BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3015.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_523834.1| inner-membrane translocator [Rhodoferax ferrire... 425 e-117 ref|YP_421966.1| ABC-type branched-chain amino acid transport sy... 328 6e-88 ref|YP_001525786.1| branched-chain amino acid ABC transporter pe... 293 3e-77 ref|ZP_00053573.2| COG4177: ABC-type branched-chain amino acid t... 203 3e-50 ref|YP_004369928.1| ABC transporter integral membrane subunit [D... 155 1e-35 >ref|YP_523834.1| inner-membrane translocator [Rhodoferax ferrireducens T118] gb|ABD70303.1| inner-membrane translocator [Rhodoferax ferrireducens T118] Length = 317 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 253/312 (81%), Positives = 278/312 (89%) Query: 3 MNKNKLPALLLPLLLIGAPLLLAQDHYVMSLLVASMVIGGIALSWALLGNLGGMISFGHA 62 M NK+ +L + I PL D+YVMSL+VASMVIGGIALSWALLGNLGGM+SFGHA Sbjct: 1 MKLNKMIIAMLLAVYIAVPLAFGSDNYVMSLVVASMVIGGIALSWALLGNLGGMVSFGHA 60 Query: 63 AFFGVGAYTSAVLSMKFGVPVLLGLLLGGVGALVAALAMLPVLRLRGPYFALAILAYAHI 122 AFFGVGAY SA+LSMKFGVPVL+ +LLGGVGA++A+LAMLPVLRLRGPYFALAILAYAHI Sbjct: 61 AFFGVGAYASAILSMKFGVPVLISILLGGVGAVIASLAMLPVLRLRGPYFALAILAYAHI 120 Query: 123 FRILATEWTSMTGGSGGLSNIARLPTVMGVDLSSKIGAYFVILLIVAVFALVYARVRESH 182 FRILAT+WTS+TGGSGGLSNI RLP + G D SSK G Y VIL IV FA VY +R SH Sbjct: 121 FRILATQWTSVTGGSGGLSNIPRLPEIFGYDFSSKTGGYLVILTIVLAFAAVYQYIRGSH 180 Query: 183 YGLALRAMHESEDATRVVGVNSTVLKGMMLLLSAFMCGVVGAFNAHYISFLEPDYAFSAL 242 YGLALRAMHESEDATRVVGVNST+LKG+MLL+SAFMCGVVGAFNAHYI+FLEPDYAFS L Sbjct: 181 YGLALRAMHESEDATRVVGVNSTLLKGLMLLVSAFMCGVVGAFNAHYINFLEPDYAFSGL 240 Query: 243 WVTIPIVAAIFGGYRSITGPVVGAVVVYLLDQLVFKNIIPSGHQLVLGALLVAMIVFSPD 302 WVTIPIVAAIFGGYR+ITGP+VGAVVVYL+DQL+FKNIIPSGHQLVLG LLVAMIVFSPD Sbjct: 241 WVTIPIVAAIFGGYRTITGPIVGAVVVYLIDQLIFKNIIPSGHQLVLGVLLVAMIVFSPD 300 Query: 303 GLLPLLRKLGKR 314 GLLPLLRKL +R Sbjct: 301 GLLPLLRKLTRR 312 >ref|YP_421966.1| ABC-type branched-chain amino acid transport system [Magnetospirillum magneticum AMB-1] dbj|BAE51407.1| ABC-type branched-chain amino acid transport system [Magnetospirillum magneticum AMB-1] Length = 320 Score = 328 bits (842), Expect = 6e-88, Method: Composition-based stats. Identities = 199/314 (63%), Positives = 246/314 (78%), Gaps = 1/314 (0%) Query: 10 ALLLPLLLIGAPLLLAQDHYVMSLLVASMVIGGIALSWALLGNLGGMISFGHAAFFGVGA 69 A L I PL L + YV+ LLVA++ IGGIA++WALLGNLGGM+SFGHAAFFGVGA Sbjct: 8 AAFLAFSYIAVPLALGSNAYVIGLLVAALTIGGIAVAWALLGNLGGMVSFGHAAFFGVGA 67 Query: 70 YTSAVLSMKFGVPVLLGLLLGGVGALVAALAMLPVLRLRGPYFALAILAYAHIFRILATE 129 Y SA+L+++ G PV +L+ G+GA +A++A +P LRLRGPYFALAILAYA IFRILATE Sbjct: 68 YVSALLTLRGGWPVFPAMLVAGLGAAIASVATMPALRLRGPYFALAILAYAEIFRILATE 127 Query: 130 WTSMTGGSGGLSNIARLPTVMGVDLSSKIGAYFVILLIVAVFALVYARVRESHYGLALRA 189 +TGG+ GL +I RLP V+G+D +K+G YFVIL IV Y +R S YGLAL+A Sbjct: 128 LKPITGGAAGLLSIPRLPNVLGLDFGTKLGGYFVILTIVVAAMAAYHLIRRSPYGLALKA 187 Query: 190 MHESEDATRVVGVNSTVLKGMMLLLSAFMCGVVGAFNAHYISFLEPDYAFSALWVTIPIV 249 MH+SEDATRVVGVNST+LK ML++SAF+ G+VGAFNAHYI+FLEPDYAF+ W T+ IV Sbjct: 188 MHDSEDATRVVGVNSTLLKAWMLVVSAFITGMVGAFNAHYINFLEPDYAFAGQWTTLAIV 247 Query: 250 AAIFGGYRSITGPVVGAVVVYLLDQLVFKNIIPSGHQLVLGALLVAMIVFSPDGLLPLLR 309 +AIFGGYR+++GP+VGAVVVYL+DQL FK I+P GHQ+VLG LL AMI+FSP GL+P+L Sbjct: 248 SAIFGGYRTVSGPLVGAVVVYLVDQLAFKPILPQGHQIVLGVLLGAMILFSPGGLMPMLM 307 Query: 310 KLGKRKSAGGKHAA 323 RK G HAA Sbjct: 308 AKLSRKE-GHAHAA 320 >ref|YP_001525786.1| branched-chain amino acid ABC transporter permease [Azorhizobium caulinodans ORS 571] dbj|BAF88868.1| ABC-type branched-chain amino acid transport permease component [Azorhizobium caulinodans ORS 571] Length = 329 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 176/303 (58%), Positives = 236/303 (77%), Gaps = 2/303 (0%) Query: 21 PLLLAQDHYVMSLLVASMVIGGIALSWALLGNLGGMISFGHAAFFGVGAYTSAVLSMKFG 80 PL Y++ LL++++++ G+ALSWALLGNLGGM+SFGHAAFFGVG+Y SA+L+ + G Sbjct: 27 PLAAGASPYMLGLLISALILAGLALSWALLGNLGGMVSFGHAAFFGVGSYASALLAARLG 86 Query: 81 VPVLLGLLLGGVGALVAALAMLPVLRLRGPYFALAILAYAHIFRILATEWTSMTGGSGGL 140 VPVLL + L G+ A +++LAMLP LRL GPYFALAILAYA IFRILATE T +TGG+ GL Sbjct: 87 VPVLLAIPLAGLIATISSLAMLPALRLSGPYFALAILAYAQIFRILATEATWLTGGAAGL 146 Query: 141 SNIARLPTVMGVDLSSKIGAYFVILLIVAVFALVYARVRESHYGLALRAMHESEDATRVV 200 LPT+ G +L+ + G+Y ++L +V + A++Y +R SH G+ALRA+ ESEDATRVV Sbjct: 147 QRYPGLPTLFGFNLAERHGSYVLVLAMVVICAIIYVAIRRSHVGIALRAIAESEDATRVV 206 Query: 201 GVNSTVLKGMMLLLSAFMCGVVGAFNAHYISFLEPDYAFSALWVTIPIVAAIFGGYRSIT 260 GVNST+LK ML+LSAF+ G+ GA NAH I FLEPDYAFS +W +PI+AA+FGGYR++ Sbjct: 207 GVNSTLLKTWMLMLSAFIAGMFGALNAHIIGFLEPDYAFSGIWSVMPIIAAVFGGYRTVL 266 Query: 261 GPVVGAVVVYLLDQLVFKNIIPSGHQLVLGALLVAMIVFSPDGLLPLLRKLGKRKSAGGK 320 GPV+GA+V+Y+ DQ+V K++IP GHQ++LG LL M++ +P+GL LL + R +GGK Sbjct: 267 