BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3025.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004153204.1| L-carnitine dehydratase/bile acid-inducible ... 620 e-175 ref|YP_002942758.1| L-carnitine dehydratase/bile acid-inducible ... 616 e-174 ref|YP_523837.1| L-carnitine dehydratase/bile acid-inducible pro... 607 e-171 ref|YP_003607588.1| L-carnitine dehydratase/bile acid-inducible ... 591 e-167 ref|YP_001766168.1| L-carnitine dehydratase/bile acid-inducible ... 564 e-159 >ref|YP_004153204.1| L-carnitine dehydratase/bile acid-inducible protein f [Variovorax paradoxus EPS] gb|ADU35093.1| L-carnitine dehydratase/bile acid-inducible protein F [Variovorax paradoxus EPS] Length = 402 Score = 620 bits (1599), Expect = e-175, Method: Composition-based stats. Identities = 293/397 (73%), Positives = 343/397 (86%) Query: 6 ASLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGSTETAYF 65 +SLPLAGVRVLDLSR+LAGPWC MVL D+GAEVIKVEHP RGDDTRDWG R+G TETAYF Sbjct: 6 SSLPLAGVRVLDLSRILAGPWCGMVLADMGAEVIKVEHPGRGDDTRDWGLRVGKTETAYF 65 Query: 66 NSVNRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRDNPGLV 125 NSVNRNKRS+++DLQT EGQ + R LA++ DVVIQNFKFGG+ K GL YE L ++ PGL+ Sbjct: 66 NSVNRNKRSVTLDLQTPEGQQLARDLAKQCDVVIQNFKFGGIDKLGLGYEQLSKEQPGLI 125 Query: 126 YCSITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMYSAQGV 185 YCSI+GYD +GPEA RPGYDLV+QGE+GLM+LNGEA+QPPLK GVAAVDLFTGMYSAQ + Sbjct: 126 YCSISGYDRTGPEAARPGYDLVVQGEAGLMALNGEANQPPLKFGVAAVDLFTGMYSAQAI 185 Query: 186 LAALYQRQQTGQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNAHPSIIPYGVFDA 245 LAALYQR++TG+GRHVEMALFDCG+MIT+YYGLEAL++G+DPPRYGN+HPSI+PYGVFDA Sbjct: 186 LAALYQREKTGKGRHVEMALFDCGLMITAYYGLEALLMGEDPPRYGNSHPSIVPYGVFDA 245 Query: 246 ADGRLVITVGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLVPEINRELKARKR 305 ADG LVITVG N+Q+ RFC VIDRPDLA D RFKTN+ R +R VL+PE++ EL R+R Sbjct: 246 ADGPLVITVGNNAQFARFCTDVIDRPDLAADERFKTNILRSANRAVLLPELHAELAKRQR 305 Query: 306 ADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQVLTPPYRFDGERL 365 DLLA+L +GIPCGEVLGL EAL S RAT AGLV PH AG+V VL PPYRFDGERL Sbjct: 306 VDLLAKLTASGIPCGEVLGLLEALQSKRATDAGLVTEQPHPVAGTVNVLAPPYRFDGERL 365 Query: 366 PVRKAPPSLGEGTGEVLQSLLGMEEAQIAALRERGVL 402 PVR APP+LGEGT +VLQSLLG+ + ++AAL+ GV+ Sbjct: 366 PVRNAPPTLGEGTHDVLQSLLGLSDDKLAALKTSGVV 402 >ref|YP_002942758.1| L-carnitine dehydratase/bile acid-inducible protein F [Variovorax paradoxus S110] gb|ACS17492.1| L-carnitine dehydratase/bile acid-inducible protein F [Variovorax paradoxus S110] Length = 402 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 296/402 (73%), Positives = 341/402 (84%) Query: 1 MTEQTASLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGST 60 M +SLPLAGVRVLDLSR+LAGPWC MVL D+GAEVIKVEHP RGDDTRDWG R+G T Sbjct: 1 MPMLNSSLPLAGVRVLDLSRILAGPWCGMVLADMGAEVIKVEHPGRGDDTRDWGLRVGKT 60 Query: 61 ETAYFNSVNRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRD 120 ETAYFNSVNRNKRS+++DLQT EGQ I R LA++ DVVIQNFKFGG+ K GL YE L ++ Sbjct: 61 ETAYFNSVNRNKRSVTLDLQTPEGQQIARDLAKQCDVVIQNFKFGGIDKLGLGYEQLSKE 120 Query: 121 NPGLVYCSITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMY 180 +PGL+YCSI+GYD +GPEA RPGYDLV+QGE+GLM+LNGEASQPPLK GVA VDLFTGMY Sbjct: 121 HPGLIYCSISGYDRTGPEAARPGYDLVVQGEAGLMALNGEASQPPLKFGVAMVDLFTGMY 180 Query: 181 SAQGVLAALYQRQQTGQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNAHPSIIPY 240 SAQ VLAALYQR++TG+GRHVEMALFDCG+MIT+YYGLEAL++G+DPPRYGN+HPSI+PY Sbjct: 181 SAQAVLAALYQREKTGKGRHVEMALFDCGLMITAYYGLEALLMGEDPPRYGNSHPSIVPY 240 Query: 241 GVFDAADGRLVITVGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLVPEINREL 300 GVFDAADG LVITVG N+Q+ RFC VI+RPDLA D RFKTN+ R +R VL+PE++ EL Sbjct: 241 GVFDAADGPLVITVGNNAQFARFCTEVIERPDLAADERFKTNILRSANRAVLLPELHAEL 300 Query: 301 KARKRADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQVLTPPYRF 360 R+RADLLARL +GIPCGEVLGL EAL S RA AGLV PH AG V VL PPYRF Sbjct: 301 ARRQRADLLARLSASGIPCGEVLGLLEALNSRRAADAGLVTEQPHPVAGKVNVLAPPYRF 360 Query: 361 DGERLPVRKAPPSLGEGTGEVLQSLLGMEEAQIAALRERGVL 402 DGERLPVR APP LGEGT EVLQSLLG+ + ++A L+ GV+ Sbjct: 361 DGERLPVRSAPPQLGEGTHEVLQSLLGLSDDRLAQLKTSGVV 402 >ref|YP_523837.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodoferax ferrireducens T118] gb|ABD70306.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodoferax ferrireducens T118] Length = 402 Score = 607 bits (1565), Expect = e-171, Method: Composition-based stats. Identities = 291/402 (72%), Positives = 335/402 (83%) Query: 1 MTEQTASLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGST 60 M +SLPLAGVRVLD SRVLAGPWC MVLGDLGAEVIKVEHPERGDDTRDWG RIG T Sbjct: 1 MPNTNSSLPLAGVRVLDFSRVLAGPWCGMVLGDLGAEVIKVEHPERGDDTRDWGLRIGLT 60 Query: 61 ETAYFNSVNRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRD 120 ETAYFNSVNRNKRSI++DLQTA+GQ+I +LA K DVVIQNFKFGG++K GL YE L Sbjct: 61 ETAYFNSVNRNKRSITLDLQTADGQEIASELAAKCDVVIQNFKFGGIEKMGLGYEQLSAQ 120 Query: 121 NPGLVYCSITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMY 180 +P L+YCSITGYD GPEA RPGYDLVIQGE+GLM+LNGEA+QPPLK GVA VD+ TGMY Sbjct: 121 HPELIYCSITGYDRKGPEAARPGYDLVIQGEAGLMALNGEANQPPLKFGVAVVDMLTGMY 180 Query: 181 SAQGVLAALYQRQQTGQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNAHPSIIPY 240 +AQ +LAAL++RQ+TGQGRH+ MALFDCG+MIT+YYGLEAL+ G+DPPRYGN HPSI+PY Sbjct: 181 AAQAILAALFERQKTGQGRHIGMALFDCGLMITAYYGLEALLKGEDPPRYGNEHPSIMPY 240 Query: 241 GVFDAADGRLVITVGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLVPEINREL 300 GV+DA DG +V+ G NSQ+ RFC+ VI+RPDL D RFKTN+ R +R +LVPEI RE+ Sbjct: 241 GVYDAQDGPVVVACGNNSQFTRFCNDVIERPDLEADERFKTNLGRSANRAILVPEIRREI 300 Query: 301 KARKRADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQVLTPPYRF 360 ARKR DLL RL +AGIPCGEV GLHEALTS RA AGLV T PH +AGSV VL PPYRF Sbjct: 301 GARKRKDLLDRLTRAGIPCGEVAGLHEALTSKRAIDAGLVTTLPHPDAGSVNVLAPPYRF 360 Query: 361 DGERLPVRKAPPSLGEGTGEVLQSLLGMEEAQIAALRERGVL 402 DG RLPVR APP LGEGT +VLQ+LLG+ + +I+ L GV+ Sbjct: 361 DGVRLPVRSAPPRLGEGTKQVLQTLLGLSDEKISQLEASGVV 402 >ref|YP_003607588.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia sp. CCGE1002] gb|ADG18077.