BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3020.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_523842.1| 3-hydroxyacyl-CoA dehydrogenase [Rhodoferax fer... 640 0.0 ref|YP_001896354.1| 3-hydroxyacyl-CoA dehydrogenase [Burkholderi... 627 e-178 ref|YP_002942763.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase ... 627 e-178 ref|YP_003906326.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding ... 624 e-177 ref|YP_004228879.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding ... 617 e-174 >ref|YP_523842.1| 3-hydroxyacyl-CoA dehydrogenase [Rhodoferax ferrireducens T118] gb|ABD70311.1| 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase [Rhodoferax ferrireducens T118] Length = 706 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 318/391 (81%), Positives = 353/391 (90%) Query: 5 IAVAVLDAGLPVTMIERDDEALARGRGHVEKVYDAQVAKGRLTQEARDAVLARLQGSTRY 64 IAVAVLDAGL VTMIERD+ ALARG H+EKVY+ +AKGR+T +A+ A LAR GST Y Sbjct: 315 IAVAVLDAGLSVTMIERDEAALARGHAHIEKVYNGLIAKGRMTTDAKAANLARFVGSTSY 374 Query: 65 EDLSTADVVIEAVFEDLTVKQAVFAELDRVCKPGAVLATNTSYLDIDAIAASISRPADVI 124 + L+ AD+VIEAVFED+ VKQAVFAELDRVCKPGAVLATNTSYLDID IAASISRPADV+ Sbjct: 375 DALAPADIVIEAVFEDMAVKQAVFAELDRVCKPGAVLATNTSYLDIDVIAASISRPADVV 434 Query: 125 GLHFFSPANVMKLLEIVVPRQVTGDVVATAFELAKRLRKVPVRAGVCDGFIGNRILAVYR 184 GLHFFSPAN+MKLLEIVVP +V+ DVVATAFELAK+L KVPVRAGVCDGFIGNRILA YR Sbjct: 435 GLHFFSPANIMKLLEIVVPAKVSADVVATAFELAKKLHKVPVRAGVCDGFIGNRILAAYR 494 Query: 185 QAADALMEDGASPYEIDAAVRDFGFAMGPYQVVDLAGGDIGWATRKRRAATRDPRARYVH 244 AAD +MEDGASPY+ID AVRDFG+ MGP+QV DLAGGDIGWATRKR+AATRDPRARYV Sbjct: 495 MAADYMMEDGASPYQIDQAVRDFGYPMGPFQVSDLAGGDIGWATRKRKAATRDPRARYVQ 554 Query: 245 IADRLCERGWFGQKSGRGFYRYPDGPRSGAPDPEVLALIDEERARAGITPRSFSKEDIQR 304 IADR+CERGWFGQK+GRG+Y YP+G R+G PDPE+ A+ID ERARAGITPRSF+ E+I R Sbjct: 555 IADRICERGWFGQKTGRGYYLYPEGARTGTPDPEIEAIIDAERARAGITPRSFTNEEIMR 614 Query: 305 RYLAAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADMVGLPNVLADIRA 364 RY+AAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYAD +GLP VLADIR Sbjct: 615 RYMAAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADTLGLPKVLADIRE 674 Query: 365 FAAEDPLFWTPSPLLVELVERGANFESLNQA 395 FA EDPLFW PSPLLVELVERGANF+SLN++ Sbjct: 675 FAKEDPLFWQPSPLLVELVERGANFDSLNKS 705 >ref|YP_001896354.1| 3-hydroxyacyl-CoA dehydrogenase [Burkholderia phytofirmans PsJN] gb|ACD17130.