BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3016.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_523835.1| inner-membrane translocator [Rhodoferax ferrire... 403 e-110 ref|YP_421965.1| branched chain amino acid ABC transporter [Magn... 302 4e-80 ref|ZP_00052709.2| COG0559: Branched-chain amino acid ABC-type t... 293 3e-77 ref|YP_001525787.1| branched-chain amino acid ABC transporter pe... 287 1e-75 ref|NP_882751.1| putative branched-chain amino acid transport pe... 147 1e-33 >ref|YP_523835.1| inner-membrane translocator [Rhodoferax ferrireducens T118] gb|ABD70304.1| inner-membrane translocator [Rhodoferax ferrireducens T118] Length = 290 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 252/290 (86%), Positives = 271/290 (93%) Query: 1 MNELILQALYSGLLQGGSYALIALGLALVFGAMRVINLAQGELVLLAAYIAYSVESGLGL 60 M ELILQALYSG+LQGGSYALIALGLALVFGAM+VINLA GELVLL+AY+AYSVESGLG Sbjct: 1 MTELILQALYSGVLQGGSYALIALGLALVFGAMKVINLAHGELVLLSAYVAYSVESGLGW 60 Query: 61 NPVLAIPIALVVVCLTSAIVYFVVSRIKKDREINSLILTYGIGVILTNGMLLIWKADIRS 120 NP+ AIPIALVVVCL S +VYFVV RIKKDREINSLILTYGIGVILTN +LLIWKAD+RS Sbjct: 61 NPIFAIPIALVVVCLASVMVYFVVGRIKKDREINSLILTYGIGVILTNLILLIWKADVRS 120 Query: 121 TSSEWLQEAFVLGPFYSMRSEVLFFGVSLLMMAALWWWLSRSWYGRAVRAVSSNRDAAKL 180 T S WLQEA V+GPFYSMRSEVLFF VSL+MM LWWWLSRSWYGRAVRAVSSNRDAAKL Sbjct: 121 TGSTWLQEAIVIGPFYSMRSEVLFFIVSLVMMGGLWWWLSRSWYGRAVRAVSSNRDAAKL 180 Query: 181 MGINPGYTELVSFIVAGILASFAGVALFSYGVISPAYGGVLTVKAFIITVLAGVGSIPGV 240 MGI+PGYTELVSF+VAGILA+ AGVALFSYGV+SPAYG VLTVKAFIITVLAG+GSIPGV Sbjct: 181 MGIDPGYTELVSFVVAGILAAVAGVALFSYGVVSPAYGSVLTVKAFIITVLAGIGSIPGV 240 Query: 241 LIGAILLGVAEALTVTLASSALQELAGMGLFLLVLFIMPNGLFGVRARRG 290 LIGA+LLGVAEALTVTLASSALQEL GMGLFLLVLF+MP+GLFG + RRG Sbjct: 241 LIGAVLLGVAEALTVTLASSALQELVGMGLFLLVLFVMPSGLFGAKGRRG 290 >ref|YP_421965.1| branched chain amino acid ABC transporter [Magnetospirillum magneticum AMB-1] dbj|BAE51406.1| Branched-chain amino acid ABC-type transport system [Magnetospirillum magneticum AMB-1] Length = 291 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 185/291 (63%), Positives = 240/291 (82%), Gaps = 1/291 (0%) Query: 1 MNELILQALYSGLLQGGSYALIALGLALVFGAMRVINLAQGELVLLAAYIAYSVESGLGL 60 M EL LQ+L+SG+L G YALIALGLALVFG MRVINLA GELVLL AYI+Y+ E LGL Sbjct: 1 MLELTLQSLFSGVLSGAYYALIALGLALVFGTMRVINLAHGELVLLGAYISYTAEEKLGL 60 Query: 61 NPVLAIPIALVVVCLTSAIVYFVVSRIKKDREINSLILTYGIGVILTNGMLLIWKADIRS 120 +P+ ++P+AL