BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3017.p (442 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_523836.1| extracellular ligand-binding receptor [Rhodofer... 599 e-169 ref|YP_421964.1| ABC-type branched-chain amino acid transport sy... 469 e-130 ref|ZP_00052710.1| COG0683: ABC-type branched-chain amino acid t... 463 e-128 ref|YP_001525788.1| branched-chain amino acid ABC transporter pe... 412 e-113 ref|YP_003808019.1| extracellular ligand-binding receptor [Desul... 105 2e-20 >ref|YP_523836.1| extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] gb|ABD70305.1| Extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] Length = 390 Score = 599 bits (1545), Expect = e-169, Method: Composition-based stats. Identities = 305/394 (77%), Positives = 345/394 (87%), Gaps = 5/394 (1%) Query: 49 MTNKHQGIRRLALLACIASALAAGAGSAAADELKVGVEIPLTGSLARVGSGMQEGINVAA 108 M N + I AL+AC G +A ADEL VGVE+PLTG+LARVG+GM EGI VAA Sbjct: 2 MKNTCKSIGLAALVAC-----GLGLSTAQADELLVGVELPLTGTLARVGAGMHEGIMVAA 56 Query: 109 DVFNKTNGKHKIKLVTIDDESAPAKAIAAVEKLAGEGVLAITGGYGSNNIAPAADAAGKA 168 DVFNKTN KHKIK++T+D+ESAPAKAIAAVEKLA +GV+AI GGYGSNNIAPA+DAA K Sbjct: 57 DVFNKTNSKHKIKIITVDNESAPAKAIAAVEKLASQGVVAIDGGYGSNNIAPASDAASKL 116 Query: 169 GLVYMTSGGVDDNLVNSGRKNFFRINNVAGYQKAMVGLLDDMNARSVSIVYSTKEATAAL 228 GLVY+TSGGVDD+LVNSGRKNFFRINN AGYQKAMVGLL D+N +SVSI+YSTKEATA L Sbjct: 117 GLVYVTSGGVDDSLVNSGRKNFFRINNSAGYQKAMVGLLGDLNVKSVSILYSTKEATAGL 176 Query: 229 AKDLEKAWGAKGLKVTSHAFDPAISDFKPIVNKIKLQDKPEVIAMIGYENDYVGILRAAR 288 A DL+K+ AKG+ V +HAFDPA++DFKPI+NK+KLQDK EVIAMIGYENDYVGILRAAR Sbjct: 177 ASDLQKSLTAKGVTVVAHAFDPAMTDFKPIINKVKLQDKSEVIAMIGYENDYVGILRAAR 236 Query: 289 VLKPAVKAMVGVWSLATPKMAQDFPDLVPNVYGTALLPYPAQFTTADGKLFEETYRRLYK 348 VLKP VKAMVGVWSLATPKMA DFPDL+PNVYGTA+LP+PA+F TA+GK F +TY+RLYK Sbjct: 237 VLKPNVKAMVGVWSLATPKMAADFPDLMPNVYGTAVLPFPAEFKTAEGKSFNDTYQRLYK 296 Query: 349 KDPDYLGQFGYVQSMLLFEAIARAADKGTLKKDGVAEEMRKTDRETLIGRVQFGANGDNL 408 K+PDYLGQFGYVQSMLLF+AIARAADKGTLKKDGVAEEMRKTD ETLIGRVQF +NGDN+ Sbjct: 297 KEPDYLGQFGYVQSMLLFDAIARAADKGTLKKDGVAEEMRKTDSETLIGRVQFSSNGDNV 356 Query: 409 NFTHHMGQHQGDKVAIVWPKAAATNKMNYPAVPW 442 NF+H MGQHQG K+ IVWPKA AT K N+P VPW Sbjct: 357 NFSHRMGQHQGKKIVIVWPKADATGKANFPGVPW 390 >ref|YP_421964.