BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3035.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774561.1| LysR family transcription regulator protein ... 526 e-147 ref|ZP_04948753.1| Transcriptional regulator [Burkholderia dolos... 427 e-117 ref|YP_003911096.1| LysR family transcriptional regulator [Burkh... 423 e-116 ref|YP_001889616.1| LysR family transcriptional regulator [Burkh... 417 e-114 ref|YP_004231098.1| LysR family transcriptional regulator [Burkh... 410 e-112 >ref|YP_003774561.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62653.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 279/314 (88%), Positives = 299/314 (95%), Gaps = 3/314 (0%) Query: 12 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRVGVRVANRATRGIALTD 71 MLQLDDMQLLRALGS++SLA AARLLDLTPPAVTVRLQRIEDR+GVR+ANRA RG ALTD Sbjct: 1 MLQLDDMQLLRALGSSASLAGAARLLDLTPPAVTVRLQRIEDRIGVRLANRAARGFALTD 60 Query: 72 EGQRLVQEAMDILERIESITASVSHESDRGGQAS---VSGTLRVVAPFGFGRRYVAPLIR 128 EGQRLVQEA DILERIE+ITASVS ESDRG AS VSG+LRVVAPFGFGRRYVAPL+R Sbjct: 61 EGQRLVQEATDILERIEAITASVSRESDRGEHASLANVSGSLRVVAPFGFGRRYVAPLVR 120 Query: 129 DLHRSHPKLSISLLLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCAAPVLAK 188 DLHR+HP+L+ISLLLAESPLAA++GADAIISIGRVKGSSWVGHFLAPN RFLCA+P LA+ Sbjct: 121 DLHRNHPRLAISLLLAESPLAAASGADAIISIGRVKGSSWVGHFLAPNERFLCASPALAR 180 Query: 189 RMQRIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTI 248 RM R +HPS+LA+YPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTI Sbjct: 181 RMNRARHPSELADYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTI 240 Query: 249 TRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFL 308 TRDWALDGEGFVARSEWDCAHL+ DGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFL Sbjct: 241 TRDWALDGEGFVARSEWDCAHLLTDGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFL 300 Query: 309 DAAKRAFQPVPWRR 322 +AAKRAFQP+PWRR Sbjct: 301 EAAKRAFQPIPWRR 314 >ref|ZP_04948753.1| Transcriptional regulator [Burkholderia dolosa AUO158] gb|EAY71924.1| Transcriptional regulator [Burkholderia dolosa AUO158] Length = 322 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 231/318 (72%), Positives = 268/318 (84%), Gaps = 5/318 (1%) Query: 4 QFTIKRFLMLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRVGVRVANRA 63 Q +K LMLQL+DMQLLRALG++ SLAAAARLLDLTPPA TVRLQRIE+R+G+RVA RA Sbjct: 9 QRVVKEVLMLQLEDMQLLRALGASQSLAAAARLLDLTPPAATVRLQRIEERLGIRVATRA 68 Query: 64 TRGIALTDEGQRLVQEAMDILERIESITASVSHESDRGGQASVSGTLRVVAPFGFGRRYV 123 RGIALTDEGQ+LVQEA++ILERIESI + VS ES A V G LRVVAPFGFGR YV Sbjct: 69 ARGIALTDEGQQLVQEAIEILERIESIPSRVSGES-----AGVGGHLRVVAPFGFGREYV 123 Query: 124 APLIRDLHRSHPKLSISLLLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCAA 183 APLIRDLHR+HP L+ISL+L ESPLAA++GADA+ISIG +KGSSWVGHFLAPN RFLCA+ Sbjct: 124 APLIRDLHRAHPHLAISLVLVESPLAAASGADAVISIGHIKGSSWVGHFLAPNERFLCAS 183 Query: 184 PVLAKRMQRIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSS 243 P LA+R+ + HP++L Y YLSLRENDDD++RLRF D+ G+R GKA+TV+L ALSS Sbjct: 184 PALARRLSALTHPAELTRYDYLSLRENDDDVTRLRFIQSDATGKRVGKAVTVRLRSALSS 243 Query: 244 NDGTITRDWALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTLR 303 NDGT+ RDWA+DG G VARSEWDCA L+A G L RVLP WQL+PAPI+AL P R GLT+R Sbjct: 244 NDGTVVRDWAVDGLGVVARSEWDCARLIAKGKLVRVLPSWQLEPAPIVALTPTRHGLTIR 303 Query: 304 QRVFLDAAKRAFQPVPWR 321 QRVFL+AAKRAF PVPWR Sbjct: 304 QRVFLEAAKRAFDPVPWR 321 >ref|YP_003911096.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN61805.