BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3022.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002942761.1| acyl-CoA dehydrogenase domain-containing pro... 679 0.0 ref|YP_523840.1| acyl-CoA dehydrogenase-like protein [Rhodoferax... 672 0.0 ref|ZP_02887134.1| acyl-CoA dehydrogenase domain protein [Burkho... 671 0.0 ref|YP_003906325.1| acyl-CoA dehydrogenase domain-containing pro... 668 0.0 ref|YP_004153207.1| acyL-CoA dehydrogenase domain-containing pro... 667 0.0 >ref|YP_002942761.1| acyl-CoA dehydrogenase domain-containing protein [Variovorax paradoxus S110] gb|ACS17495.1| acyl-CoA dehydrogenase domain protein [Variovorax paradoxus S110] Length = 402 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 326/402 (81%), Positives = 358/402 (89%), Gaps = 4/402 (0%) Query: 1 MDLNFTPAEEAFRDSVRAFLAEKLPKALSDKVASGKHLSRDEMEQWHAILNERGWLANHW 60 MDLNFT EEAFR VRAFLA KLP LS+KV GK L++ +M++WHAILNERGWLANHW Sbjct: 1 MDLNFTTEEEAFRSEVRAFLAAKLPVRLSEKVRGGKILAKADMQEWHAILNERGWLANHW 60 Query: 61 PKEYGGTGWTVIEKFIFEHECCLAHAPRVVPFGVNMLGPVLIKYGNEAQKQYWLPRILNG 120 P++YGG GWT +EKFIFEHEC LA APR+VPFGVNMLGPVLIKYGNEAQK++WLPRILNG Sbjct: 61 PEQYGGPGWTAVEKFIFEHECALAFAPRIVPFGVNMLGPVLIKYGNEAQKRHWLPRILNG 120 Query: 121 EDWWCQGYSEPGAGSDLAAVKTHAVR----DGDHYIVNGQKTWTTLGHYANMIFCLVRTN 176 DWWCQGYSEPGAGSDLAAVKT AVR GDHYIVNGQKTWTTLG +ANMIFCLVRTN Sbjct: 121 ADWWCQGYSEPGAGSDLAAVKTSAVRGIDAQGDHYIVNGQKTWTTLGQHANMIFCLVRTN 180 Query: 177 REAKKQEGISFLLIDMNAPGVEVRPIITLDGEHEVNEVFFTDVRVPVQNLVGEEDRGWSC 236 REAKKQEGISFLLIDM +PGVEVRPIITLDGEHEVNEVFF+DVRVP +NLVGEE++GW+C Sbjct: 181 REAKKQEGISFLLIDMTSPGVEVRPIITLDGEHEVNEVFFSDVRVPAENLVGEENKGWTC 240 Query: 237 AKYLLTYERTNIAGIGFSVAALQRLKKIAATQRSHGRPLADDPLFAARMARVEIDLENMK 296 AKYLLTYERTNIAG+GFSVAAL++LK IAATQ +G+PLA+DP FAARMARVEIDLENMK Sbjct: 241 AKYLLTYERTNIAGVGFSVAALEQLKGIAATQTKNGKPLAEDPAFAARMARVEIDLENMK 300 Query: 297 TTNLRVISAVAGGGAPGAESSMLKIRGTEIRQEITALTRRAMGPYARPYQWHSLEEGHDG 356 TTNLRVI+AVAGGG PGAESSMLKIRGTEIRQEI++L RRAMG Y RP+ +L +G DG Sbjct: 301 TTNLRVIAAVAGGGVPGAESSMLKIRGTEIRQEISSLARRAMGVYGRPFVEEALHDGFDG 360 Query: 357 GTLGPQAAAGAAAHYFNNRKLSIFGGSNEIQKNIISKMILGL 398 T GP A+ AAA YFNNRKLSIFGGSNEIQKNIISKMILGL Sbjct: 361 ETFGPPYASAAAARYFNNRKLSIFGGSNEIQKNIISKMILGL 402 >ref|YP_523840.1| acyl-CoA dehydrogenase-like protein [Rhodoferax