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magneticum AMB-1] dbj|BAE51405.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magneticum AMB-1] Length = 388 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 235/381 (61%), Positives = 298/381 (78%) Query: 62 LACIASALAAGAGSAAADELKVGVEIPLTGSLARVGSGMQEGINVAADVFNKTNGKHKIK 121 ++ +A +L G G A A E K+G EIPL+G+LARVG+ M EGI VAA++FNK NGKH +K Sbjct: 8 VSALALSLMLGFGPARAAEFKIGAEIPLSGNLARVGTAMNEGIQVAAEMFNKKNGKHTVK 67 Query: 122 LVTIDDESAPAKAIAAVEKLAGEGVLAITGGYGSNNIAPAADAAGKAGLVYMTSGGVDDN 181 ++T+DDES+PAKA+ AVEKLA +GV+A TGGYGSN I PA++AA K G VY+TSGGV Sbjct: 68 ILTVDDESSPAKAVGAVEKLAADGVVAYTGGYGSNIIGPASEAAEKLGKVYITSGGVATE 127 Query: 182 LVNSGRKNFFRINNVAGYQKAMVGLLDDMNARSVSIVYSTKEATAALAKDLEKAWGAKGL 241 L K FFRIN+ GY +A++G+ +++ +SV++VYSTKEAT +AK L+ G KG+ Sbjct: 128 LTKRNLKTFFRINSSEGYARALMGMFNEVGIKSVAVVYSTKEATEEVAKMLQTGLGPKGV 187 Query: 242 KVTSHAFDPAISDFKPIVNKIKLQDKPEVIAMIGYENDYVGILRAARVLKPAVKAMVGVW 301 KVT HAFDPA +DFKPI++KIKLQD+P+ IAMIGYENDYVGILRAA+VLKP +K + GVW Sbjct: 188 KVTMHAFDPATNDFKPIIHKIKLQDRPDAIAMIGYENDYVGILRAAKVLKPDIKTIAGVW 247 Query: 302 SLATPKMAQDFPDLVPNVYGTALLPYPAQFTTADGKLFEETYRRLYKKDPDYLGQFGYVQ 361 SLAT KMA +FPDL+ NV GT+ L +PA+FTT + K F ETY++++ K PDYLG FGYVQ Sbjct: 248 SLATSKMAAEFPDLMENVSGTSTLSFPAEFTTPEAKEFAETYQKMFNKAPDYLGIFGYVQ 307 Query: 362 SMLLFEAIARAADKGTLKKDGVAEEMRKTDRETLIGRVQFGANGDNLNFTHHMGQHQGDK 421 S LLFEA+ARAAD GT+ K G+A EMRKT +T+IG+V+F +GDN FTH MGQHQ K Sbjct: 308 SKLLFEAVARAADAGTMDKGGIATEMRKTQSDTVIGKVRFDESGDNPEFTHRMGQHQAGK 367 Query: 422 VAIVWPKAAATNKMNYPAVPW 442 V +VWP AAT K+ YPAVPW Sbjct: 368 VVLVWPAEAATGKVKYPAVPW 388 >ref|ZP_00052710.1| COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 388 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 233/381 (61%), Positives = 294/381 (77%) Query: 62 LACIASALAAGAGSAAADELKVGVEIPLTGSLARVGSGMQEGINVAADVFNKTNGKHKIK 121 ++ +A +L G A A E K+G EIPL+G+LARVG+ M EGI VAA++FNK +GKH +K Sbjct: 8 VSALALSLMLGFAPAHAAEFKIGAEIPLSGNLARVGTAMNEGIQVAAEMFNKKSGKHSVK 67 Query: 122 LVTIDDESAPAKAIAAVEKLAGEGVLAITGGYGSNNIAPAADAAGKAGLVYMTSGGVDDN 181 ++T+DDES+PAKA+ AVEKLA +GV+A TGGYGSN I PA++AA K G VY+TSGGV Sbjct: 