BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3029.p (515 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774566.1| methyl-accepting chemotaxis transducer trans... 735 0.0 ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herba... 523 e-146 ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I ... 436 e-120 ref|YP_004751579.1| methyl-accepting chemotaxis sensory transduc... 420 e-115 ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbasp... 409 e-112 >ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62658.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 477/515 (92%), Positives = 500/515 (97%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 MIWFYNLNIAKKLALSFAVVIALTLLQGLFA+KELKQVN ASGEIV+KWMPTMDAARELQ Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 GSLPPLRLNELELVTAVTPQER+AAN++IK RLDAL +QRA+FEQRMSEP+EKEQYAQF Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 KNL AY+KVDEQLAEMAANQQYDETRALFNG+SAKLY +MVGNL+AIVK+N SGSA+ADE Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 +AS VFR AQRWIVGLLAATV I SLLAF+VATNVSRPLKEAV+IAQRVARGDLTLRIRP Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 AGRDETG LMEALR MN+SLRDIV+EVRQGTDTI TAS+EIARGNLDLSNRTEQQAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTVTQNADNARQANQLAATASDIASQGG+VVGQVVQTMEGITESSRRIAD Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVEQAAAAADSLKGQA NLAAVVGKFKL+ Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKLD 515 >ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ66081.1| methyl-accepting chemotaxis protein I, serine sensor receptor protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 355/515 (68%), Positives = 422/515 (81%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WF NL IAKKL +SFA VI LT++ GLFA++ELK VN AS ++ W+PT+ AA+ +Q Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 SLP +R++EL++VTA TP ER A ++IK RLD LAKQRA +E ++SE EEK Y +F Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 K+ A YL++D++LA ++A + +E RALF G+S K + +M+ N++ I+KVN +GS R+D+ Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 A V+R+A WI+GLLAA V I LA +VA VSRPL EAV +A+RVA+GDLT+ IR Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 DETG LM +LR MNDSL+ IV EVR GTDTI TAS EIA GNLDLS+RTE+QAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LT+TV QNADNARQANQLAA+ASDIA+QGG VVGQVVQTMEGITESS RIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV+KV AGS LVERAG+TM+EVVASVRRVTDVVAEISAA+ EQS GI E+N AITQMDE Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVE+AAAAA SL+ QA L+ VV FKL+ Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQ 515 >ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ64222.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 296/515 (57%), Positives = 377/515 (73%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WFY+L I++KL +F VV+A+ G+F++++L QVNSAS EI W+P++ LQ Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 ++ LR EL+ + A +E + ++ +++ L +A + ++SEPEEK Y + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 K +A ++ +++ ++ + +E R L GES K Y + ++ + VN G+ +++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 A ++ A+ WI+ +AA + + LLA V+ ++RPL+EAV +AQRVA GDLT RI P Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 AG+DETG+L+ AL+ MNDSL IV +VR GT TI TAS EIA GNLDLS+RTE+QA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTV QNADNARQANQLA +AS++ASQGG VV QVV TM I SSR+IAD Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV +V GS LVERAG TM+EVV SVRRVTD+V EIS+A+QEQS GI +VNLAI QMDE Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVE+AAAAA SL+ QA L VG FKLE Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE 515 >ref|YP_004751579.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK60756.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 635 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 279/515 (54%), Positives = 369/515 (71%), Gaps = 1/515 (0%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WFYNL IA KL LSFA+++ LTL+ G+ ++ +L QVN+ + EI + W+P++ L+ Sbjct: 96 MTWFYNLKIATKLLLSFALILMLTLVLGVASITQLGQVNATTNEINSNWLPSVRMLLTLK 155 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 +L LR E++ V + + + Q I + K + + +SE EE+ Y Q Sbjct: 156 SNLALLRNVEMQHVMSNDAADMDKSAQFIGDIRGDVQKTLSEYAPLVSE-EERAVYDQLK 214 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 + YL++D+++ +++ + D+ G+S + + +VK+N+ GSA + + Sbjct: 215 DKIPRYLEMDKKIVDISRAFRKDDAIKEIRGDSLAAIVELDKQVERLVKINSDGSAASAK 274 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 D ++ A+ W++GL+ A + +G LA +A V++PL+ AV++A+RVA GDLT I Sbjct: 275 DGEAIYNKARFWMIGLMIAMLLLGFALALWIARVVAQPLEFAVDVARRVAGGDLTADIEV 334 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 DETG+LM+AL+ MN SL+ IV EVR GTDTIATAS +IA GN +LS RTEQQA SLE Sbjct: 335 RSSDETGQLMQALKDMNHSLQKIVGEVRSGTDTIATASGQIAAGNQNLSQRTEQQASSLE 394 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETA++MEQLTSTV QNADNA QANQLA +AS++A GG VV QVV TM I SS++I D Sbjct: 395 ETAASMEQLTSTVKQNADNASQANQLAVSASEVALHGGTVVTQVVSTMGAINTSSKKIVD 454 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIK LIDD Sbjct: 455 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKGLIDD 514 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV+KV G+ LV++AGSTM E+VASVRRVTD++ EI+AA+QEQ+ GI ++N AI+QMD+ Sbjct: 515 SVEKVGLGTRLVDQAGSTMEEIVASVRRVTDIMGEITAASQEQTAGIEQINQAISQMDQV 574 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVE+AAAAA SL+ QAG LA VVG FKLE Sbjct: 575 TQQNAALVEEAAAAAASLQDQAGALAGVVGAFKLE 609 >ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ65208.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 281/515 (54%), Positives = 362/515 (70%) Query: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAMKELKQVNSASGEIVNKWMPTMDAARELQ 60 M WFYNL IA KL +F VV+ + G F+ EL VN +S +I W+P++DA ++ Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 GSLPPLRLNELELVTAVTPQERSAANQSIKKRLDALAKQRAVFEQRMSEPEEKEQYAQFG 120 +L R +++ + QE A+ + K++ L K+ A + + +SEP EKE Y + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KNLAAYLKVDEQLAEMAANQQYDETRALFNGESAKLYTAMVGNLNAIVKVNASGSARADE 180 +N+A Y + E+++ + Q AL N S +Y + + + +VN+ G+A +D Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 DASGVFRAAQRWIVGLLAATVAIGSLLAFVVATNVSRPLKEAVEIAQRVARGDLTLRIRP 240 DA ++ A I+ L+ V + L++ +A V+RPL AV+IA++VA GDLT I Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 AGRDETGRLMEALRVMNDSLRDIVNEVRQGTDTIATASNEIARGNLDLSNRTEQQAGSLE 300 A RDETG+L+EALR MN +L +IV EVRQGTDTI TAS EIA GN+DLS+RTEQQAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEQLTSTVTQNADNARQANQLAATASDIASQGGDVVGQVVQTMEGITESSRRIAD 360 ETASAME+LTSTV QN+DNARQANQLA AS++A GG VVG+VV TM I +SSR+I D Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 SV KV GS LV+ AG TM EVVASV+RV+D+VAEI+AA EQ+ GI ++N A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEQAAAAADSLKGQAGNLAAVVGKFKLE 515 TQQNAALVEQAAAAA +L+ QAG L+ V F+L+ Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD 515