ferrireducens T118] gb|ABD70309.1| acyl-CoA dehydrogenase-like [Rhodoferax ferrireducens T118] Length = 402 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 321/402 (79%), Positives = 356/402 (88%), Gaps = 4/402 (0%) Query: 1 MDLNFTPAEEAFRDSVRAFLAEKLPKALSDKVASGKHLSRDEMEQWHAILNERGWLANHW 60 MDLNFTP EE FR+ VR FLA+KLP LSDKVA+GKHLS+ +M++WHAILN RGWLANHW Sbjct: 1 MDLNFTPEEEIFRNEVRTFLADKLPARLSDKVANGKHLSKADMQEWHAILNTRGWLANHW 60 Query: 61 PKEYGGTGWTVIEKFIFEHECCLAHAPRVVPFGVNMLGPVLIKYGNEAQKQYWLPRILNG 120 P YGG GW+ +EKFIFEHECCLA APR+VPFGVNMLGPVLIK+GNE QK++WLPRIL+G Sbjct: 61 PVAYGGPGWSAVEKFIFEHECCLASAPRIVPFGVNMLGPVLIKFGNETQKRHWLPRILDG 120 Query: 121 EDWWCQGYSEPGAGSDLAAVKTHAVR----DGDHYIVNGQKTWTTLGHYANMIFCLVRTN 176 DWWCQGYSE GAGSDLAAV T A+R GDHYIVNGQK WTTLG +ANMIFCLVRTN Sbjct: 121 SDWWCQGYSETGAGSDLAAVSTTALRGHDAQGDHYIVNGQKAWTTLGQHANMIFCLVRTN 180 Query: 177 REAKKQEGISFLLIDMNAPGVEVRPIITLDGEHEVNEVFFTDVRVPVQNLVGEEDRGWSC 236 REAKKQEGISFLLIDM PGVEVRP+ITLDG HEVNEVFFTDVRVP +NLVGEED+GW+C Sbjct: 181 REAKKQEGISFLLIDMTTPGVEVRPVITLDGVHEVNEVFFTDVRVPAENLVGEEDKGWTC 240 Query: 237 AKYLLTYERTNIAGIGFSVAALQRLKKIAATQRSHGRPLADDPLFAARMARVEIDLENMK 296 AKYLLTYERTNIAG+G SVAALQRLK+IAA Q +GRPLA+DP FAARMARVEIDLENMK Sbjct: 241 AKYLLTYERTNIAGVGLSVAALQRLKRIAAQQMRNGRPLAEDPSFAARMARVEIDLENMK 300 Query: 297 TTNLRVISAVAGGGAPGAESSMLKIRGTEIRQEITALTRRAMGPYARPYQWHSLEEGHDG 356 TTNLR+I+AV GGG PGAESSMLKIRGT+IRQEI++L RRAMGPYARP+ +LE+ + G Sbjct: 301 TTNLRMIAAVVGGGVPGAESSMLKIRGTQIRQEISSLNRRAMGPYARPFITEALEDDYTG 360 Query: 357 GTLGPQAAAGAAAHYFNNRKLSIFGGSNEIQKNIISKMILGL 398 +GP+AAA AAA YFNNRKLSIFGGSNEIQKNIISKMILGL Sbjct: 361 MQVGPEAAASAAALYFNNRKLSIFGGSNEIQKNIISKMILGL 402 >ref|ZP_02887134.1| acyl-CoA dehydrogenase domain protein [Burkholderia graminis C4D1M] gb|EDT07266.1| acyl-CoA dehydrogenase domain protein [Burkholderia graminis C4D1M] Length = 402 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 319/402 (79%), Positives = 355/402 (88%), Gaps = 4/402 (0%) Query: 1 MDLNFTPAEEAFRDSVRAFLAEKLPKALSDKVASGKHLSRDEMEQWHAILNERGWLANHW 60 MDLNFTP EEAFR V AFL +KLP+ L+DKV G+ L+R++M +WHAILNERGWLANHW Sbjct: 1 MDLNFTPEEEAFRAEVLAFLRDKLPRRLADKVHGGRRLTREDMAEWHAILNERGWLANHW 60 Query: 61 PKEYGGTGWTVIEKFIFEHECCLAHAPRVVPFGVNMLGPVLIKYGNEAQKQYWLPRILNG 120 P+EYGG GW ++KFIFE+EC LA APRVVPFGVNMLGPVLIKYG++AQK +WLPRIL+G Sbjct: 61 PEEYGGPGWNAVQKFIFENECALAGAPRVVPFGVNMLGPVLIKYGSDAQKHHWLPRILDG 120 Query: 121 EDWWCQGYSEPGAGSDLAAVKTHAVR----DGDHYIVNGQKTWTTLGHYANMIFCLVRTN 176 DWWCQGYSEPGAGSDLA+VKT AVR DG+HYIVNGQKTWTTLGHYANMIFCLVRT Sbjct: 121 SDWWCQGYSEPGAGSDLASVKTTAVRGVDADGEHYIVNGQKTWTTLGHYANMIFCLVRTA 180 Query: 177 REAKKQEGISFLLIDMNAPGVEVRPIITLDGEHEVNEVFFTDVRVPVQNLVGEEDRGWSC 236 + +KQEGISFLLIDM PGVEVRPIITLDGEHEVNEVFFTDVRVP NLVGEE++GW+ Sbjct: 181 TDVRKQEGISFLLIDMKTPGVEVRPIITLDGEHEVNEVFFTDVRVPAANLVGEENKGWTY 240 Query: 237 AKYLLTYERTNIAGIGFSVAALQRLKKIAATQRSHGRPLADDPLFAARMARVEIDLENMK 296 AKYLLTYERTNIAG+GFSVAA RL+KIAA QR +GRPLADDP FAARMARVEIDLENMK Sbjct: 241 AKYLLTYERTNIAGVGFSVAAFNRLRKIAAKQRRNGRPLADDPSFAARMARVEIDLENMK 300 Query: 297 TTNLRVISAVAGGGAPGAESSMLKIRGTEIRQEITALTRRAMGPYARPYQWHSLEEGHDG 356 TTNLRVI+AVAGGG PGAESSMLKIRGTEIRQEI++LTRRAMGPYA+P+ +L +G+ G Sbjct: 301 TTNLRVIAAVAGGGVPGAESSMLKIRGTEIRQEISSLTRRAMGPYAQPFIEEALHDGYQG 360 Query: 357 GTLGPQAAAGAAAHYFNNRKLSIFGGSNEIQKNIISKMILGL 398 +GP AA AA+ YFNNRKLSIFGGSNEIQKNIISKMILGL Sbjct: 361 APVGPDEAASAASQYFNNRKLSIFGGSNEIQKNIISKMILGL 402 >ref|YP_003906325.1| acyl-CoA dehydrogenase domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN57034.1| acyl-CoA dehydrogenase domain-containing protein [Burkholderia sp. CCGE1003] Length = 402 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 318/402 (79%), Positives = 358/402 (89%), Gaps = 4/402 (0%) Query: 1 MDLNFTPAEEAFRDSVRAFLAEKLPKALSDKVASGKHLSRDEMEQWHAILNERGWLANHW 60 MDLNFTP EEAFR V AFL E+LP+ L+DKV G+ L+R++M QWHAILNERGWLANHW Sbjct: 1 MDLNFTPEEEAFRAEVLAFLRERLPQRLADKVQGGRRLTREDMAQWHAILNERGWLANHW 60 Query: 61 PKEYGGTGWTVIEKFIFEHECCLAHAPRVVPFGVNMLGPVLIKYGNEAQKQYWLPRILNG 120 PKEYGG GW+ ++KFIFE+EC LA APR+VPFGVNMLGPVLIKYG++AQK++WLPRIL+G Sbjct: 61 PKEYGGPGWSPVQKFIFENECALAGAPRIVPFGVNMLGPVLIKYGSDAQKRHWLPRILDG 120 Query: 121 EDWWCQGYSEPGAGSDLAAVKTHAVR----DGDHYIVNGQKTWTTLGHYANMIFCLVRTN 176 DWWCQGYSEPGAGSDLA+VKT AVR +G+HYIVNGQKTWTTLGHYANMIFCLVRT Sbjct: 121 SDWWCQGYSEPGAGSDLASVKTTAVRGVDANGEHYIVNGQKTWTTLGHYANMIFCLVRTA 180 Query: 177 REAKKQEGISFLLIDMNAPGVEVRPIITLDGEHEVNEVFFTDVRVPVQNLVGEEDRGWSC 236 + +KQEGISFLLIDM PGVEVRPIITLDGEHEVNEVFFTDVRVPV NLVGEE++GW+ Sbjct: 181 TDVRKQEGISFLLIDMKTPGVEVRPIITLDGEHEVNEVFFTDVRVPVANLVGEENKGWTY 240 Query: 237 AKYLLTYERTNIAGIGFSVAALQRLKKIAATQRSHGRPLADDPLFAARMARVEIDLENMK 