BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3036.p (528 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774560.1| glycine/D-amino acid oxidase [Herbaspirillum... 781 0.0 ref|YP_004750985.1| AgaE protein [Collimonas fungivorans Ter331]... 715 0.0 ref|YP_003608019.1| FAD dependent oxidoreductase [Burkholderia s... 658 0.0 ref|YP_778239.1| FAD dependent oxidoreductase [Burkholderia ambi... 652 0.0 ref|ZP_04943858.1| FAD dependent oxidoreductase [Burkholderia ce... 650 0.0 >ref|YP_003774560.1| glycine/D-amino acid oxidase [Herbaspirillum seropedicae SmR1] gb|ADJ62652.1| Glycine/D-amino acid oxidases (deaminating) protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 429/441 (97%), Positives = 435/441 (98%) Query: 88 MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYYLAKRGISVAVIEKGRIGAEQSSRNW 147 MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAY+LAKRGISVAV+EKGRIGAEQSSRNW Sbjct: 1 MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYFLAKRGISVAVVEKGRIGAEQSSRNW 60 Query: 148 GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFTRCGLLYLSNDDEEIARWAAWGDF 207 GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGF RCGLLYLSND+EEIARWAAWGDF Sbjct: 61 GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFNRCGLLYLSNDEEEIARWAAWGDF 120 Query: 208 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI 267 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI Sbjct: 121 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI 180 Query: 268 QNCAARGIETEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 327 Q CAARGI+TEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS Sbjct: 181 QQCAARGIDTEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 240 Query: 328 VAPMEQPLPGALFTSGVAVTRRSNGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 387 VAPME PLPGAL+TSGVAVTRRS+GSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS Sbjct: 241 VAPMEAPLPGALYTSGVAVTRRSDGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 300 Query: 388 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPVSIRATHRRAVELLPQLAQAK 447 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADP SIRATHRRAVELLPQLAQAK Sbjct: 301 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPASIRATHRRAVELLPQLAQAK 360 Query: 448 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGVEPIV 507 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASG PIV Sbjct: 361 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGAAPIV 420 Query: 508 DPRPYHPNRFSDSSWGKVADF 528 DPRPYHPNRFSDSSWGKVADF Sbjct: 421 DPRPYHPNRFSDSSWGKVADF 441 >ref|YP_004750985.1| AgaE protein [Collimonas fungivorans Ter331] gb|AEK60162.1| AgaE protein [Collimonas fungivorans Ter331] Length = 443 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 384/441 (87%), Positives = 415/441 (94%) Query: 88 MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYYLAKRGISVAVIEKGRIGAEQSSRNW 147 MSPPL VQ+P+IPPA+ADVVVIGGGIIGIFTAYYLA+RG+SV V+EKGR+GAEQSSRNW Sbjct: 3 MSPPLNLVQTPSIPPATADVVVIGGGIIGIFTAYYLARRGVSVVVVEKGRVGAEQSSRNW 62 Query: 148 GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFTRCGLLYLSNDDEEIARWAAWGDF 207 GWCRQQNRDARELPMATKSIDLWEQFSAE+GED GFTRCGLLYLSNDDEE+ARWA+WG F Sbjct: 63 GWCRQQNRDARELPMATKSIDLWEQFSAESGEDAGFTRCGLLYLSNDDEELARWASWGKF 122 Query: 208 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI 267 AKTAGVTT+MLDS+QAAERGHATGRAWKGGVFSPTDGTADP KAAPAVARA+MKLGG VI Sbjct: 