BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3027.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABM69269.1| GcdR [Azoarcus sp. CIB] 368 e-100 ref|YP_158712.1| LysR family transcriptional regulator [Aromatol... 365 4e-99 ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudom... 355 4e-96 ref|NP_249139.1| transcriptional regulator [Pseudomonas aerugino... 355 5e-96 ref|ZP_04936866.1| hypothetical protein PA2G_04363 [Pseudomonas ... 354 8e-96 >gb|ABM69269.1| GcdR [Azoarcus sp. CIB] Length = 303 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 186/302 (61%), Positives = 225/302 (74%) Query: 1 MRRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGV 60 MRRKIPST A+ FE AARH+SFT+AA+E+A+TQSA+CRQ+A+LE+FLGL+LFRRTKRGV Sbjct: 1 MRRKIPSTAALLAFERAARHESFTRAAEELALTQSAICRQIASLEDFLGLRLFRRTKRGV 60 Query: 61 RLTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEA 120 LTEAG+SYS Q+ RLD +ERD L +M+ G G T+EL VMPTFATRWLLPRL FL Sbjct: 61 TLTEAGLSYSRQISARLDAMERDTLSVMAHHGRGATIELAVMPTFATRWLLPRLGEFLAR 120 Query: 121 HPGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRK 180 HP VTVN+ RTRPFLF +T DA LY G A WPGTE FLMRE+ V SP ++ Sbjct: 121 HPDVTVNMNNRTRPFLFADTEFDAALYFGDAGWPGTEAHFLMRENATPVCSPRMLQGRTA 180 Query: 181 LTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALI 240 L P E+ +PLLQQSTRPY WR WF S G+QV +D+ GT+ ELFSML QAA+ MG+ALI Sbjct: 181 LAPEEIATFPLLQQSTRPYGWRDWFGSLGLQVAHDMTGTRYELFSMLAQAAMQDMGIALI 240 Query: 241 PRFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQAKAYRLPS 300 P FLI +EL G LV+ +H YLS +YYLI PER +E L F++WL E A AYR+ + Sbjct: 241 PPFLIREELDSGRLVIPCNHVYLSAKAYYLIIPERKAETASLAAFRDWLVEAAAAYRIAT 300 Query: 301 GL 302 GL Sbjct: 301 GL 302 >ref|YP_158712.1| LysR family transcriptional regulator [Aromatoleum aromaticum EbN1] emb|CAI07811.1| Transcriptional regulator, lysR family [Aromatoleum aromaticum EbN1] Length = 303 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 189/302 (62%), Positives = 226/302 (74%) Query: 1 MRRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGV 60 MRR+IPST A+ FE AARH+SFT+AA+E+++TQSA+CRQ+A LEEFLGL+LFRRTKRGV Sbjct: 1 MRRRIPSTTALLAFELAARHESFTRAAEELSLTQSAICRQIAGLEEFLGLRLFRRTKRGV 60 Query: 61 RLTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEA 120 LTEAG+SYS Q+ RLD +ERD L +M+ G G T+EL V+PTFATRWLLPRL FL Sbjct: 61 TLTEAGLSYSRQITARLDAVERDTLSVMAHHGRGATIELAVVPTFATRWLLPRLGDFLAG 120 Query: 121 HPGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRK 180 HPGVTVNL R+RPFLF ET LDA LY G A WPGTEG FLMRE+ V V SP L+ Sbjct: 121 HPGVTVNLTNRSRPFLFAETELDAALYFGDAGWPGTEGHFLMRENPVPVCSPRLLAGRAG 180 Query: 181 LTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALI 240 L P E+ A PLLQQ+TRPY WR WF S GM+V +DL G + ELF+ML QAA+ MGVALI Sbjct: 181 LAPDEIAALPLLQQTTRPYAWRLWFESLGMRVAHDLTGARHELFTMLAQAAMYDMGVALI 240 Query: 241 PRFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQAKAYRLPS 300 P FLI++EL G LV+ H YLS +YYLI PER +E L F++WL E A YR+ + Sbjct: 241 PPFLIQEELDSGRLVIPFRHGYLSDKAYYLIIPERKAETTALAAFRDWLLEAAAEYRVEA 300 Query: 301 GL 302 GL Sbjct: 301 GL 302 >ref|ZP_01363350.1| hypothetical protein PaerPA_01000444 [Pseudomonas aeruginosa PACS2] ref|YP_788621.1| LysR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002438052.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] ref|ZP_04930644.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719] ref|ZP_06876444.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gb|ABJ15413.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ54763.1| hypothetical protein PACG_03392 [Pseudomonas aeruginosa C3719] emb|CAW25171.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gb|EGM21129.