BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3018.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_523843.1| IclR family transcriptional regulator [Rhodofer... 419 e-115 ref|YP_158053.1| transcriptional regulator [Aromatoleum aromatic... 374 e-102 ref|YP_001229317.1| regulatory protein IclR [Geobacter uraniired... 322 4e-86 ref|ZP_00053317.2| COG1414: Transcriptional regulator [Magnetosp... 300 1e-79 ref|YP_421961.1| transcriptional regulator [Magnetospirillum mag... 300 2e-79 >ref|YP_523843.1| IclR family transcriptional regulator [Rhodoferax ferrireducens T118] gb|ABD70312.1| transcriptional regulator, IclR family [Rhodoferax ferrireducens T118] Length = 268 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 197/265 (74%), Positives = 231/265 (87%) Query: 2 DEIVSFKGEDESHDRQFVNALARGLEILRCFRPGEIYLTNTELAKRTGLPKPTISRLTHT 61 D+I +F + DRQFVNALARGLEILRCF PGE YL+NTELAKRTG+PKPTISRLT+T Sbjct: 3 DQIQTFSDDTVVKDRQFVNALARGLEILRCFLPGEKYLSNTELAKRTGMPKPTISRLTYT 62 Query: 62 LTRLGYLEYSEDQGRYQLGSGVLALGYSLLSGMDVRKLARPAMQELADYSQCNVALGIRD 121 LT+LGYL +S+D+G+Y LGSGVL+LG SLLS +DVRKLARPAM+ELA++SQ +VA+GIRD Sbjct: 63 LTKLGYLGFSDDRGQYHLGSGVLSLGNSLLSNLDVRKLARPAMRELAEHSQASVAIGIRD 122 Query: 122 RLSMVYIEATRGQSAVTLRRDVGSRIPLATTSMGRALLCALPQNERDFLMDHIRLRNEEQ 181 RL MVYIE R SAVTLRRDVGSRIP+ATT+MG+ALLCAL Q ERDFLMDHIRL NEE+ Sbjct: 123 RLDMVYIETCRSSSAVTLRRDVGSRIPIATTAMGKALLCALSQTERDFLMDHIRLENEEK 182 Query: 182 WPKVKAGIEQAFKDYQDHGFCISVGEWEKTISAVGVPMIDANEEKIMAFNCGGPAFMLTR 241 WP++KA +EQAFKDYQDHGFCI+VG+WE I+AVGVP+ID N E++MAFNCGGPAF+L R Sbjct: 183 WPQIKASLEQAFKDYQDHGFCIAVGDWESNINAVGVPLIDPNGEEMMAFNCGGPAFLLPR 242 Query: 242 EMLMEDLGPRLVNVVRTVEASMGRH 266 + LM DLGPRLV +V VE SMGRH Sbjct: 243 DALMNDLGPRLVQLVHNVEVSMGRH 267 >ref|YP_158053.1| transcriptional regulator [Aromatoleum aromaticum EbN1] emb|CAI07152.1| Transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 285 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 176/264 (66%), Positives = 222/264 (84%) Query: 2 DEIVSFKGEDESHDRQFVNALARGLEILRCFRPGEIYLTNTELAKRTGLPKPTISRLTHT 61 D+I F ++ES DRQFVNALARGLE+LRCFRPG+ L+N ELA+RTGLPKPTISRLTHT Sbjct: 21 DDIQVFADDEESKDRQFVNALARGLELLRCFRPGDTELSNAELARRTGLPKPTISRLTHT 80 Query: 62 LTRLGYLEYSEDQGRYQLGSGVLALGYSLLSGMDVRKLARPAMQELADYSQCNVALGIRD 121 LT+LGYL +SE +G Y+L +GVLALGY+LLS +DVRK+ARP M+EL++Y+Q +V++G RD Sbjct: 81 LTKLGYLGFSESRGTYRLAAGVLALGYALLSNLDVRKVARPYMEELSEYAQVSVSIGARD 140 Query: 122 RLSMVYIEATRGQSAVTLRRDVGSRIPLATTSMGRALLCALPQNERDFLMDHIRLRNEEQ 181 RLS+VYIE+ R + VTLR DVGSRIPLAT+++GRALLC LPQ ERD+LMDHIRLR+EE Sbjct: 141 RLSIVYIESCRSSANVTLRLDVGSRIPLATSAVGRALLCGLPQGERDYLMDHIRLRDEEN 200 Query: 182 WPKVKAGIEQAFKDYQDHGFCISVGEWEKTISAVGVPMIDANEEKIMAFNCGGPAFMLTR 241 WP+VKAGIEQA +DY + GF +S G+W+K + AVGVPM + E+ MAFNCGGPAF+L+R Sbjct: 201 WPRVKAGIEQALRDYHERGFVVSAGDWQKDVHAVGVPMTGVDGERAMAFNCGGPAFLLSR 260 Query: 242 EMLMEDLGPRLVNVVRTVEASMGR 265 E L+ ++GPRLV +V VEA +GR Sbjct: 261 ERLIGEVGPRLVELVHKVEADLGR 284 >ref|YP_001229317.1| regulatory protein IclR [Geobacter uraniireducens Rf4] gb|ABQ24744.1| regulatory protein, IclR [Geobacter uraniireducens Rf4] Length = 265 Score = 322 bits (825), Expect = 4e-86, Method: Composition-based stats. Identities = 149/255 (58%), Positives = 198/255 (77%) Query: 12 ESHDRQFVNALARGLEILRCFRPGEIYLTNTELAKRTGLPKPTISRLTHTLTRLGYLEYS 71 E +DRQ + AL RGLE+LRCF+PG+ L N E+A RTGLPKPT+SRLT+TLT+LGYL YS Sbjct: 10 EENDRQSIRALERGLEVLRCFKPGDRLLGNQEIAARTGLPKPTVSRLTYTLTKLGYLSYS 69 Query: 72 EDQGRYQLGSGVLALGYSLLSGMDVRKLARPAMQELADYSQCNVALGIRDRLSMVYIEAT 131 E G+Y L S VLALGYS L+ +DVR++ARP MQEL +Y+Q +V +G++DRL+M+Y+EA Sbjct: 70 EKFGKYYLDSAVLALGYSFLANLDVRRIARPFMQELGEYAQASVTIGVQDRLNMLYVEAY 129 Query: 132 RGQSAVTLRRDVGSRIPLATTSMGRALLCALPQNERDFLMDHIRLRNEEQWPKVKAGIEQ 191 R + VTL VGS+IP+ATTSMGRALLCALP+ ER LM+ IRLRNE WP++ AGIEQ Sbjct: 130 RSSAMVTLTLGVGSQIPIATTSMGRALLCALPEAERASLMEQIRLRNEADWPRINAGIEQ 189 Query: 192 AFKDYQDHGFCISVGEWEKTISAVGVPMIDANEEKIMAFNCGGPAFMLTREMLMEDLGPR 251 A KDY + GFC+S+G+W+K + AV P++ + +I+ F+C G AF L R ML +D+GPR Sbjct: 190 ALKDYAELGFCLSLGDWKKDVHAVATPLVPTDGSRILVFSCVGAAFQLRRHMLEDDIGPR 249 Query: 252 LVNVVRTVEASMGRH 266 L+N+V V+ ++ RH Sbjct: 250 LLNLVTNVKEALDRH 264 >ref|ZP_00053317.2| COG1414: Transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 260 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 142/255 (55%), Positives = 194/255 (76%) Query: 11 DESHDRQFVNALARGLEILRCFRPGEIYLTNTELAKRTGLPKPTISRLTHTLTRLGYLEY 70 +E+ DRQFV AL+RGL++LRCFR G+ L N E+A RTGLPKPT+SRLT+TLT+LGYL Y Sbjct: 5 EETQDRQFVVALSRGLDVLRCFRAGDAMLGNQEIAARTGLPKPTVSRLTYTLTKLGYLTY 64 Query: 71 SEDQGRYQLGSGVLALGYSLLSGMDVRKLARPAMQELADYSQCNVALGIRDRLSMVYIEA 130 + +YQLG+ VL+LGY+ L+GMD+R +ARP MQELADYS V+LG D+ SM+YIE+ Sbjct: 65 IDRYAKYQLGTAVLSLGYTALAGMDIRHVARPLMQELADYSDVAVSLGSGDQTSMIYIES 124 Query: 131 TRGQSAVTLRRDVGSRIPLATTSMGRALLCALPQNERDFLMDHIRLRNEEQWPKVKAGIE 190 RG+ A+T+R VGSRIP+ATT+MGRA L L + ER ++D +R R+ + WP++K+G+E Sbjct: 125 CRGKGALTIRLAVGSRIPVATTAMGRAYLAGLAETERTPILDEVRKRHPDDWPRIKSGLE 184 Query: 191 QAFKDYQDHGFCISVGEWEKTISAVGVPMIDANEEKIMAFNCGGPAFMLTREMLMEDLGP 250 +A ++Y GF +SVG+W+ + AVGV + + +MA NCGG AF+L RE L +DLGP Sbjct: 185 RALREYAARGFTMSVGDWQSDVHAVGVALTNPATGVVMALNCGGAAFLLPRERLEDDLGP 244 Query: 251 RLVNVVRTVEASMGR 265 RLV V R +EA++GR Sbjct: 245 RLVAVARKIEAALGR 259 >ref|YP_421961.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] dbj|BAE51402.1| Transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 270 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 141/253 (55%), Positives = 191/253 (75%) Query: 13 SHDRQFVNALARGLEILRCFRPGEIYLTNTELAKRTGLPKPTISRLTHTLTRLGYLEYSE 72 + DRQFV AL+RGLE+LRCFR + L N E+A RTGLPKPT+SRLT+TLT+LGYL Y + Sbjct: 17 TQDRQFVVALSRGLEVLRCFRANDAMLGNQEIAARTGLPKPTVSRLTYTLTKLGYLVYMD 76 Query: 73 DQGRYQLGSGVLALGYSLLSGMDVRKLARPAMQELADYSQCNVALGIRDRLSMVYIEATR 132 +Y+LG+ VL+LGY+ L+GMD+R +ARP MQELADYS V+LG DR SM+Y+E+ R Sbjct: 77 HYSKYKLGTAVLSLGYTALAGMDIRHVARPLMQELADYSDVAVSLGSHDRTSMIYVESCR 136 Query: 133 GQSAVTLRRDVGSRIPLATTSMGRALLCALPQNERDFLMDHIRLRNEEQWPKVKAGIEQA 192 G+ A+T+R VGSRIP+ATT+MGRA L A P+ ER ++D ++ R+ E WP+++ G+E+A Sbjct: 137 GKGALTIRLSVGSRIPVATTAMGRAFLAATPEAERTAILDEVKKRHPEDWPRIRQGLERA 196 Query: 193 FKDYQDHGFCISVGEWEKTISAVGVPMIDANEEKIMAFNCGGPAFMLTREMLMEDLGPRL 252 F++Y GF +SVG+W+ + AVGV + + I+A NCGG AF+L RE L DLGPRL Sbjct: 197 FREYAARGFTMSVGDWQSDVHAVGVALTNPATGTIVALNCGGAAFLLPRERLEGDLGPRL 256 Query: 253 VNVVRTVEASMGR 265 V V R +EA++GR Sbjct: 257 VAVARKIEAALGR 269