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Burkholderia phytofirmans PsJN] Length = 706 Score = 627 bits (1618), Expect = e-178, Method: Composition-based stats. Identities = 326/395 (82%), Positives = 361/395 (91%) Query: 1 MGAGIAVAVLDAGLPVTMIERDDEALARGRGHVEKVYDAQVAKGRLTQEARDAVLARLQG 60 MGAGIAVAVLDAGLPVTMIERDD +LARGR H+EKVYD +AKGRL+ E + A+++R G Sbjct: 311 MGAGIAVAVLDAGLPVTMIERDDASLARGRAHIEKVYDGLIAKGRLSAEKKAALMSRWSG 370 Query: 61 STRYEDLSTADVVIEAVFEDLTVKQAVFAELDRVCKPGAVLATNTSYLDIDAIAASISRP 120 ST Y+ L+ AD+VIEAVFEDL VKQAVFAELDRVCK GAVLATNTSYLDIDA+A+S+SRP Sbjct: 371 STSYDALAGADLVIEAVFEDLAVKQAVFAELDRVCKAGAVLATNTSYLDIDALASSVSRP 430 Query: 121 ADVIGLHFFSPANVMKLLEIVVPRQVTGDVVATAFELAKRLRKVPVRAGVCDGFIGNRIL 180 ADVIGLHFFSPAN+MKLLE+VVP+QV+ DVVATAFELAK+LRK PVRAGVCDGFIGNR+L Sbjct: 431 ADVIGLHFFSPANIMKLLEVVVPKQVSADVVATAFELAKKLRKTPVRAGVCDGFIGNRVL 490 Query: 181 AVYRQAADALMEDGASPYEIDAAVRDFGFAMGPYQVVDLAGGDIGWATRKRRAATRDPRA 240 AVYR AADA+MEDGASPY+IDAAVR FGF MGP+QVVDLAGGDIGWA RKRRAATR+P A Sbjct: 491 AVYRSAADAMMEDGASPYQIDAAVRAFGFPMGPFQVVDLAGGDIGWAARKRRAATRNPAA 550 Query: 241 RYVHIADRLCERGWFGQKSGRGFYRYPDGPRSGAPDPEVLALIDEERARAGITPRSFSKE 300 RYV IADRLCERGWFGQKSGRGFY YP+G RSG PDPEV A+ID ERARAGITPRSF+ E Sbjct: 551 RYVQIADRLCERGWFGQKSGRGFYLYPEGSRSGTPDPEVEAIIDAERARAGITPRSFTDE 610 Query: 301 DIQRRYLAAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADMVGLPNVLA 360 +I RRY+AAMINEGANVVH+RIALRPLDVDVTFLYGYGFPR+RGGPMKYADMVGLP +LA Sbjct: 611 EIIRRYMAAMINEGANVVHERIALRPLDVDVTFLYGYGFPRYRGGPMKYADMVGLPKILA 670 Query: 361 DIRAFAAEDPLFWTPSPLLVELVERGANFESLNQA 395 DIR FA EDPLFW PSPLL+ELVERGA+F SLNQ+ Sbjct: 671 DIREFAKEDPLFWKPSPLLIELVERGADFASLNQS 705 >ref|YP_002942763.1| NAD-binding 3-hydroxyacyl-CoA dehydrogenase [Variovorax paradoxus S110] gb|ACS17497.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding [Variovorax paradoxus S110] Length = 711 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 314/395 (79%), Positives = 354/395 (89%) Query: 1 MGAGIAVAVLDAGLPVTMIERDDEALARGRGHVEKVYDAQVAKGRLTQEARDAVLARLQG 60 MGAGIAVA+LDAGLPVTMIERD+ +LARGR HVEKVYD + KGR+T EA+ AV+AR G Sbjct: 316 MGAGIAVAMLDAGLPVTMIERDEPSLARGRQHVEKVYDGLIKKGRMTPEAKTAVMARFSG 375 Query: 61 STRYEDLSTADVVIEAVFEDLTVKQAVFAELDRVCKPGAVLATNTSYLDIDAIAASISRP 120 ST Y+ L+ D+V+EAVFED+ VK+AVFAELDRVCK GAVLATNTSYLDID IA SISRP Sbjct: 376 STSYDALAQVDIVVEAVFEDMGVKKAVFAELDRVCKRGAVLATNTSYLDIDEIAESISRP 435 Query: 121 ADVIGLHFFSPANVMKLLEIVVPRQVTGDVVATAFELAKRLRKVPVRAGVCDGFIGNRIL 180 DV+GLHFFSPAN+MKLLEIVVP +V+ DVVAT FELAK+L+KVPVRAGVCDGFIGNRIL Sbjct: 436 QDVVGLHFFSPANIMKLLEIVVPAKVSADVVATGFELAKKLKKVPVRAGVCDGFIGNRIL 495 Query: 181 AVYRQAADALMEDGASPYEIDAAVRDFGFAMGPYQVVDLAGGDIGWATRKRRAATRDPRA 240 AVYRQAAD +MEDGASPY+ID AVR+FG+ MGP+QV DLAGGDIGWATRKR+AATRDP+A Sbjct: 496 AVYRQAADHMMEDGASPYQIDEAVRNFGYPMGPFQVSDLAGGDIGWATRKRKAATRDPQA 555 Query: 241 RYVHIADRLCERGWFGQKSGRGFYRYPDGPRSGAPDPEVLALIDEERARAGITPRSFSKE 300 RYV IADR+CERGWFGQK+ RG+Y YP+G R+G PDPEVLA+ID ER RAGITPR+F++E Sbjct: 556 RYVQIADRICERGWFGQKTQRGYYLYPEGARTGQPDPEVLAIIDAERERAGITPRTFTEE 615 Query: 301 DIQRRYLAAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADMVGLPNVLA 360 +I RRY+AAMINEGANVV QRIALRPLDVDVTFLYGYGFPRHRGGPMKYAD VGLP VLA Sbjct: 616 EIMRRYMAAMINEGANVVLQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADTVGLPKVLA 675 Query: 361 DIRAFAAEDPLFWTPSPLLVELVERGANFESLNQA 395 DIR FA EDP+FW PSPLLVEL ERGA+F SLNQ+ Sbjct: 676 DIREFAKEDPIFWKPSPLLVELAERGADFASLNQS 710 >ref|YP_003906326.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Burkholderia sp. CCGE1003] gb|ADN57035.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Burkholderia sp. CCGE1003] Length = 706 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 320/394 (81%), Positives = 351/394 (89%) Query: 1 MGAGIAVAVLDAGLPVTMIERDDEALARGRGHVEKVYDAQVAKGRLTQEARDAVLARLQG 60 MGAGIAVAVL AGLPVTMIERD+ +LARGR H+EKVYD +AKGR++ + +LAR G Sbjct: 311 MGAGIAVAVLGAGLPVTMIERDEASLARGRAHIEKVYDGLIAKGRMSAAKKAELLARFTG 370 Query: 61 STRYEDLSTADVVIEAVFEDLTVKQAVFAELDRVCKPGAVLATNTSYLDIDAIAASISRP 120 ST +E L+ AD+VIEAVFEDL VKQAVFAELDRVCK GAVLATNTSYLDIDAIAA SRP Sbjct: 371 STSHEALANADLVIEAVFEDLAVKQAVFAELDRVCKAGAVLATNTSYLDIDAIAAGTSRP 430 Query: 121 ADVIGLHFFSPANVMKLLEIVVPRQVTGDVVATAFELAKRLRKVPVRAGVCDGFIGNRIL 180 ADVIGLHFFSPAN+MKLLE+VVPR V+ DVVATAFELAK+LRK PVRAGVCDGFIGNRIL Sbjct: 431 ADVIGLHFFSPANIMKLLEVVVPRAVSADVVATAFELAKKLRKTPVRAGVCDGFIGNRIL 490 Query: 181 AVYRQAADALMEDGASPYEIDAAVRDFGFAMGPYQVVDLAGGDIGWATRKRRAATRDPRA 240 AVYR AADA+MEDGASPY+IDAAVR FGF MGP+QVVDLAGGDIGWA RKRRA TR+P A Sbjct: 491 AVYRSAADAMMEDGASPYQIDAAVRAFGFPMGPFQVVDLAGGDIGWAARKRRAPTRNPAA 550 Query: 241 