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia sp. CCGE1002] Length = 403 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 284/401 (70%), Positives = 328/401 (81%) Query: 1 MTEQTASLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGST 60 M +SLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHP RGDDTRDWG R+G+T Sbjct: 1 MPNPISSLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPLRGDDTRDWGMRVGTT 60 Query: 61 ETAYFNSVNRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRD 120 ET YFNSVNRNKRS+ +DLQ+AEGQ I R+LA++ DVVIQNFK+GG +K GL Y L D Sbjct: 61 ETTYFNSVNRNKRSVCLDLQSAEGQRIARELAQQCDVVIQNFKYGGAEKLGLGYAQLAED 120 Query: 121 NPGLVYCSITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMY 180 L+YCSI+GYD GPEA RPGYD+V+QGE+GLM++NG A QPPLK GVAAVDLFTGMY Sbjct: 121 RDDLIYCSISGYDRQGPEAARPGYDIVVQGEAGLMAMNGNADQPPLKFGVAAVDLFTGMY 180 Query: 181 SAQGVLAALYQRQQTGQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNAHPSIIPY 240 SAQ VLAAL++RQ+TG+GRH+EMALFDCG+MITSY GL++L+L DDPPRYGNAHPSI+PY Sbjct: 181 SAQAVLAALFERQRTGKGRHIEMALFDCGLMITSYCGLDSLMLKDDPPRYGNAHPSIVPY 240 Query: 241 GVFDAADGRLVITVGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLVPEINREL 300 GVFDAADG LVI VG N QY+RFC VI+RPDL +D R++TN+ R +R+ LVPE+ R + Sbjct: 241 GVFDAADGPLVIAVGNNRQYERFCREVIERPDLIDDERYRTNIVRAVNRETLVPELTRAI 300 Query: 301 KARKRADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQVLTPPYRF 360 +R LL RL +AGIPCGEVLGLHEALTS RA AGLV T PH EAGS VL PPYRF Sbjct: 301 GLHRREVLLERLARAGIPCGEVLGLHEALTSKRAADAGLVTTCPHPEAGSTHVLAPPYRF 360 Query: 361 DGERLPVRKAPPSLGEGTGEVLQSLLGMEEAQIAALRERGV 401 DG RLPVR PP LGE T +VLQSLLG+ QI+ L+ V Sbjct: 361 DGARLPVRSGPPQLGEATHDVLQSLLGLSAGQISQLKAEEV 401 >ref|YP_001766168.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia cenocepacia MC0-3] gb|ACA92046.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia cenocepacia MC0-3] Length = 401 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 280/397 (70%), Positives = 318/397 (80%), Gaps = 1/397 (0%) Query: 1 MTEQTASLPLAGVRVLDLSRVLAGPWCAMVLGDLGAEVIKVEHPERGDDTRDWGTRIGST 60 MT + +LPLAGV+VLD SRVLAGPWCAMVL D GAEVIKVEHP RGDDTRDWG RIG T Sbjct: 1 MTNERCALPLAGVKVLDFSRVLAGPWCAMVLADFGAEVIKVEHPARGDDTRDWGLRIGDT 60 Query: 61 ETAYFNSVNRNKRSISVDLQTAEGQDIVRQLARKSDVVIQNFKFGGVQKFGLDYETLRRD 120 ET YFNSVNR+KRSI VDLQT G+ I R+LA ++DVVI NFKFGG +K GL Y+ L Sbjct: 61 ETTYFNSVNRSKRSICVDLQTEAGRRIARELAVQADVVIHNFKFGGAEKLGLGYDALAEL 120 Query: 121 NPGLVYCSITGYDSSGPEATRPGYDLVIQGESGLMSLNGEASQPPLKLGVAAVDLFTGMY 180 NP LV+C+I+GYD SG EA RPGYDLV+QGE+GLM+LNGEA QPPLK GVAAVDLFTGMY Sbjct: 121 NPRLVHCAISGYDRSGAEAARPGYDLVVQGEAGLMALNGEAGQPPLKFGVAAVDLFTGMY 180 Query: 181 SAQGVLAALYQRQQTGQGRHVEMALFDCGVMITSYYGLEALILGDDPPRYGNAHPSIIPY 240 SAQ +LAALY+R TG+GR +EMALFDCG+MIT+YYGL+AL++G+DPPRYGNAHPSI+PY Sbjct: 181 SAQAILAALYERHATGRGRRIEMALFDCGLMITAYYGLDALLMGEDPPRYGNAHPSIVPY 240 Query: 241 GVFDAADGRLVITVGTNSQYQRFCHSVIDRPDLAEDARFKTNVSRGQHRDVLVPEINREL 300 GVFDAADG LVITVG N+Q+ RFC + I+RPDLA D R+KTN+ R ++R L+PEI EL Sbjct: 241 GVFDAADGPLVITVGNNTQFARFCDA-IERPDLAADERYKTNLGRSENRADLLPEIRGEL 299 Query: 301 KARKRADLLARLHQAGIPCGEVLGLHEALTSPRATSAGLVCTHPHAEAGSVQVLTPPYRF 360 R RA LL L AGIPCGEVLGLHEALTS RAT AGLV PH AG+V VL PPYRF Sbjct: 300 ARRSRATLLTALADAGIPCGEVLGLHEALTSERATRAGLVTRQPHPVAGAVDVLAPPYRF 359 Query: 361 DGERLPVRKAPPSLGEGTGEVLQSLLGMEEAQIAALR 397 DG RLPVR APP LG T VL LGM +A LR Sbjct: 360 DGARLPVRGAPPVLGADTDAVLGGWLGMSAEDVARLR 396