VV T+ +VY++VS IKKDRE+NSLILT+GIGVILTN +L+IW ADI S Sbjct: 61 DPLASLPLALAVVVGTAILVYYLVSLIKKDRELNSLILTFGIGVILTNAVLMIWSADIHS 120 Query: 121 TSSEWLQEAFVL-GPFYSMRSEVLFFGVSLLMMAALWWWLSRSWYGRAVRAVSSNRDAAK 179 ++ W +A +L ++M++E++F G + ++ A+WWWL +SWYGRA+RAV+SNRDAAK Sbjct: 121 ATTPWYHDATILFDTLFAMQAELVFAGFGIALVGAVWWWLEKSWYGRALRAVASNRDAAK 180 Query: 180 LMGINPGYTELVSFIVAGILASFAGVALFSYGVISPAYGGVLTVKAFIITVLAGVGSIPG 239 LMG+NP TE++SF V+G+LA+ AG+A+++ VI PA G LTVKAFIITVLAG+GS+PG Sbjct: 181 LMGVNPQLTEILSFAVSGVLATVAGIAIYTAKVIQPAMGHHLTVKAFIITVLAGMGSVPG 240 Query: 240 VLIGAILLGVAEALTVTLASSALQELAGMGLFLLVLFIMPNGLFGVRARRG 290 VL+GA+LLG+ E+LTVT+ASSALQELAGM LFL+VL +MP+GLFG RRG Sbjct: 241 VLLGAVLLGIVESLTVTMASSALQELAGMVLFLVVLLLMPSGLFGRAKRRG 291 >ref|ZP_00052709.2| COG0559: Branched-chain amino acid ABC-type transport system, permease components [Magnetospirillum magnetotacticum MS-1] Length = 279 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 181/279 (64%), Positives = 232/279 (83%), Gaps = 1/279 (0%) Query: 13 LLQGGSYALIALGLALVFGAMRVINLAQGELVLLAAYIAYSVESGLGLNPVLAIPIALVV 72 +L G YALIALGLALVFG MRVINLA GELVLL AYI+Y+ E LGL+P+ ++P+AL V Sbjct: 1 MLSGAYYALIALGLALVFGTMRVINLAHGELVLLGAYISYTAEEKLGLDPLASLPLALAV 60 Query: 73 VCLTSAIVYFVVSRIKKDREINSLILTYGIGVILTNGMLLIWKADIRSTSSEWLQEAFVL 132 V T+ +VY++VS IK DRE+NSLILT+GIGVILTNG+L+IW ADI S ++ W +A +L Sbjct: 61 VVGTAILVYYLVSLIKTDRELNSLILTFGIGVILTNGVLMIWSADIHSATTPWYHDATIL 120 Query: 133 -GPFYSMRSEVLFFGVSLLMMAALWWWLSRSWYGRAVRAVSSNRDAAKLMGINPGYTELV 191 ++M++E++F G+ +L++ A+WWWL +SWYGRA+RAV+SNRDAAKLMG+NP TE++ Sbjct: 121 FETLFAMQAELVFAGIGILLVGAVWWWLEKSWYGRALRAVASNRDAAKLMGVNPQLTEIL 180 Query: 192 SFIVAGILASFAGVALFSYGVISPAYGGVLTVKAFIITVLAGVGSIPGVLIGAILLGVAE 251 SF V+G+LA+ AGVA+++ VI PA G LTVKAFIITVLAG+GS+PGVL+GA+LLGV E Sbjct: 181 SFAVSGLLATVAGVAIYTAKVIQPAMGHHLTVKAFIITVLAGMGSVPGVLLGAVLLGVVE 240 Query: 252 ALTVTLASSALQELAGMGLFLLVLFIMPNGLFGVRARRG 290 +LTVTLASSALQELAGM LFL+VL +MP+GLFG RRG Sbjct: 241 SLTVTLASSALQELAGMVLFLVVLLLMPSGLFGRAKRRG 279 >ref|YP_001525787.1| branched-chain amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88869.1| ABC-type branched-chain amino acid transport permease component [Azorhizobium caulinodans ORS 571] Length = 290 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 196/290 (67%), Positives = 238/290 (82%) Query: 1 MNELILQALYSGLLQGGSYALIALGLALVFGAMRVINLAQGELVLLAAYIAYSVESGLGL 60 M ELILQAL+SG+L G YAL+ALGLAL FGAMR+INLA