSTVVASLSGTAIALFAAFSGGWRDAVI 132 S LG+DYLGRDMLSR+L+GT+ T+GLAL +TV+AS GT L AA SG W D ++ Sbjct: 90 YSAAHPLGTDYLGRDMLSRVLYGTQYTVGLALAATVLASCIGTFFGLVAAVSGRWVDEIL 149 Query: 133 SRALDALISIPSKMFALMMVATFGSSMFLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 192 SR DALISIPSK+ AL+++A FGSS+ +L+ AA+ Y+PGA+RI+RSLAVN+ +EYVQ Sbjct: 150 SRLFDALISIPSKVLALVVIAAFGSSVPMLITVAALAYIPGAFRISRSLAVNLMTLEYVQ 209 Query: 193 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 252 A+ARGEG++YI VE+LPNMI P+LADFGLRFV++VLLLSGLSFL LGVQPP+ADWGSL Sbjct: 210 VAKARGEGLFYIARVEVLPNMIHPMLADFGLRFVFIVLLLSGLSFLGLGVQPPNADWGSL 269 Query: 253 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSKRA 293 VRENI GL EGA AV+MPA+AIA+LT+GVNLLID+LR A Sbjct: 270 VRENIGGLAEGAPAVLMPAVAIATLTVGVNLLIDSLRRHGA 310 >ref|YP_553817.1| peptide ABC transporter inner membrane subunit [Burkholderia xenovorans LB400] gb|ABE34467.1| ABC peptide transporter, inner membrane subunit [Burkholderia xenovorans LB400] Length = 316 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 172/279 (61%), Positives = 217/279 (77%), Gaps = 1/279 (0%) Query: 14 APVAPAAAATAPVKR-VRRHSTMAWIGMVIVGFWILMAILGPSISPYDATAIVDTDVFSG 72 AP AA KR V R S + IG+++V FW+L+A +GP ++PY A+ T++F Sbjct: 31 APPEAAALKHGMFKRLVHRFSVLGLIGLLMVAFWLLVAFIGPLVAPYKGGALTSTEIFGR 90 Query: 73 MSHKFLLGSDYLGRDMLSRILFGTRATIGLALLSTVVASLSGTAIALFAAFSGGWRDAVI 132 S + LG+DYLGRDMLSRIL+G R T+GLAL + V+AS+ GT L AA SG W D ++ Sbjct: 91 YSAAYPLGTDYLGRDMLSRILYGARYTVGLALAAAVLASVIGTFFGLLAAVSGRWVDEIL 150 Query: 133 SRALDALISIPSKMFALMMVATFGSSMFLLVLTAAITYMPGAYRIARSLAVNVQAMEYVQ 192 SR DALISIPSK+ AL+++A FGSS+ +L AA+ Y+PGA+RI+RSLAVN+ +EYVQ Sbjct: 151 SRLFDALISIPSKVLALVVIAAFGSSIPMLTTVAAVAYIPGAFRISRSLAVNLMGLEYVQ 210 Query: 193 AARARGEGVWYIMTVEMLPNMIRPVLADFGLRFVYVVLLLSGLSFLSLGVQPPDADWGSL 252 ARARGEG++YI VE+LPNMI P+LADFGLRFV++VLLLSGLSFL LGVQPP+ADWGSL Sbjct: 211 VARARGEGIFYIARVEVLPNMIHPMLADFGLRFVFIVLLLSGLSFLGLGVQPPNADWGSL 270 Query: 253 VRENISGLGEGALAVIMPALAIASLTIGVNLLIDNLRSK 291 VRENI GL EGA AV+MPA+AIA+LTIG+NLLIDNLR + Sbjct: 271 VRENIGGLSEGAPAVLMPAVAIATLTIGMNLLIDNLRRR 309