68 IITMDDESSPAKAVGAVEKLAADGVVAYTGGYGSNIIGPASEAAEKLGKVYVTSGGVASE 127 Query: 182 LVNSGRKNFFRINNVAGYQKAMVGLLDDMNARSVSIVYSTKEATAALAKDLEKAWGAKGL 241 L K FFRIN+ GY +A++G+ + +SV++VYSTKEAT +AK L+ G +G+ Sbjct: 128 LTKRNLKTFFRINSSEGYARALMGMFNKQGVKSVAVVYSTKEATEEVAKMLQSGLGPQGV 187 Query: 242 KVTSHAFDPAISDFKPIVNKIKLQDKPEVIAMIGYENDYVGILRAARVLKPAVKAMVGVW 301 KVT HAFDPA +DFKPI++KIKLQD+P+ IAMIGYENDYVGILRAA+VLKP +K + GVW Sbjct: 188 KVTMHAFDPATNDFKPIIHKIKLQDRPDAIAMIGYENDYVGILRAAKVLKPDIKTIAGVW 247 Query: 302 SLATPKMAQDFPDLVPNVYGTALLPYPAQFTTADGKLFEETYRRLYKKDPDYLGQFGYVQ 361 SLAT KMA +FPDL+ NV GT+ L YPA+FTT + K F ETY++++ K PDYLG FGYVQ Sbjct: 248 SLATAKMAAEFPDLMENVSGTSTLSYPAEFTTPEAKEFAETYQKMFNKAPDYLGIFGYVQ 307 Query: 362 SMLLFEAIARAADKGTLKKDGVAEEMRKTDRETLIGRVQFGANGDNLNFTHHMGQHQGDK 421 S LLFEA+ARAAD GT+ K G+A EMRKT +T+IG+V+F +GDN FTH MGQHQ K Sbjct: 308 SKLLFEAVARAADTGTVDKGGIATEMRKTLSDTVIGKVRFDESGDNPEFTHRMGQHQAGK 367 Query: 422 VAIVWPKAAATNKMNYPAVPW 442 V +VWP AAT M YPAVPW Sbjct: 368 VVLVWPSDAATGTMKYPAVPW 388 >ref|YP_001525788.1| branched-chain amino acid ABC transporter periplasmic protein [Azorhizobium caulinodans ORS 571] dbj|BAF88870.1| ABC-type branched-chain amino acid transport periplasmic component [Azorhizobium caulinodans ORS 571] Length = 390 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 215/389 (55%), Positives = 274/389 (70%), Gaps = 2/389 (0%) Query: 56 IRRLALLACIASALAAGAGSAAADE--LKVGVEIPLTGSLARVGSGMQEGINVAADVFNK 113 +R + A +A AL G A A E + +G +PLTGSLAR G EG+ VA + N Sbjct: 2 VRSAIVSATLALALGVGVPVAQAQEKVVTIGAHMPLTGSLARSGQAFNEGMQVAIRMCNA 61 Query: 114 TNGKHKIKLVTIDDESAPAKAIAAVEKLAGEGVLAITGGYGSNNIAPAADAAGKAGLVYM 173 + K + K+ IDDES PAKA++AVEKL+ G +AI GGYGSN + PA+DAA K G VY+ Sbjct: 62 NSPKVQFKVDVIDDESTPAKAVSAVEKLSASGSVAIIGGYGSNIVGPASDAADKLGKVYI 121 Query: 174 TSGGVDDNLVNSGRKNFFRINNVAGYQKAMVGLLDDMNARSVSIVYSTKEATAALAKDLE 233 T+G V D L G K FFRINN AGYQ+ + LL D+ ++VSI+ STKEA A LA+ LE Sbjct: 122 TAGAVSDELTQRGLKTFFRINNNAGYQRGIANLLIDLKPQAVSIIASTKEAPALLAEGLE 181 Query: 234 KAWGAKGLKVTSHAFDPAISDFKPIVNKIKLQDKPEVIAMIGYENDYVGILRAARVLKPA 293 K AKG+KVT H FDPAI+DFKPI+NKIKLQDK ++I M YENDYVGI+RAA+VLKP Sbjct: 182 KDLAAKGIKVTVHKFDPAITDFKPIINKIKLQDKSDIIMMSAYENDYVGIIRAAKVLKPQ 