BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3034.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774562.1| translation initiation inhibitor protein [He...   198   2e-49
ref|ZP_04948754.1| hypothetical protein BDAG_04777 [Burkholderia...   186   1e-45
ref|YP_001889615.1| endoribonuclease L-PSP [Burkholderia phytofi...   182   2e-44
ref|ZP_06842873.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-...   172   2e-41
ref|YP_560097.1| hypothetical protein Bxe_A0900 [Burkholderia xe...   169   1e-40

>ref|YP_003774562.1| translation initiation inhibitor protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62654.1| translation initiation inhibitor, yjgF family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score =  198 bits (503), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/128 (85%), Positives = 117/128 (91%)

Query: 8   AHTAPVTLNPTGLATPGGHYSHVAIGNGMVFISGQLPIDASGHKLTEASFEMQALQVLAN 67
           A T PVT NP GLATPGGHYSHVA GNGM FISGQLPIDA G+KL EASF++QA QVLAN
Sbjct: 11  AATYPVTHNPAGLATPGGHYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLAN 70

Query: 68  VEAALAGAGSDIGKLLQVRIYLTDVAHWPAFNEIYARWAGSARPARAVVPVPALHFGLQV 127
           VEAALAG GS+IGKLLQVR+YLTDVAHWPAFN++YA WAGSARPARAVVPVPALHFGLQ+
Sbjct: 71  VEAALAGVGSEIGKLLQVRVYLTDVAHWPAFNDLYAAWAGSARPARAVVPVPALHFGLQI 130

Query: 128 EVEATALL 135
           EVEATALL
Sbjct: 131 EVEATALL 138


>ref|ZP_04948754.1| hypothetical protein BDAG_04777 [Burkholderia dolosa AUO158]
 gb|EAY71925.1| hypothetical protein BDAG_04777 [Burkholderia dolosa AUO158]
          Length = 166

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/133 (71%), Positives = 111/133 (83%), Gaps = 2/133 (1%)

Query: 4   MNNNAHTA--PVTLNPTGLATPGGHYSHVAIGNGMVFISGQLPIDASGHKLTEASFEMQA 61
           M+   H A  P TLNP GLATPGGHYSHV+I NG++F+SGQLPIDA+G KL++  F+ QA
Sbjct: 33  MDQYRHDAAHPRTLNPAGLATPGGHYSHVSIANGLIFVSGQLPIDATGRKLSDRPFDEQA 92

Query: 62  LQVLANVEAALAGAGSDIGKLLQVRIYLTDVAHWPAFNEIYARWAGSARPARAVVPVPAL 121
            QVLANV  ALAGAGSD+ KL+QVR Y+ DVAHWP+FNEIYARWA  A+PARAVVPVPAL
Sbjct: 93  EQVLANVACALAGAGSDVTKLVQVRAYIVDVAHWPSFNEIYARWAADAKPARAVVPVPAL 152

Query: 122 HFGLQVEVEATAL 134
           HFGL++EVEA AL
Sbjct: 153 HFGLKIEVEAVAL 165


>ref|YP_001889615.1| endoribonuclease L-PSP [Burkholderia phytofirmans PsJN]
 gb|ACD20244.1| Endoribonuclease L-PSP [Burkholderia phytofirmans PsJN]
          Length = 134

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 87/122 (71%), Positives = 103/122 (84%)

Query: 12  PVTLNPTGLATPGGHYSHVAIGNGMVFISGQLPIDASGHKLTEASFEMQALQVLANVEAA 71
           P T+NP GLA PGGHYSHV+I NGMVF+SGQLPID +G KLT+  FE QA QVLAN+  A
Sbjct: 11  PRTINPEGLAPPGGHYSHVSIANGMVFVSGQLPIDPTGRKLTDQPFEAQAEQVLANLATA 70

Query: 72  LAGAGSDIGKLLQVRIYLTDVAHWPAFNEIYARWAGSARPARAVVPVPALHFGLQVEVEA 131
           LAGAGSD+ KL+QVR+Y+ D+ +W  FNEIYARW G+A+PARAVVPVPALHFGL++EVEA
Sbjct: 71  LAGAGSDVTKLVQVRVYIVDIEYWATFNEIYARWTGAAKPARAVVPVPALHFGLKIEVEA 130

Query: 132 TA 133
            A
Sbjct: 131 VA 132


>ref|ZP_06842873.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-1]
 gb|EFG69597.1| Endoribonuclease L-PSP [Burkholderia sp. Ch1-1]
          Length = 137

 Score =  172 bits (436), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/124 (69%), Positives = 103/124 (83%)

Query: 12  PVTLNPTGLATPGGHYSHVAIGNGMVFISGQLPIDASGHKLTEASFEMQALQVLANVEAA 71
           P T NP  L+ PGGHYSHVA+ NG VF+SGQLPI   G KL+EASFE+QA QVLANV+AA
Sbjct: 11  PRTENPATLSKPGGHYSHVAVANGFVFVSGQLPITPQGDKLSEASFEVQAEQVLANVQAA 70

Query: 72  LAGAGSDIGKLLQVRIYLTDVAHWPAFNEIYARWAGSARPARAVVPVPALHFGLQVEVEA 131
           L GAGS + +L+QVR+Y+ DV HW +FN+IYARWAG ARPARAVVPVP LH+G ++EVEA
Sbjct: 71  LEGAGSSVAQLVQVRVYIVDVEHWMSFNQIYARWAGEARPARAVVPVPQLHYGFRIEVEA 130

Query: 132 TALL 135
           TAL+
Sbjct: 131 TALV 134


>ref|YP_560097.1| hypothetical protein Bxe_A0900 [Burkholderia xenovorans LB400]
 gb|ABE32045.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
          Length = 134

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/124 (69%), Positives = 102/124 (82%)

Query: 12  PVTLNPTGLATPGGHYSHVAIGNGMVFISGQLPIDASGHKLTEASFEMQALQVLANVEAA 71
           P T NP  L+ PGGHYSHVAI NG VF+SGQLPI   G KL+EASFE+QA QVLANV+AA
Sbjct: 11  PRTENPATLSKPGGHYSHVAIANGFVFVSGQLPITPQGGKLSEASFEVQAEQVLANVQAA 70

Query: 72  LAGAGSDIGKLLQVRIYLTDVAHWPAFNEIYARWAGSARPARAVVPVPALHFGLQVEVEA 131
           L  AGS + +L+QVR+Y+ DV HW +FN+IYARWAG ARPARAVVPVP LH+G ++EVEA
Sbjct: 71  LESAGSSVAQLVQVRVYIVDVEHWMSFNQIYARWAGEARPARAVVPVPQLHYGFRIEVEA 130

Query: 132 TALL 135
           TAL+
Sbjct: 131 TALV 134