GELVLLAAY+AY VE LGL Sbjct: 1 MTELILQALFSGVLIGSVYALVALGLALAFGAMRIINLAHGELVLLAAYMAYVVEQRLGL 60 Query: 61 NPVLAIPIALVVVCLTSAIVYFVVSRIKKDREINSLILTYGIGVILTNGMLLIWKADIRS 120 P +AIP+ALVVV S +++ +V+ IK RE+NSLILT+ +G+ILTN +LL++ +D+R+ Sbjct: 61 EPYMAIPLALVVVSAVSIVLFMLVNMIKDHRELNSLILTFAVGIILTNAILLVFASDMRT 120 Query: 121 TSSEWLQEAFVLGPFYSMRSEVLFFGVSLLMMAALWWWLSRSWYGRAVRAVSSNRDAAKL 180 T+S +LQ+A G ++M+ E++ FG+S+++M LWWWL SWYGRAVRAVSSNR AAKL Sbjct: 121 TTSVFLQDAISFGDVFAMKGELVAFGLSIVLMGFLWWWLKASWYGRAVRAVSSNRGAAKL 180 Query: 181 MGINPGYTELVSFIVAGILASFAGVALFSYGVISPAYGGVLTVKAFIITVLAGVGSIPGV 240 MGINP E V+F+VAG LAS AGVAL++ V+ PA G LTVKAFIITVLAGVGSIPGV Sbjct: 181 MGINPTRIETVAFLVAGALASVAGVALYTMSVVQPAVGHALTVKAFIITVLAGVGSIPGV 240 Query: 241 LIGAILLGVAEALTVTLASSALQELAGMGLFLLVLFIMPNGLFGVRARRG 290 L+GA+LLGV EALTVT ASSALQELAGM LFLLVLF+MPNGLFG ARRG Sbjct: 241 LLGAVLLGVTEALTVTFASSALQELAGMVLFLLVLFLMPNGLFGASARRG 290 >ref|NP_882751.1| putative branched-chain amino acid transport permease [Bordetella parapertussis 12822] ref|NP_886950.1| branched-chain amino acid transport permease [Bordetella bronchiseptica RB50] emb|CAE35983.1| putative branched-chain amino acid transport permease [Bordetella parapertussis] emb|CAE30899.1| putative branched-chain amino acid transport permease [Bordetella bronchiseptica RB50] Length = 293 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 110/293 (37%), Positives = 173/293 (59%), Gaps = 4/293 (1%) Query: 1 MNELILQALYSGLLQGGSYALIALGLALVFGAMRVINLAQGELVLLAAYIAYSVESGLGL 60 M+ LI+Q L +GL+ G Y LI +GL ++FG +RV+N A GE ++L AY AY + G+ Sbjct: 1 MSGLIIQGLVNGLILGAIYGLIGVGLNVIFGVLRVVNFAHGEFLVLGAYFAYYLLEYAGI 60 Query: 61 NPVLAIPIALVVVCLTSAIVYFV-VSRIKK--DREINSLILTYGIGVILTNGMLLIWKAD 117 P+LA+P+A L ++YFV + R+ K D EI+SL+L +G+ ++L MLL ++AD Sbjct: 61 GPLLALPLAFGAFFLAGYVLYFVLIPRLSKADDPEISSLLLMFGVSIMLGAIMLLAFEAD 120 Query: 118 IRSTSSEWLQEAFVLGPFYSMRSEVLFFGVSLLMMAALWWWLSRSWYGRAVRAVSSNRDA 177 RS E F +GP ++ ++L ++A L W+L R+ G+A+RA+ NRDA Sbjct: 121 ARSLPYEIEPVFFKIGPVLIPTVRLIALAIALAVVAVLAWFLYRTQMGKALRAIIMNRDA 180 Query: 178 AKLMGINPGYTELVSFIVAGILASFAGVAL-FSYGVISPAYGGVLTVKAFIITVLAGVGS 236 +++GIN V+F + LA+ GV + + SP G T+ FI+ VL G+G Sbjct: 181 VRIVGINAERLSAVAFGLGIGLAAVTGVLVAMVFPAFSPFMGNDYTLIGFIVIVLGGLGH 240 Query: 237 IPGVLIGAILLGVAEALTVTLASSALQELAGMGLFLLVLFIMPNGLFGVRARR 289 G L+GA+L GV E ++V + ++ + G L + ++F+ P GLFG RA R Sbjct: 241 PVGALVGAMLFGVTEQVSVVFFNPSIATICGFVLMVAMIFVRPTGLFGHRALR 293