BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3030.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_546935.1| LysR family transcriptional regulator [Polaromo... 365 4e-99 ref|YP_001020243.1| LysR family transcriptional regulator [Methy... 352 4e-95 ref|YP_004152473.1| LysR family transcriptional regulator [Vario... 330 1e-88 ref|YP_002942063.1| LysR family transcriptional regulator [Vario... 322 4e-86 ref|YP_003979072.1| LysR family transcriptional regulator [Achro... 283 3e-74 >ref|YP_546935.1| LysR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE42037.1| transcriptional regulator, LysR family [Polaromonas sp. JS666] Length = 296 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 191/297 (64%), Positives = 236/297 (79%), Gaps = 2/297 (0%) Query: 1 MRELSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQA 60 MREL+LDQLRTLV+I DLGTFSAAA ALHLAQPT+SLH+S+LE RLG+ L++RG R V Sbjct: 1 MRELNLDQLRTLVSIADLGTFSAAARALHLAQPTVSLHISELEARLGAQLVVRGGRSVVP 60 Query: 61 TALGALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSY 120 TA GA++++RARRLLRDADD D ++HVEG++GRVRLGTSTG+VV+LLPRVL + ++ Sbjct: 61 TAAGAVLVERARRLLRDADDATDAVKRHVEGRLGRVRLGTSTGIVVHLLPRVLELMARAH 120 Query: 121 PGIDVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSP 180 P IDVEV+I+GS ETM RL +GTLD+GLVA P A +++ ++HWRSD MMAF+P W +P Sbjct: 121 PEIDVEVSILGSAETMERLGQGTLDVGLVATPQPARRELVMSHWRSDPMMAFIPTGWPAP 180 Query: 181 AAIKPGWLMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGAA 240 I P WLMDKP+IFND+TT MYRLTM WFA+AG PRARIELNY EAMKSLV AGYGAA Sbjct: 181 KRITPPWLMDKPLIFNDSTTHMYRLTMEWFAKAGHTPRARIELNYTEAMKSLVVAGYGAA 240 Query: 241 ILPLEQPLAAELERHKDIRIVPLSPVLKRHIGVAHRALPNLDKATVNVLETIRQFQE 297 +LPLEQ AA ++++PL P L RH V HR L LD AT N+L+T+ QF++ Sbjct: 241 LLPLEQAGAAATP--NGVQVLPLKPALTRHTAVVHRPLAALDGATRNLLQTLAQFRQ 295 >ref|YP_001020243.1| LysR family transcriptional regulator [Methylibium petroleiphilum PM1] gb|ABM94008.1| transcriptional regulator, LysR family [Methylibium petroleiphilum PM1] Length = 298 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 184/297 (61%), Positives = 231/297 (77%) Query: 1 MRELSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQA 60 MREL+LDQLRTLV+I DLGTFSAAA ALHLAQPT+SLH+ +LE RLG+ L++RGSRRV Sbjct: 1 MRELNLDQLRTLVSIADLGTFSAAARALHLAQPTVSLHIGELESRLGTPLVVRGSRRVSP 60 Query: 61 TALGALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSY 120 TA GA +IDRARRLLRDAD+ +D ++H G+ GRVRLGTSTGV+V+LLP+VL+ LE+ + Sbjct: 61 TAAGAALIDRARRLLRDADEAIDTVQRHARGQAGRVRLGTSTGVIVHLLPQVLKVLEHEH 120 Query: 121 PGIDVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSP 180 GIDVEV I+GSN M RL GTLDIGL+A+P +D+ +THWR+D M AF+P W++P Sbjct: 121 AGIDVEVAILGSNHCMERLTAGTLDIGLIALPQPPVRDLVVTHWRNDPMRAFVPPRWRAP 180 Query: 181 AAIKPGWLMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGAA 240 A P WL +P+IFNDATT+MYR+TM WFA AG PRARIELNY EA+KSLV+AGYGAA Sbjct: 181 RAATPDWLAAQPLIFNDATTRMYRMTMEWFAAAGHAPRARIELNYTEAIKSLVAAGYGAA 240 Query: 241 ILPLEQPLAAELERHKDIRIVPLSPVLKRHIGVAHRALPNLDKATVNVLETIRQFQE 297 ILP+E A ++++PL P L R +GVAHRA +LD AT VL T+ +F++ Sbjct: 241 ILPMESSAVAVAAGADPVQLIPLRPALTRSLGVAHRAPSSLDGATRIVLATLERFRQ 297 >ref|YP_004152473.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU34362.