296 AKYLLTYERTNIAG+GFSVAA RL+KIAA QR +GRPLA+DP FAARMARVEIDLENMK Sbjct: 241 AKYLLTYERTNIAGVGFSVAAFNRLRKIAAKQRRNGRPLAEDPSFAARMARVEIDLENMK 300 Query: 297 TTNLRVISAVAGGGAPGAESSMLKIRGTEIRQEITALTRRAMGPYARPYQWHSLEEGHDG 356 TTNLRVI+AVAGGG PGAESSMLKIRGT+IRQEI++LTRRAMG YA+P+ +L EG+ G Sbjct: 301 TTNLRVIAAVAGGGVPGAESSMLKIRGTQIRQEISSLTRRAMGAYAQPFVEEALHEGYQG 360 Query: 357 GTLGPQAAAGAAAHYFNNRKLSIFGGSNEIQKNIISKMILGL 398 +GP+ AA AA+ YFNNRKLSIFGGSNEIQKNIISKMILGL Sbjct: 361 VPVGPEEAASAASQYFNNRKLSIFGGSNEIQKNIISKMILGL 402 >ref|YP_004153207.1| acyL-CoA dehydrogenase domain-containing protein [Variovorax paradoxus EPS] gb|ADU35096.1| acyl-CoA dehydrogenase domain-containing protein [Variovorax paradoxus EPS] Length = 405 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 327/405 (80%), Positives = 357/405 (88%), Gaps = 7/405 (1%) Query: 1 MDLNFTPAEEAFRDSVRAFLAEKLPKALSDKVASGKHLSRDEMEQWHAILNERGWLANHW 60 MDLNFT EEAFR VRAFLA+KLP LS KV+ G+ LS+ +M++WHAILNERGWLANHW Sbjct: 1 MDLNFTSEEEAFRAEVRAFLADKLPARLSAKVSGGQILSKADMQEWHAILNERGWLANHW 60 Query: 61 PKEYGGTGWTVIEKFIFEHECCLAHAPRVVPFGVNMLGPVLIKYGNEAQKQYWLPRILNG 120 P++YGG GWT +EKFIFEHEC LA APR+VPFGVNMLGPVLIKYGNEAQKQ WLPRIL+G Sbjct: 61 PEQYGGPGWTAVEKFIFEHECALAFAPRIVPFGVNMLGPVLIKYGNEAQKQRWLPRILDG 120 Query: 121 EDWWCQGYSEPGAGSDLAAVKTHAVRD----GDHYIVNGQKTWTTLGHYANMIFCLVRTN 176 DWWCQGYSEPGAGSDLAAVKT AVRD GDHYIVNGQKTWTTLG +ANMIFCLVRTN Sbjct: 121 SDWWCQGYSEPGAGSDLAAVKTSAVRDIDAQGDHYIVNGQKTWTTLGQHANMIFCLVRTN 180 Query: 177 REAKKQEGISFLLIDMNAPGVEVRPIITLDGEHEVNEVFFTDVRVPVQNLVGEEDRGWSC 236 REAKKQEGISFLLIDM APGVEVRPIITLDGEHEVNEVFF+DVRVP +NLVGEE++GW+C Sbjct: 181 REAKKQEGISFLLIDMTAPGVEVRPIITLDGEHEVNEVFFSDVRVPAENLVGEENKGWTC 240 Query: 237 AKYLLTYERTNIAGIGFSVAALQRLKKIAATQRSHGRPLADDPLFAARMARVEIDLENMK 296 AKYLLTYERTNIAG+GFSVAAL++LK IAA Q +GRPLA+DP FAARMARVEIDLENMK Sbjct: 241 AKYLLTYERTNIAGVGFSVAALEQLKGIAAKQVKNGRPLAEDPSFAARMARVEIDLENMK 300 Query: 297 TTNLRVISAVAGGGAPGAESSMLKIRGTEIRQEITALTRRAMGPYARPYQWHSLEEGHD- 355 TTNLRVI+AVAGGG PGAESSMLKIRGTEIRQEI++L RRAMG Y RP+ +L +G+ Sbjct: 301 TTNLRVIAAVAGGGVPGAESSMLKIRGTEIRQEISSLARRAMGVYGRPFVEEALHDGYTE 360 Query: 356 --GGTLGPQAAAGAAAHYFNNRKLSIFGGSNEIQKNIISKMILGL 398 G T GP A AAA YFNNRKLSIFGGSNEIQKNIISKMILGL Sbjct: 361 KGGETFGPAYAKAAAARYFNNRKLSIFGGSNEIQKNIISKMILGL 405