BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3031.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774565.1| amino acid aldolase or racemase [Herbaspiril... 705 0.0 ref|YP_004231096.1| alanine racemase domain-containing protein [... 599 e-169 ref|YP_003911095.1| alanine racemase domain-containing protein [... 591 e-167 gb|AEG68098.1| d-serine deaminase (d-serine dehydratase) protein... 587 e-165 ref|YP_003744690.1| hypothetical protein RCFBP_10743 [Ralstonia ... 577 e-162 >ref|YP_003774565.1| amino acid aldolase or racemase [Herbaspirillum seropedicae SmR1] gb|ADJ62657.1| amino acid aldolase or racemase protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 353/376 (93%), Positives = 367/376 (97%) Query: 30 MSLATLPTPAALIDISRMERNIARMQQRMDALGVRFRPHVKTTKCQQVVQAQLQAGARGI 89 M+LA+LPTPAALID++RM+RNI RMQQRMDALGVRFRPHVKTTKC +VVQAQLQAGA GI Sbjct: 1 MNLASLPTPAALIDVARMQRNITRMQQRMDALGVRFRPHVKTTKCNEVVQAQLQAGASGI 60 Query: 90 TVSTLKEAEQFFAAGITDIVYAVGMAPTKLGQALALRRQGCDLKIVADSVVCAEAIVAFG 149 TVSTLKEAEQFFAAGI+DIVYAVGMAPTKLGQALALRRQGC+LKIVADSVVCAEAIVAFG Sbjct: 61 TVSTLKEAEQFFAAGISDIVYAVGMAPTKLGQALALRRQGCNLKIVADSVVCAEAIVAFG 120 Query: 150 QAQEECFEVWIEIDVDGHRSGIAPEDATLLAVGKVLHAGGMRIGGVIAHAGSSYDYDNDA 209 QAQEECF+VWIEIDVDGHRSGIAPEDATLLAVG VLHAGGMRIGGVIAHAGSSYDYDND Sbjct: 121 QAQEECFDVWIEIDVDGHRSGIAPEDATLLAVGNVLHAGGMRIGGVIAHAGSSYDYDNDE 180 Query: 210 ALIAVAEQERAGCVRAAERLREAGLPCEVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 269 ALIAVAEQERAGCVRAAERLREAGLPC+VVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL Sbjct: 181 ALIAVAEQERAGCVRAAERLREAGLPCDVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 240 Query: 270 VMHNVGVNTMDEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 329 VMHNVGVNTM EIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT Sbjct: 241 VMHNVGVNTMYEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 300 Query: 330 EDGKVLEGYLMSGANQEHGILSRQGSPDAQIAEHLPIGTRLRILPNHACATGAQYQEYQA 389 E+G+VLEGYLMSGANQEHGILSRQG+PDAQIAEHLPIGTRLRILPNHACATGAQ+Q Y A Sbjct: 301 EEGQVLEGYLMSGANQEHGILSRQGTPDAQIAEHLPIGTRLRILPNHACATGAQHQHYHA 360 Query: 390 IAADGSVAIWPRFNGW 405 IAADGSVA WPRFNGW Sbjct: 361 IAADGSVATWPRFNGW 376 >ref|YP_004231096.1| alanine