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504] gb|AEO72935.1| putative transcriptional regulator [Pseudomonas aeruginosa M18] Length = 302 Score = 355 bits (912), Expect = 4e-96, Method: Composition-based stats. Identities = 183/303 (60%), Positives = 227/303 (74%), Gaps = 1/303 (0%) Query: 1 MRRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGV 60 MRRKIPST A+ FESAARH+SFTKAA+E+++TQSA+CRQ+A LEEFLG++LFRR++RGV Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 RLTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEA 120 +LTEAG+SYS +V RLD +ERD L +M G G +EL V+PTF T+WLLPRL+ F Sbjct: 61 KLTEAGLSYSRRVAVRLDAVERDTLAVMGHQG-GGAIELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRK 180 HP VTVNL RTRPFLF +T DA LY G A W GT FLMRE+ V V SPEL+G R Sbjct: 120 HPEVTVNLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALI 240 L+ ++ PL+QQSTRPY WRQWF S G+ V +D+ G + ELFSML QAA+ GMGVALI Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQAKAYRLPS 300 P FLI+DEL G L+V + H YLS ++YYLI PER E +L F++WL E+A+ YR + Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYREAN 299 Query: 301 GLG 303 GLG Sbjct: 300 GLG 302 >ref|NP_249139.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] ref|ZP_07797716.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|AAG03837.1|AE004482_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gb|EFQ42812.1| putative transcriptional regulator, LysR family [Pseudomonas aeruginosa 39016] gb|EGM20783.1| transcriptional regulator [Pseudomonas aeruginosa 138244] dbj|GAA19462.1| probable transcriptional regulator [Pseudomonas aeruginosa NCMG1179] dbj|BAK92561.1| LysR family transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 302 Score = 355 bits (911), Expect = 5e-96, Method: Composition-based stats. Identities = 182/303 (60%), Positives = 227/303 (74%), Gaps = 1/303 (0%) Query: 1 MRRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGV 60 MRRKIPST A+ FESAARH+SFTKAA+E+++TQSA+CRQ+A LEEFLG++LFRR++RGV Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 RLTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEA 120 +LTEAG+SYS +V RLD +ERD L +M G G +EL V+PTF T+WLLPRL+ F Sbjct: 61 KLTEAGLSYSRRVAVRLDAVERDTLAVMGHQG-GGAIELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRK 180 HP VT+NL RTRPFLF +T DA LY G A W GT FLMRE+ V V SPEL+G R Sbjct: 120 HPEVTINLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALI 240 L+ ++ PL+QQSTRPY WRQWF S G+ V +D+ G + ELFSML QAA+ GMGVALI Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQAKAYRLPS 300 P FLI+DEL G L+V + H YLS ++YYLI PER E +L F++WL E+A+ YR + Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYREAN 299 Query: 301 GLG 303 GLG Sbjct: 300 GLG 302 >ref|ZP_04936866.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192] gb|EAZ60985.1| hypothetical protein PA2G_04363 [Pseudomonas aeruginosa 2192] Length = 302 Score = 354 bits (909), Expect = 8e-96, Method: Composition-based stats. Identities = 182/303 (60%), Positives = 227/303 (74%), Gaps = 1/303 (0%) Query: 1 MRRKIPSTQAMAVFESAARHQSFTKAAQEMAVTQSAVCRQVAALEEFLGLKLFRRTKRGV 60 MRRKIPST A+ FESAARH+SFTKAA+E+++TQSA+CRQ+A LEEFLG++LFRR++RGV Sbjct: 1 MRRKIPSTAALVSFESAARHESFTKAAEELSLTQSAICRQIATLEEFLGVELFRRSRRGV 60 Query: 61 RLTEAGVSYSHQVGQRLDEIERDALHLMSRDGHGDTLELGVMPTFATRWLLPRLRSFLEA 120 +LTEAG++YS +V RLD +ERD L +M G G +EL V+PTF T+WLLPRL+ F Sbjct: 61 KLTEAGLTYSRRVAVRLDAVERDTLAVMGHQG-GGAIELAVVPTFGTQWLLPRLKRFQRL 119 Query: 121 HPGVTVNLRPRTRPFLFEETNLDATLYAGQASWPGTEGVFLMRESMVAVASPELIGAGRK 180 HP VTVNL RTRPFLF +T DA LY G A W GT FLMRE+ V V SPEL+G R Sbjct: 120 HPEVTVNLTNRTRPFLFADTEFDAALYFGDADWSGTVSHFLMRENPVPVCSPELLGGRRT 179 Query: 181 LTPTELLAYPLLQQSTRPYVWRQWFASFGMQVQNDLVGTQLELFSMLTQAAIVGMGVALI 240 L+ ++ PL+QQSTRPY WRQWF S G+ V +D+ G + ELFSML QAA+ GMGVALI Sbjct: 180 LSAEQVAGLPLMQQSTRPYAWRQWFHSQGLNVAHDMSGPRYELFSMLAQAAMHGMGVALI 239 Query: 241 PRFLIEDELRRGLLVVAVDHDYLSTHSYYLIYPERTSERPLLRLFQEWLEEQAKAYRLPS 300 P FLI+DEL G L+V + H YLS ++YYLI PER E +L F++WL E+A+ YR + Sbjct: 240 PPFLIQDELADGRLIVPMQHAYLSENAYYLIIPERRVESAMLNAFRDWLVEEARQYREAN 299 Query: 301 GLG 303 GLG Sbjct: 300 GLG 302