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 296 Score = 330 bits (846), Expect = 1e-88, Method: Composition-based stats. Identities = 171/297 (57%), Positives = 227/297 (76%), Gaps = 2/297 (0%) Query: 1 MRELSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQA 60 MR+L+LDQLRTL+ I DLGTFSAAA ALHLAQPT+SLH+S+LE RLG+ L++RGSR V Sbjct: 1 MRQLNLDQLRTLIAIADLGTFSAAAKALHLAQPTVSLHISELESRLGAQLVVRGSRTVTP 60 Query: 61 TALGALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSY 120 TA GA +++R RRLLRD D+ +D ++ EG+ GRVRLGTSTGVVV+LLP+VL L + Sbjct: 61 TAAGAALVERGRRLLRDTDEAIDAVKRQTEGRTGRVRLGTSTGVVVDLLPQVLEALGTVH 120 Query: 121 PGIDVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSP 180 GIDVEV+I+GSN+ MARL GTLDIGLVA+P +D+ +T WR MMAF+P WK+P Sbjct: 121 AGIDVEVSILGSNDAMARLAAGTLDIGLVAMPQPPGRDLVVTPWRDQAMMAFVPQRWKAP 180 Query: 181 AAIKPGWLMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGAA 240 + P WL +P+IFNDATT MYRLTM WFA AG PRARIELNY+ A++SLV+AGYGA+ Sbjct: 181 KRVTPAWLAAQPLIFNDATTHMYRLTMEWFAGAGFAPRARIELNYDAAIQSLVAAGYGAS 240 Query: 241 ILPLEQPLAAELERHKDIRIVPLSPVLKRHIGVAHRALPNLDKATVNVLETIRQFQE 297 +LPL+ A+ ++ ++++P++P L R +G+AHR +D AT +VL+ + F++ Sbjct: 241 LLPLQH--TADDALNQRMQVLPITPKLTRRLGIAHRLPGVIDGATQSVLKVLTTFRQ 295 >ref|YP_002942063.1| LysR family transcriptional regulator [Variovorax paradoxus S110] gb|ACS16797.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 296 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 171/297 (57%), Positives = 226/297 (76%), Gaps = 2/297 (0%) Query: 1 MRELSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQA 60 MR+L+LDQLRTL+ I DLGTFSAAA ALHLAQPT+SLH+S+LE RL + L++RG+RRV Sbjct: 1 MRQLNLDQLRTLIAIADLGTFSAAAKALHLAQPTVSLHISELESRLDAQLVVRGNRRVTP 60 Query: 61 TALGALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSY 120 TA GA +++R R+LLRD DD ++ ++ EG+ GRVRLGTSTGVVV+LLP+VL L + Sbjct: 61 TAAGAALVERGRKLLRDTDDAVEAVKRQAEGRTGRVRLGTSTGVVVDLLPQVLEALGARH 120 Query: 121 PGIDVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSP 180 GIDVEV+I+GS E MARL GTLDIGLVA+P +++ +T W MMAF+P WK+P Sbjct: 121 AGIDVEVSILGSYEAMARLAAGTLDIGLVAMPQPPLRELVVTPWCDQAMMAFVPQRWKAP 180 Query: 181 AAIKPGWLMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGAA 240 + P WL +P+IFNDATT MYRL+M WFA AG PRARIELNY+ A++SLV+AGYGAA Sbjct: 181 RRVTPAWLAAQPLIFNDATTHMYRLSMEWFAAAGFAPRARIELNYDAAIRSLVAAGYGAA 240 Query: 241 ILPLEQPLAAELERHKDIRIVPLSPVLKRHIGVAHRALPNLDKATVNVLETIRQFQE 297 +LPL+Q A L ++ ++I+P++P L R +G+AHR LD AT +VL+ + F++ Sbjct: 241 LLPLQQTTDAAL--NERMQILPITPRLTRRLGIAHRQRALLDGATQSVLQVLTAFRQ 295 >ref|YP_003979072.1| LysR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP16357.1| bacterial regulatory helix-turn-helix protein, LysR family protein 89 [Achromobacter xylosoxidans A8] Length = 297 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 155/298 (52%), Positives = 217/298 (72%), Gaps = 4/298 (1%) Query: 1 MRELSLDQLRTLVTIVDLGTFSAAANALHLAQPTISLHVSDLEERLGSALLMRGSRRVQA 60 MRE+SLD+LRTLV I DLG+F+ AA ALHLA PTISLHV+DLE R+G+ LL R +V+ Sbjct: 1 MREISLDRLRTLVAIADLGSFADAARALHLAPPTISLHVADLEARIGAPLLTRKRGQVRP 60 Query: 61 TALGALVIDRARRLLRDADDLLDVARKHVEGKVGRVRLGTSTGVVVNLLPRVLRQLENSY 120 T++G +++RARRLL DAD LD ++ V+G GRVRLG STG + +LLP+ L L ++ Sbjct: 61 TSIGETLLERARRLLADADQALDDVQRQVQGLAGRVRLGASTGAIAHLLPQALETLGRNH 120 Query: 121 PGIDVEVNIMGSNETMARLQEGTLDIGLVAIPITASKDIQITHWRSDRMMAFLPATWKSP 180 PGIDV+V ++ S ET+ RL +G+LD+GLVA+P + + + WR D +MAFLPA+W++P Sbjct: 121 PGIDVQVAVLTSQETLLRLADGSLDVGLVALPQPPLEGLVLRPWRRDPVMAFLPASWQAP 180 Query: 181 AAIKPGWLMDKPMIFNDATTQMYRLTMAWFAEAGENPRARIELNYNEAMKSLVSAGYGAA 240 A + P WL ++P+I NDA+T++ RLT WFA AG NPRARI+LNYN+A+KSLV+AGYGA Sbjct: 181 ARLTPAWLAERPLILNDASTRLSRLTGEWFAAAGLNPRARIQLNYNDAIKSLVAAGYGAT 240 Query: 241 ILPLEQPLAAELERHKDIRIVPLSPVLKRHIGVAHRALPNLDKATVNVLETIRQFQEA 298 +LP E A + I + PL P L R +G+AHRA +++AT +VL+ + + + + Sbjct: 241 LLPHE---ATAPQPDPRIEMRPLRPALWRPLGIAHRA-GQVEQATRHVLDVLWELRAS 294