racemase domain-containing protein [Burkholderia sp. CCGE1001] gb|ADX58036.1| alanine racemase domain protein [Burkholderia sp. CCGE1001] Length = 376 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 298/376 (79%), Positives = 326/376 (86%) Query: 30 MSLATLPTPAALIDISRMERNIARMQQRMDALGVRFRPHVKTTKCQQVVQAQLQAGARGI 89 M+L +L TPAALID+ RM+RNIARMQQRM+ALGV+FRPHVKTTKC+QVV+AQ+ AGA GI Sbjct: 1 MNLESLNTPAALIDVERMQRNIARMQQRMNALGVKFRPHVKTTKCEQVVRAQMDAGASGI 60 Query: 90 TVSTLKEAEQFFAAGITDIVYAVGMAPTKLGQALALRRQGCDLKIVADSVVCAEAIVAFG 149 TVSTLKEAEQFFA G+ DIVYAVGMAPTKL QALALRRQGCDLKIVADSV CAEAIVAFG Sbjct: 61 TVSTLKEAEQFFAGGVRDIVYAVGMAPTKLPQALALRRQGCDLKIVADSVACAEAIVAFG 120 Query: 150 QAQEECFEVWIEIDVDGHRSGIAPEDATLLAVGKVLHAGGMRIGGVIAHAGSSYDYDNDA 209 + +E FEVWIEIDVDGHRSGIAPED LL VGK+L GGM GGV+AHAGSSYDYD Sbjct: 121 REHDERFEVWIEIDVDGHRSGIAPEDDMLLTVGKILSDGGMPAGGVLAHAGSSYDYDTHD 180 Query: 210 ALIAVAEQERAGCVRAAERLREAGLPCEVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 269 L+ +AEQERAGCVRAAERLR AGLPC VVS+GSTPTAL AEHL+GVTEVRAGVY MFDL Sbjct: 181 ELVRIAEQERAGCVRAAERLRAAGLPCNVVSVGSTPTALAAEHLQGVTEVRAGVYVMFDL 240 Query: 270 VMHNVGVNTMDEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 329 VMHNVGVN + EIALSVLTTVIGHQ EKGWAIVDAGWMAMSRDRGTQ +K DFGYG VC Sbjct: 241 VMHNVGVNDISEIALSVLTTVIGHQSEKGWAIVDAGWMAMSRDRGTQRQKQDFGYGLVCL 300 Query: 330 EDGKVLEGYLMSGANQEHGILSRQGSPDAQIAEHLPIGTRLRILPNHACATGAQYQEYQA 389 E G+VL YLMSGANQEHGI+SR GSPD QI + P+GTRLRILPNHACATGAQ+ Y A Sbjct: 301 ETGEVLGEYLMSGANQEHGIISRAGSPDQQIEKRFPVGTRLRILPNHACATGAQHPAYLA 360 Query: 390 IAADGSVAIWPRFNGW 405 + +DG+V WPRF GW Sbjct: 361 VQSDGTVETWPRFYGW 376 >ref|YP_003911095.1| alanine racemase domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN61804.1| alanine racemase domain protein [Burkholderia sp. CCGE1003] Length = 376 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 296/376 (78%), Positives = 324/376 (86%) Query: 30 MSLATLPTPAALIDISRMERNIARMQQRMDALGVRFRPHVKTTKCQQVVQAQLQAGARGI 89 M+L +L TPAALID++RM RNI RMQQRM+ LGV FRPHVKTTKC+QVV+AQL AGARGI Sbjct: 1 MNLESLNTPAALIDVARMNRNIERMQQRMNTLGVSFRPHVKTTKCEQVVRAQLAAGARGI 60 Query: 90 TVSTLKEAEQFFAAGITDIVYAVGMAPTKLGQALALRRQGCDLKIVADSVVCAEAIVAFG 149 TVSTLKEAEQFFAAGI