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1003] Length = 310 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 221/310 (71%), Positives = 265/310 (85%), Gaps = 5/310 (1%) Query: 12 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRVGVRVANRATRGIALTD 71 MLQL+DMQLLRALG + SLAA ARLLDLTPPAVTVRLQRIE R+G+++A RA RGI+LTD Sbjct: 1 MLQLEDMQLLRALGGSRSLAATARLLDLTPPAVTVRLQRIEQRMGMQLATRAARGISLTD 60 Query: 72 EGQRLVQEAMDILERIESITASVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLIRDLH 131 EGQR+VQEA++ILERIESI + VS ES + SG LRVVAPFGFGR YVAPL+RDL Sbjct: 61 EGQRIVQEAIEILERIESIASRVSGES-----SGASGHLRVVAPFGFGREYVAPLVRDLR 115 Query: 132 RSHPKLSISLLLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCAAPVLAKRMQ 191 RSHP L+ISL+L ESPLAA++GADA+ISIGRVKGSSWVGHFLAPN RFLCA+P LA+ + Sbjct: 116 RSHPNLAISLVLVESPLAAASGADAVISIGRVKGSSWVGHFLAPNERFLCASPALARSLS 175 Query: 192 RIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTITRD 251 R+KHPS+L YL+LREND+D++RLRFT D+ G+R +++T++L+ ALSSNDGT+ RD Sbjct: 176 RLKHPSELNRCEYLALRENDEDVTRLRFTQRDAVGKRATRSVTIRLDSALSSNDGTVVRD 235 Query: 252 WALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFLDAA 311 WA+DG G VARSEWDCA L+A+G L+RVLP W+L+PAPIMAL P RQ LT+RQRVFL+AA Sbjct: 236 WAVDGLGVVARSEWDCARLIAEGKLRRVLPAWRLEPAPIMALTPTRQNLTIRQRVFLEAA 295 Query: 312 KRAFQPVPWR 321 KRAF PVPWR Sbjct: 296 KRAFDPVPWR 305 >ref|YP_001889616.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD20245.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 306 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 224/311 (72%), Positives = 270/311 (86%), Gaps = 5/311 (1%) Query: 12 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRVGVRVANRATRGIALTD 71 ML+L+DMQLLRALG++ SLAAAARLLDLTPPAVTVRLQRIE+R+GVR+A RA RGI+LTD Sbjct: 1 MLRLEDMQLLRALGASQSLAAAARLLDLTPPAVTVRLQRIEERMGVRLATRAARGISLTD 60 Query: 72 EGQRLVQEAMDILERIESITASVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLIRDLH 131 EGQRL QEA+DILERIESI + +S E+ A VSG LRVVAPFGFGR YVAPL+RDLH Sbjct: 61 EGQRLTQEAIDILERIESIPSRISGEA-----AGVSGHLRVVAPFGFGREYVAPLVRDLH 115 Query: 132 RSHPKLSISLLLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCAAPVLAKRMQ 191 RSHP L+ISL+L ESPLAA++GAD +ISIG +K SSWVGHFLAPN RFLCA+P LA+ + Sbjct: 116 RSHPNLAISLILVESPLAAASGADVVISIGHIKRSSWVGHFLAPNDRFLCASPALARGLS 175 Query: 192 RIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTITRD 251 ++KHPS+L ++ YL+LREND+D++RLRFT D+AG+RT KA+ V+L+ ALSSNDGT+ RD Sbjct: 176 KLKHPSELTQHAYLTLRENDEDVTRLRFTQHDAAGKRTSKAVAVRLSSALSSNDGTVVRD 235 Query: 252 WALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFLDAA 311 WALDG G VARSEWDCA LVA+G LKRVLP W+L+PAP++AL P RQGLT+RQRVFL+AA Sbjct: 236 WALDGLGVVARSEWDCARLVAEGKLKRVLPAWRLEPAPVIALTPTRQGLTIRQRVFLEAA 295 Query: 312 KRAFQPVPWRR 322 K+AF P PWR+ Sbjct: 296 KQAFDPAPWRK 306 >ref|YP_004231098.1| LysR family transcriptional regulator [Burkholderia sp. CCGE1001] gb|ADX58038.1| transcriptional regulator, LysR family [Burkholderia sp. CCGE1001] Length = 306 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 221/310 (71%), Positives = 262/310 (84%), Gaps = 5/310 (1%) Query: 12 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRVGVRVANRATRGIALTD 71 MLQL+DMQLLRALG + SLAAAARLLDLTPPAVTVRLQRIE+R+ VR+A RA RGI+LTD Sbjct: 1 MLQLEDMQLLRALGVSQSLAAAARLLDLTPPAVTVRLQRIEERMAVRLATRAARGISLTD 60 Query: 72 EGQRLVQEAMDILERIESITASVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLIRDLH 131 EGQRLVQEA++ILERIES+ + VS ES VSG LRVVAPFGFGR Y+APL+RDL Sbjct: 61 EGQRLVQEAIEILERIESLPSRVSGESH-----GVSGHLRVVAPFGFGRAYIAPLVRDLR 115 Query: 132 RSHPKLSISLLLAESPLAASTGADAIISIGRVKGSSWVGHFLAPNARFLCAAPVLAKRMQ 191 RSHP L+ISL+L ESPLAA++GAD ISIG+VK SSW+GHFLAPN R LCA+P LA+ + Sbjct: 116 RSHPHLTISLILVESPLAAASGADVAISIGQVKASSWIGHFLAPNERVLCASPALARGLS 175 Query: 192 RIKHPSDLAEYPYLSLRENDDDLSRLRFTPVDSAGRRTGKALTVKLNGALSSNDGTITRD 251 ++KHPS+L+ YL+LREND+D++RLRF +D+AGRR K +TV+LNGALSSNDGT+ RD Sbjct: 176 KLKHPSELSRCEYLTLRENDEDVTRLRFIQLDAAGRRVSKPVTVRLNGALSSNDGTVVRD 235 Query: 252 WALDGEGFVARSEWDCAHLVADGSLKRVLPGWQLDPAPIMALLPGRQGLTLRQRVFLDAA 311 WALDG G ARSEWDCAHL+A G L+RVLP W L+PAP+MAL+P R GLT+RQR FLDAA Sbjct: 236 WALDGLGVAARSEWDCAHLIARGKLRRVLPAWHLEPAPVMALVPTRHGLTIRQRAFLDAA 295 Query: 312 KRAFQPVPWR 321 KRAF P+PWR Sbjct: 296 KRAFDPIPWR 305