123 AKTAGVTTHMLDSRQAAERGHATGRAWKGGVFSPTDGTADPVKAAPAVARAVMKLGGSVI 182 Query: 268 QNCAARGIETEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 327 Q CAARGIE E GRV+GV+TEAGVIKT+ V+AGGAWASSFC QL IRFPQASVRQSIMS Sbjct: 183 QQCAARGIEMEAGRVAGVVTEAGVIKTRTVVLAGGAWASSFCRQLDIRFPQASVRQSIMS 242 Query: 328 VAPMEQPLPGALFTSGVAVTRRSNGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 387 VAP++QPLPGALFTSGVA TRRS+GSYALAISGRARVDPT QFLRFSPQFLPMFAKRWRS Sbjct: 243 VAPIDQPLPGALFTSGVAATRRSDGSYALAISGRARVDPTGQFLRFSPQFLPMFAKRWRS 302 Query: 388 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPVSIRATHRRAVELLPQLAQAK 447 LSPGGLEA RSGHET+SRWR+DAPTPMERMRILD ADP++IRATHRRA+ELLP+L A+ Sbjct: 303 LSPGGLEALRSGHETMSRWRLDAPTPMERMRILDPKADPMAIRATHRRAIELLPELRNAR 362 Query: 448 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGVEPIV 507 VTHTWAGYVDSTPDGVPGIGE PQ PGLILAAGFSGHGFGIGPGAGHLIADLA+G EP+V Sbjct: 363 VTHTWAGYVDSTPDGVPGIGETPQVPGLILAAGFSGHGFGIGPGAGHLIADLATGAEPLV 422 Query: 508 DPRPYHPNRFSDSSWGKVADF 528 DPRPYHP RF+ S+WGKVADF Sbjct: 423 DPRPYHPGRFAGSAWGKVADF 443 >ref|YP_003608019.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1002] gb|ADG18508.1| FAD dependent oxidoreductase [Burkholderia sp. CCGE1002] Length = 441 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 352/441 (79%), Positives = 399/441 (90%) Query: 88 MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYYLAKRGISVAVIEKGRIGAEQSSRNW 147 MSPPL +Q+ P +ADVVVIGGGIIG+F AYYLA+RGISVA++EKGRIGAEQSSRNW Sbjct: 1 MSPPLNHIQTSPTLPTAADVVVIGGGIIGVFAAYYLARRGISVALVEKGRIGAEQSSRNW 60 Query: 148 GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFTRCGLLYLSNDDEEIARWAAWGDF 207 GWCRQQNRDARELPMA+KS+DLWE+F+AE+GEDTGF RCGLLYLSNDD E++RW++WGDF Sbjct: 61 GWCRQQNRDARELPMASKSLDLWERFAAESGEDTGFHRCGLLYLSNDDAELSRWSSWGDF 120 Query: 208 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI 267 AKTAGVTT MLDS+QAAERG ATGRAWKGGVFSP+DGTADPGKAAPAVA A+MKLGG V Sbjct: 121 AKTAGVTTCMLDSRQAAERGQATGRAWKGGVFSPSDGTADPGKAAPAVAAALMKLGGSVH 180 Query: 268 QNCAARGIETEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 327 Q+CAARG+E EGGRVSGV+TEAGVIKT+ AV+AGGAWASSFC QLGIRFPQASVRQSI+S Sbjct: 181 QHCAARGLELEGGRVSGVVTEAGVIKTRTAVLAGGAWASSFCRQLGIRFPQASVRQSILS 240 Query: 328 VAPMEQPLPGALFTSGVAVTRRSNGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 387 V+P+E LP ALFT+GV+VTRR++G YALAISGRARVD T QF+RF+PQF+PMFAKRWR+ Sbjct: 241 VSPVEHRLPDALFTAGVSVTRRNDGRYALAISGRARVDVTPQFMRFAPQFVPMFAKRWRN 300 Query: 388 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPVSIRATHRRAVELLPQLAQAK 447 L PGGLE R GHETL RWR+DAPTPMER+RILD DP +++ THRRAVELLP L +AK Sbjct: 301 LLPGGLEGIRGGHETLRRWRLDAPTPMERVRILDPKPDPAAVKETHRRAVELLPDLREAK 360 Query: 448 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGVEPIV 507 +TH WAG+VDSTPDGVPGIGE+P TPGLILAAGFSGHGFGIGPGAGHLIADLA+G EPIV Sbjct: 361 ITHAWAGFVDSTPDGVPGIGEVPGTPGLILAAGFSGHGFGIGPGAGHLIADLATGAEPIV 420 Query: 508 DPRPYHPNRFSDSSWGKVADF 528 DP PY P+RF DS+WGKVADF Sbjct: 421 DPIPYQPSRFDDSAWGKVADF 441 >ref|YP_778239.1| FAD dependent oxidoreductase [Burkholderia ambifaria AMMD] gb|ABI91905.1| FAD dependent oxidoreductase [Burkholderia ambifaria AMMD] Length = 441 Score = 652 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 351/441 (79%), Positives = 397/441 (90%) Query: 88 MSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYYLAKRGISVAVIEKGRIGAEQSSRNW 147 MSPPL +++ PPASADVVVIGGGIIG+FTAYYLA+RG+SVA++EKGRIGAEQSSRNW