RYVHIADRLCERGWFGQKSGRGFYRYPDGPRSGAPDPEVLALIDEERARAGITPRSFSKE 300 RYV IADRLCERGWFGQK+GRGFY YP+G RSG PDPEV A+ID ERARAGITPR+F+ + Sbjct: 551 RYVQIADRLCERGWFGQKTGRGFYLYPEGSRSGQPDPEVEAIIDIERARAGITPRTFTDD 610 Query: 301 DIQRRYLAAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADMVGLPNVLA 360 +I RRY+AAMINEGANVVH+ IALRPLDVDVTFLYGYGFPR+RGGPMKYADMVGLP +LA Sbjct: 611 EIIRRYMAAMINEGANVVHEGIALRPLDVDVTFLYGYGFPRYRGGPMKYADMVGLPRILA 670 Query: 361 DIRAFAAEDPLFWTPSPLLVELVERGANFESLNQ 394 DIR FA EDPLFW SPLLVELVERGA+F SLNQ Sbjct: 671 DIREFAKEDPLFWQASPLLVELVERGADFASLNQ 704 >ref|YP_004228879.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein [Burkholderia sp. CCGE1001] gb|ADX55819.1| 3-hydroxyacyl-CoA dehydrogenase NAD-binding protein protein [Burkholderia sp. CCGE1001] Length = 706 Score = 617 bits (1591), Expect = e-174, Method: Composition-based stats. Identities = 326/394 (82%), Positives = 355/394 (90%) Query: 1 MGAGIAVAVLDAGLPVTMIERDDEALARGRGHVEKVYDAQVAKGRLTQEARDAVLARLQG 60 MGAGIAVAVLDAGLPVTMIERD+ +LARGR H+EKVYD +AKGR++ E + ++AR G Sbjct: 311 MGAGIAVAVLDAGLPVTMIERDEASLARGRAHIEKVYDGLIAKGRMSAEKKAELMARWTG 370 Query: 61 STRYEDLSTADVVIEAVFEDLTVKQAVFAELDRVCKPGAVLATNTSYLDIDAIAASISRP 120 ST YE L+ AD+VIEAVFEDL VKQAVFAELDRVCK GAVLATNTSYLDIDAIAA ISRP Sbjct: 371 STSYEALANADLVIEAVFEDLAVKQAVFAELDRVCKAGAVLATNTSYLDIDAIAAGISRP 430 Query: 121 ADVIGLHFFSPANVMKLLEIVVPRQVTGDVVATAFELAKRLRKVPVRAGVCDGFIGNRIL 180 ADVIGLHFFSPAN+MKLLE+VVPR V+ DVVATAFELAK+LRK PVRAGVCDGFIGNRIL Sbjct: 431 ADVIGLHFFSPANIMKLLEVVVPRAVSADVVATAFELAKKLRKTPVRAGVCDGFIGNRIL 490 Query: 181 AVYRQAADALMEDGASPYEIDAAVRDFGFAMGPYQVVDLAGGDIGWATRKRRAATRDPRA 240 AVYR AADA+MEDGASPY+IDAAVR FGF MGP+QVVDLAGGDIGWA RKRRAATR+P A Sbjct: 491 AVYRSAADAMMEDGASPYQIDAAVRAFGFPMGPFQVVDLAGGDIGWAARKRRAATRNPAA 550 Query: 241 RYVHIADRLCERGWFGQKSGRGFYRYPDGPRSGAPDPEVLALIDEERARAGITPRSFSKE 300 RYV IADRLCERGWFGQK+GRGFY YP+G RSG PDPEV A+ID ERARAGITPRSF+ + Sbjct: 551 RYVQIADRLCERGWFGQKTGRGFYLYPEGSRSGQPDPEVEAIIDAERARAGITPRSFTDD 610 Query: 301 DIQRRYLAAMINEGANVVHQRIALRPLDVDVTFLYGYGFPRHRGGPMKYADMVGLPNVLA 360 +I RRY+AAMINEGANVVH+RIALRPLDVDVT LYGYGFPR+RGGPMKYADMVGLP VLA Sbjct: 611 EIMRRYMAAMINEGANVVHERIALRPLDVDVTLLYGYGFPRYRGGPMKYADMVGLPRVLA 670 Query: 361 DIRAFAAEDPLFWTPSPLLVELVERGANFESLNQ 394 DIR FA EDPLFW SPLLVELVERGA+F SLNQ Sbjct: 671 DIREFAKEDPLFWQASPLLVELVERGADFASLNQ 704