GPVLGAIVIYMFDQVVAKSLIPVGHQILLGILLAIMVLVAPNGLAGLLSRFFSR--SGGK 324 Query: 321 HAA 323 H A Sbjct: 325 HHA 327 >ref|ZP_00053573.2| COG4177: ABC-type branched-chain amino acid transport system, permease component [Magnetospirillum magnetotacticum MS-1] Length = 180 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 122/182 (67%), Positives = 147/182 (80%), Gaps = 4/182 (2%) Query: 142 NIARLPTVMGVDLSSKIGAYFVILLIVAVFALVYARVRESHYGLALRAMHESEDATRVVG 201 +I RLP V+G+D SK+G YFVIL IVA VY +R S YGLAL+AMH+SEDATRVVG Sbjct: 3 SIPRLPIVLGLDFGSKLGGYFVILTIVAASMAVYHLIRSSTYGLALKAMHDSEDATRVVG 62 Query: 202 VNSTVLKGMMLLLSAFMCGVVGAFNAHYISFLEPDYAFSALWVTIPIVAAIFGGYRSITG 261 VNST+LK ML +SAF+ GVVGAFNAHYI+FLEPDYAF+ W T+ IV+AIFGGYR++TG Sbjct: 63 VNSTLLKAWMLAVSAFITGVVGAFNAHYINFLEPDYAFAGQWTTLAIVSAIFGGYRTVTG 122 Query: 262 PVVGAVVVYLLDQLVFKNIIPSGHQLVLGALLVAMIVFSPDGLLPLLRKLGKRKSAGGKH 321 P++GA+VVYL+DQL FK I+P GHQ+VLG LL AMI+FSP GL+PLL L K+K G H Sbjct: 123 PLLGALVVYLVDQLAFKPILPQGHQIVLGVLLGAMILFSPGGLMPLL--LAKKK--GPAH 178 Query: 322 AA 323 AA Sbjct: 179 AA 180 >ref|YP_004369928.1| ABC transporter integral membrane subunit [Desulfobacca acetoxidans DSM 11109] gb|AEB08747.1| ABC-type transporter, integral membrane subunit [Desulfobacca acetoxidans DSM 11109] Length = 339 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 7/305 (2%) Query: 15 LLLIGAPLLLAQDHYVMSLLVASMVIGGIALSWALLGNLGGMISFGHAAFFGVGAYTSAV 74 +L G PL L + + + +AL+W + L G++S GHAAFFG+GAY + + Sbjct: 34 MLFFGGPLFLPGADLYLLVFGLACFYATLALAWNIFA-LSGLLSLGHAAFFGLGAYGAVL 92 Query: 75 LSMKFGVPVLLGLLLGG-VGALVAALAMLPVLRLRGPYFALAILAYAHIFRILATEWTSM 133 L P ++ GG +G + L L RLRG YFALA LA I R++ W ++ Sbjct: 93 LENWGHWPTYPAIMAGGALGMVYGCLWSLAFQRLRGAYFALASLAAMEIPRVVIDNWETL 152 Query: 134 TGGSGGLSNIARLPTVMGVDLSSKIG-----AYFVILLIVAVFALVYARVRESHYGLALR 188 T GS G+ I+RLP++ L +G Y + ++A L++ R S +G LR Sbjct: 153 TSGSLGIVGISRLPSLSIGSLVIPVGDNLQSQYCFLFFLMAAVGLLHWRAMRSKWGWGLR 212 Query: 189 AMHESEDATRVVGVNSTVLKGMMLLLSAFMCGVVGAFNAHYISFLEPDYAFSALWVTIPI 248 A+ E+A V+GVN + + L LS+++ GV G AH + +EP F+ P+ Sbjct: 213 AIRGDEEAAEVLGVNVFGYRCLTLCLSSYITGVCGGVYAHLVGLIEPAMVFNLQLAAFPL 272 Query: 249 VAAIFGGYRSITGPVVGAVVVYLLDQLVFKNIIPSGHQLVLGALLVAMIVFSPDGLLPLL 308 V ++FGG ++ GP++GA+ +Y LDQLV + +P GH + G +++ I F P GL Sbjct: 273 VLSLFGGRYAVLGPIIGALTLYPLDQLVLQPWLPQGHAAIYGLVIILTIFFFPRGLASWF 332 Query: 309 RKLGK 313 +L K Sbjct: 333 SRLPK 337