Sbjct: 1 MSPPLRHIETSPTPPASADVVVIGGGIIGVFTAYYLARRGVSVALVEKGRIGAEQSSRNW 60 Query: 148 GWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFTRCGLLYLSNDDEEIARWAAWGDF 207 GWCRQQNRDARELPMA+KSIDLWE+F+AE+GEDTGF RCGLLYLSNDDEE++RWA+WG+F Sbjct: 61 GWCRQQNRDARELPMASKSIDLWERFAAESGEDTGFHRCGLLYLSNDDEELSRWASWGEF 120 Query: 208 AKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKLGGHVI 267 AKTAGVTTYMLDSKQAAERG ATGR WKGGVFSPTDGTADPGKAAPAVA A++KLGG V Sbjct: 121 AKTAGVTTYMLDSKQAAERGRATGRQWKGGVFSPTDGTADPGKAAPAVAAALIKLGGSVH 180 Query: 268 QNCAARGIETEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVRQSIMS 327 Q+CAARGIE EGGRV+GV+TEAGVIKT+ VMAGGAWASSFC QLGIRFPQAS+RQSI+S Sbjct: 181 QHCAARGIELEGGRVAGVVTEAGVIKTRTVVMAGGAWASSFCRQLGIRFPQASIRQSILS 240 Query: 328 VAPMEQPLPGALFTSGVAVTRRSNGSYALAISGRARVDPTMQFLRFSPQFLPMFAKRWRS 387 V+P+E PLP A++TSGV++TRRS+G YALAISGRARVD T QFLRF+PQF+PMFAKRWR+ Sbjct: 241 VSPVETPLPDAMYTSGVSITRRSDGRYALAISGRARVDLTPQFLRFAPQFVPMFAKRWRN 300 Query: 388 LSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPVSIRATHRRAVELLPQLAQAK 447 L PGGLE R GHETL RWR+DAPTPME +RILD D ++ T+RRA ELLP+L AK Sbjct: 301 LLPGGLEGVRGGHETLKRWRLDAPTPMEAVRILDPKPDMPTVTETYRRAAELLPELRDAK 360 Query: 448 VTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASGVEPIV 507 +TH WAG+VDSTPDGVPGIGE+P PGLILAAGFSGHGFGIGPGAGHLIADLASG +P V Sbjct: 361 ITHAWAGFVDSTPDGVPGIGEVPGVPGLILAAGFSGHGFGIGPGAGHLIADLASGAQPFV 420 Query: 508 DPRPYHPNRFSDSSWGKVADF 528 DP PY P RFS+S+WGKVADF Sbjct: 421 DPAPYRPGRFSESAWGKVADF 441 >ref|ZP_04943858.1| FAD dependent oxidoreductase [Burkholderia cenocepacia PC184] gb|EAY67029.1| FAD dependent oxidoreductase [Burkholderia cenocepacia PC184] Length = 519 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 350/446 (78%), Positives = 400/446 (89%) Query: 83 REESKMSPPLVQVQSPTIPPASADVVVIGGGIIGIFTAYYLAKRGISVAVIEKGRIGAEQ 142 R MSPPL +++ + PPA+ADVVVIGGGIIG+FTAYYLA+RG+SVA++EKGRIGAEQ Sbjct: 74 RTRLSMSPPLRHIETLSTPPAAADVVVIGGGIIGVFTAYYLARRGLSVALVEKGRIGAEQ 133 Query: 143 SSRNWGWCRQQNRDARELPMATKSIDLWEQFSAETGEDTGFTRCGLLYLSNDDEEIARWA 202 SSRNWGWCRQQNRDARELPMA+KSIDLWE+F+AE+GEDTGF RCGLLYLSND+ E++RWA Sbjct: 134 SSRNWGWCRQQNRDARELPMASKSIDLWERFAAESGEDTGFHRCGLLYLSNDEAELSRWA 193 Query: 203 AWGDFAKTAGVTTYMLDSKQAAERGHATGRAWKGGVFSPTDGTADPGKAAPAVARAIMKL 262 +WG+FAKTAGVTTYMLDSKQAAERG ATGR WKGGVFSPTDGTADPGKAAPAVA A++KL Sbjct: 194 SWGEFAKTAGVTTYMLDSKQAAERGRATGRQWKGGVFSPTDGTADPGKAAPAVAAALIKL 253 Query: 263 GGHVIQNCAARGIETEGGRVSGVITEAGVIKTKVAVMAGGAWASSFCHQLGIRFPQASVR 322 GG V Q+CAARGIE EGGRV+GV+TEAGVIKT+ AVMAGGAWASSFC QLGIRFPQAS+R Sbjct: 254 GGSVHQHCAARGIELEGGRVAGVVTEAGVIKTRTAVMAGGAWASSFCRQLGIRFPQASIR 313 Query: 323 QSIMSVAPMEQPLPGALFTSGVAVTRRSNGSYALAISGRARVDPTMQFLRFSPQFLPMFA 382 QSI+SV+P++ PLPGA++TSGV++TRR +G YALAISGRARVDPT QFLRF+PQF+PMFA Sbjct: 314 QSILSVSPVDTPLPGAMYTSGVSITRRCDGRYALAISGRARVDPTPQFLRFAPQFVPMFA 373 Query: 383 KRWRSLSPGGLEAWRSGHETLSRWRMDAPTPMERMRILDASADPVSIRATHRRAVELLPQ 442 KRWR+L PGGLE R GHETL RWR+DAPTPME +RILD D ++ T+RRA ELLP+ Sbjct: 374 KRWRNLLPGGLEGVRGGHETLKRWRLDAPTPMEAVRILDPKPDMPTVAETYRRASELLPE 433 Query: 443 LAQAKVTHTWAGYVDSTPDGVPGIGELPQTPGLILAAGFSGHGFGIGPGAGHLIADLASG 502 L +A +TH WAG+VDSTPDGVPGIGE+P PGLILAAGFSGHGFGIGPGAGHLIADLASG Sbjct: 434 LREATITHAWAGFVDSTPDGVPGIGEVPGVPGLILAAGFSGHGFGIGPGAGHLIADLASG 493 Query: 503 VEPIVDPRPYHPNRFSDSSWGKVADF 528 EP VDP PY P RFS+S+WGKVADF Sbjct: 494 AEPFVDPTPYRPGRFSESAWGKVADF 519