241 Query: 294 VKAMVGVWSLATPKMAQDFPDLVPNVYGTALLPYPAQFTTADGKLFEETYRRLYKKDPDY 353 VK +VG WSLATPKM +FPDL+ NV GT+ LPYP + + +G+ F TY+ ++ KD +Y Sbjct: 242 VKLIVGAWSLATPKMYTEFPDLMNNVVGTSFLPYPVEVKSPEGQKFAATYKEMFNKDIEY 301 Query: 354 LGQFGYVQSMLLFEAIARAADKGTLKKDGVAEEMRKTDRETLIGRVQFGANGDNLNFTHH 413 L +V++ LL EAI RAA GTL K G+ +EMRKTDRETL+GR+QF GDN NF Sbjct: 302 LASLSFVETTLLCEAIQRAATAGTLDKGGLVDEMRKTDRETLLGRLQFDQTGDNPNFALS 361 Query: 414 MGQHQGDKVAIVWPKAAATNKMNYPAVPW 442 MGQH+ K+ +V PK+AAT ++ YPA+PW Sbjct: 362 MGQHRDGKIVLVSPKSAATAEIAYPALPW 390 >ref|YP_003808019.1| extracellular ligand-binding receptor [Desulfarculus baarsii DSM 2075] gb|ADK85425.1| Extracellular ligand-binding receptor [Desulfarculus baarsii DSM 2075] Length = 406 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 116/418 (27%), Positives = 184/418 (44%), Gaps = 54/418 (12%) Query: 59 LALLACIASALAAGAGSAAADELKVGVEIPLTGSLARVGSGMQEGINVAADVFNKTNG-- 116 +ALLA A + A A A ++G +PL+G + G+ +++ A+ N G Sbjct: 6 IALLALCAMTITAQAEPVAG--YRIGAVLPLSGLFGKDGAQIKDAYTFWAEHVNAQGGVL 63 Query: 117 ----KHKIKLVTIDDESAPAKAIAAVEKLA-GEGVLAITGGYGSNNIAPAADAAGKAGLV 171 +H ++LV DD S P ++ V KLA + V + GGYGS+ + AA AAG+A Sbjct: 64 AGGRRHPVELVIYDDASTPQRSQLLVRKLATADRVDLLLGGYGSS-LVMAASAAGEALGY 122 Query: 172 YMTSGGVD-DNLVNSGRKNFFRI-----NNVAGYQKAMVGLLDDMNARSVSIVYSTKEAT 225 M SGG +NL G K +F + V+G +AM GL R+ +I+ S T Sbjct: 123 PMISGGASSNNLFERGYKYYFSTLGRATDEVSGVVRAMAGL--SPKPRTCAIIGSDIPFT 180 Query: 226 AALAKDLEKAWGAKGLKVTSHAFDP-AISDFKPIVNKIKLQDKPEVIAMIGYENDYVGIL 284 A + GL+V + P A+ D+ ++ K K +V+ + + + ++ Sbjct: 181 ALACQGYRDQASTAGLEVVHYELFPLAMQDYNTVLAKAK-ASGADVLLVGSHLQVALRVM 239 Query: 285 RAARVLKPAVKAMVGVWSLATPKMAQDFPDLVPNVYG----TALLPY-------PAQFTT 333 RA + + + KA+ + P Q+ V+ T LPY AQF T Sbjct: 240 RAMKEINYSPKAVAFSYGPTVPAFVQELGPDAEGVFAASEWTPNLPYDGPVFGSAAQFAT 299 Query: 334 ADGKLFEETYRRLYKKDPDYLG---------QFGYVQSMLLFEAIARAADKGTLKKDGVA 384 A YR+ + ++PDY+ Q VQ + L I A + + Sbjct: 300 A--------YRQRFGREPDYVEAAAVAGAVAQQLAVQELGLTPPIDAAGRRA------IM 345 Query: 385 EEMRKTDRETLIGRVQFGANGDNLNFTHHMGQHQGDKVAIVWPKAAATNKMNYPAVPW 442 E + D T GR++F A+G N+ Q Q K+A V+P++A T YP PW Sbjct: 346 ERLHAMDVMTFYGRIKFDADGANVAHPPVCVQVQDGKLACVYPQSARTAPPRYPMKPW 403