DIVYAVGMAPTKL QALALRRQGCDLKIVADSV CAEAIVAFG Sbjct: 61 TVSTLKEAEQFFAAGIRDIVYAVGMAPTKLPQALALRRQGCDLKIVADSVACAEAIVAFG 120 Query: 150 QAQEECFEVWIEIDVDGHRSGIAPEDATLLAVGKVLHAGGMRIGGVIAHAGSSYDYDNDA 209 + +E FEVWIEIDVDGHRSGIAPED L+ V L GGM +GGV+AHAGSSYDYD Sbjct: 121 RRYDEAFEVWIEIDVDGHRSGIAPEDDLLITVAATLSNGGMYVGGVLAHAGSSYDYDTHD 180 Query: 210 ALIAVAEQERAGCVRAAERLREAGLPCEVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 269 L +AEQER+GCVRAAER+R AGLPCEVVSIGSTPTAL A L+GVTEVRAGVY MFDL Sbjct: 181 ELARIAEQERSGCVRAAERIRAAGLPCEVVSIGSTPTALAAGQLQGVTEVRAGVYVMFDL 240 Query: 270 VMHNVGVNTMDEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 329 VMHNVGVN + +IALSVLTTVIGHQ EKGWAIVDAGWMAMSRDRGTQ +KHDFGYG VC Sbjct: 241 VMHNVGVNELSDIALSVLTTVIGHQNEKGWAIVDAGWMAMSRDRGTQRQKHDFGYGLVCL 300 Query: 330 EDGKVLEGYLMSGANQEHGILSRQGSPDAQIAEHLPIGTRLRILPNHACATGAQYQEYQA 389 E+G+VL Y+MS ANQEHGI+SR G+PD +I + LPIGTRLRILPNHACATGAQ+ YQA Sbjct: 301 ENGEVLGEYVMSAANQEHGIISRAGTPDHEIEKRLPIGTRLRILPNHACATGAQHPAYQA 360 Query: 390 IAADGSVAIWPRFNGW 405 + ADGSV WPRF GW Sbjct: 361 VRADGSVETWPRFYGW 376 >gb|AEG68098.1| d-serine deaminase (d-serine dehydratase) protein [Ralstonia solanacearum Po82] Length = 398 Score = 587 bits (1513), Expect = e-165, Method: Composition-based stats. Identities = 292/385 (75%), Positives = 329/385 (85%) Query: 21 STYPLQEFPMSLATLPTPAALIDISRMERNIARMQQRMDALGVRFRPHVKTTKCQQVVQA 80 +++P Q+ PM L L TPAALID++RM NIARMQQR+DALGVRFRPHVKTTKC+ VV+A Sbjct: 14 TSHPRQDHPMRLPALNTPAALIDVARMTSNIARMQQRLDALGVRFRPHVKTTKCEPVVRA 73 Query: 81 QLQAGARGITVSTLKEAEQFFAAGITDIVYAVGMAPTKLGQALALRRQGCDLKIVADSVV 140 QL AGA+GITVSTLKEAEQFFAAGI DIVYAVGMAPT+L QALALRR+GCDLKIVADSV Sbjct: 74 QLAAGAQGITVSTLKEAEQFFAAGIRDIVYAVGMAPTRLPQALALRRRGCDLKIVADSVA 133 Query: 141 CAEAIVAFGQAQEECFEVWIEIDVDGHRSGIAPEDATLLAVGKVLHAGGMRIGGVIAHAG 200 CA+AI AFG A E FEVWIE+DVDGHRSGI P+D L+AVG+VL GGMR+GGV+AHAG Sbjct: 134 CAQAIAAFGSAHGEAFEVWIEVDVDGHRSGIVPDDDRLIAVGRVLAEGGMRLGGVLAHAG 193 Query: 201 SSYDYDNDAALIAVAEQERAGCVRAAERLREAGLPCEVVSIGSTPTALRAEHLRGVTEVR 260 SSY+Y AL+ +AE ER+GCVRAAERLR AGLPCE VSIGSTPTAL AEHL GVTEVR Sbjct: 194 SSYEYHAHDALVRIAELERSGCVRAAERLRAAGLPCETVSIGSTPTALSAEHLDGVTEVR 253 Query: 261 AGVYAMFDLVMHNVGVNTMDEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKH 320 AGVY MFDLVMHNVGV + +IALSVLTTVIGHQ +KGWAIVDAGWMAMSRDRGTQ + Sbjct: 254 AGVYVMFDLVMHNVGVCALSDIALSVLTTVIGHQEDKGWAIVDAGWMAMSRDRGTQKQPR 313 Query: 321 DFGYGQVCTEDGKVLEGYLMSGANQEHGILSRQGSPDAQIAEHLPIGTRLRILPNHACAT 380 DFGYG VC+E G+VL YLM+GANQEHGI+SR G+P+ I + PIGTRLRILPNHACAT Sbjct: 314 DFGYGLVCSEQGEVLTDYLMTGANQEHGIISRTGTPNRGIVQRFPIGTRLRILPNHACAT 373 Query: 381 GAQYQEYQAIAADGSVAIWPRFNGW 405 GAQ+ EYQA+A DG+V WPRF GW Sbjct: 374 GAQHPEYQALAEDGTVQAWPRFYGW 398 >ref|YP_003744690.1| hypothetical protein RCFBP_10743 [Ralstonia solanacearum CFBP2957] emb|CBJ42046.1| conserved protein of unknown function, Alanine racemase domain protein [Ralstonia solanacearum CFBP2957] Length = 376 Score = 577 bits (1488), Expect = e-162, Method: Composition-based stats. Identities = 289/376 (76%), Positives = 322/376 (85%) Query: 30 MSLATLPTPAALIDISRMERNIARMQQRMDALGVRFRPHVKTTKCQQVVQAQLQAGARGI 89 M L L TPAALID++RM NIARMQQR+DALGVRFRPHVKTTKC+ VV+AQL AGA+GI Sbjct: 1 MHLPALNTPAALIDVARMTGNIARMQQRLDALGVRFRPHVKTTKCEPVVRAQLDAGAQGI 60 Query: 90 TVSTLKEAEQFFAAGITDIVYAVGMAPTKLGQALALRRQGCDLKIVADSVVCAEAIVAFG 149 TVSTLKEAEQFFAAG+ DIVYAVGMAPT+L QALALRR+GCDLKIVADSV CA+AI AFG Sbjct: 61 TVSTLKEAEQFFAAGLRDIVYAVGMAPTRLPQALALRRRGCDLKIVADSVACAQAIAAFG 120 Query: 150 QAQEECFEVWIEIDVDGHRSGIAPEDATLLAVGKVLHAGGMRIGGVIAHAGSSYDYDNDA 209 E FEVWIE+DVDGHRSGI P+D L+AVG+VL GGMR+GGV+AHAGSSY+Y Sbjct: 121 NTHGEAFEVWIEVDVDGHRSGIVPDDDRLIAVGRVLAEGGMRLGGVLAHAGSSYEYHAHD 180 Query: 210 ALIAVAEQERAGCVRAAERLREAGLPCEVVSIGSTPTALRAEHLRGVTEVRAGVYAMFDL 269 AL+ VAE ER+GCVRAAERLR AGLPCE VSIGSTPTAL AEHL GVTEVRAGVY MFDL Sbjct: 181 ALVRVAELERSGCVRAAERLRAAGLPCETVSIGSTPTALSAEHLEGVTEVRAGVYVMFDL 240 Query: 270 VMHNVGVNTMDEIALSVLTTVIGHQPEKGWAIVDAGWMAMSRDRGTQGRKHDFGYGQVCT 329 VMHNVGV + +IALSVLTTVIGHQ +KGWAIVDAGWMAMSRDRGTQ + DFGYG VC+ Sbjct: 241 VMHNVGVCALSDIALSVLTTVIGHQEDKGWAIVDAGWMAMSRDRGTQKQPRDFGYGLVCS 300 Query: 330 EDGKVLEGYLMSGANQEHGILSRQGSPDAQIAEHLPIGTRLRILPNHACATGAQYQEYQA 389 E G+VL YLM+GANQEHGI+SR G+PD IA+ P+GTRLRILPNHACATGAQ+ EYQA Sbjct: 301 EQGEVLADYLMTGANQEHGIISRTGTPDRAIAQRFPVGTRLRILPNHACATGAQHPEYQA 360 Query: 390 IAADGSVAIWPRFNGW 405 +A DG+V WPRF GW Sbjct: 361 LAEDGTVQAWPRFYGW 376