BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3011.p (403 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774568.1| major facilitator superfamily transporter pr... 661 0.0 ref|ZP_04585757.1| major facilitator transporter [Pseudomonas sy... 566 e-159 ref|ZP_07005010.1| Major facilitator family transporter [Pseudom... 566 e-159 ref|YP_235792.1| major facilitator transporter [Pseudomonas syri... 562 e-158 ref|ZP_06477612.1| tartrate transporter, putative [Pseudomonas s... 561 e-158 >ref|YP_003774568.1| major facilitator superfamily transporter protein [Herbaspirillum seropedicae SmR1] gb|ADJ62660.1| major facilitator superfamily transporter protein [Herbaspirillum seropedicae SmR1] Length = 449 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 378/403 (93%), Positives = 390/403 (96%) Query: 1 MFIVNYIDRVNIGFVRSHLATDVGISTAAYGLGAGLFFVGYAIFEVPSNLLLQRFGAKAW 60 MFIVNYIDRVNIGFVRSHLATDVGI TAAYGLGAGLFFVGYA+FEVPSNLLLQRFGAKAW Sbjct: 44 MFIVNYIDRVNIGFVRSHLATDVGIGTAAYGLGAGLFFVGYALFEVPSNLLLQRFGAKAW 103 Query: 61 LTRIMATWGLAATAMAFVNSETTFYLLRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA 120 LTRIMATWGLAATAMAFVNSETTFY+LRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA Sbjct: 104 LTRIMATWGLAATAMAFVNSETTFYVLRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA 163 Query: 121 IFLSGSALASILSGPISGGLLQLEGAGLHGWQWMFIIEGMASVVLCGFVWFWLDSMPADA 180 IFLSGSALASILSGPISGGLLQ++G GL GWQWMFIIEGMASV+LCGFVWFWLDSMPADA Sbjct: 164 IFLSGSALASILSGPISGGLLQIDGGGLQGWQWMFIIEGMASVLLCGFVWFWLDSMPADA 223 Query: 181 RWLSAEERTAITGTIVAEQAERMKHKPAHVSPLQLLRDPQILIFCFIYFSISLTIYGATF 240 +WL+A+ER+AIT IV EQAERMKH+PA VSP QLLRDPQILIFCFIYFSISLTIYGATF Sbjct: 224 KWLTAQERSAITRAIVDEQAERMKHQPAQVSPRQLLRDPQILIFCFIYFSISLTIYGATF 283 Query: 241 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARFRHQQAWAATALVIAAIGM 300 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARF+HQQAWAATALVIAA GM Sbjct: 284 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARFKHQQAWAATALVIAAAGM 343 Query: 301 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQGYLDARIAAGVIALINSIGNLGGFVA 360 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQ YLDARIAAGVIALINSIGNLGGFVA Sbjct: 344 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQAYLDARIAAGVIALINSIGNLGGFVA 403 Query: 361 PTTFGYLEQRTGSIQGGLMGLAITSLVAAGVVFLARSGPGTQR 403 PT FG+LEQRTGSIQGGLMGLAITSLVAAGVVFLARSGPG R Sbjct: 404 PTAFGFLEQRTGSIQGGLMGLAITSLVAAGVVFLARSGPGATR 446 >ref|ZP_04585757.1| major facilitator transporter [Pseudomonas syringae pv. oryzae str. 1_6] gb|EGI00203.1| major facilitator transporter [Pseudomonas syringae pv. oryzae str. 1_6] Length = 472 Score = 566 bits (1459), Expect = e-159, Method: Composition-based stats. Identities = 306/403 (75%), Positives = 348/403 (86%) Query: 1 MFIVNYIDRVNIGFVRSHLATDVGISTAAYGLGAGLFFVGYAIFEVPSNLLLQRFGAKAW 60 MFIVNYIDRVNIGFVRSHL TD+GI AAYGLGAGLFFVGYA+FEVPSNLLLQR+GA+AW Sbjct: 46 MFIVNYIDRVNIGFVRSHLETDLGIGAAAYGLGAGLFFVGYALFEVPSNLLLQRYGARAW 105 Query: 61 LTRIMATWGLAATAMAFVNSETTFYLLRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA 120 LTRIM TWG AA AMAFV ET+FY+LRF+LGAAEAGFFPG+IYYFTQWLP+S+RG+AMA Sbjct: 106 LTRIMFTWGAAAMAMAFVQGETSFYVLRFILGAAEAGFFPGIIYYFTQWLPSSDRGKAMA 165 Query: 121 IFLSGSALASILSGPISGGLLQLEGAGLHGWQWMFIIEGMASVVLCGFVWFWLDSMPADA 180 +FLSGSA+AS++SGP+SG LL +EG LHGWQWMF+IEG AS+ LCGFVWFWL S P A Sbjct: 166 LFLSGSAIASVISGPVSGALLSVEGLNLHGWQWMFLIEGFASIALCGFVWFWLQSHPHQA 225 Query: 181 RWLSAEERTAITGTIVAEQAERMKHKPAHVSPLQLLRDPQILIFCFIYFSISLTIYGATF 240 WLSAEE+TA+ I EQ R + S +LL D QIL+FCFIYFS++LTIYGATF Sbjct: 226 TWLSAEEKTALVNAIAEEQRLREAAQTVKPSVFRLLADRQILLFCFIYFSVALTIYGATF 285 Query: 241 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARFRHQQAWAATALVIAAIGM 300 WLPS+IRKMGSFSDF+VGLFNS+PW+ISIVAMY FAALAARF+HQQAW A LVIA++GM Sbjct: 286 WLPSMIRKMGSFSDFEVGLFNSVPWIISIVAMYGFAALAARFKHQQAWVAVTLVIASVGM 345 Query: 301 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQGYLDARIAAGVIALINSIGNLGGFVA 360 F ST G V+AFV+ICFAA+GFKAAS+LFWP+PQGYLDARIAA VIALINSIGNLGGFVA Sbjct: 346 FMSTIGGPVFAFVAICFAAIGFKAASALFWPIPQGYLDARIAAAVIALINSIGNLGGFVA 405 Query: 361 PTTFGYLEQRTGSIQGGLMGLAITSLVAAGVVFLARSGPGTQR 403 PTTFG+LEQ TGSIQGGL GLA TSL+AA V+F AR+ P R Sbjct: 406 PTTFGFLEQTTGSIQGGLYGLAATSLLAAIVIFFARTTPRGDR 448 >ref|ZP_07005010.1| Major facilitator family transporter [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gb|EFH99586.1| Major facilitator family transporter [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 471 Score = 566 bits (1458), Expect = e-159, Method: Composition-based stats. Identities = 305/399 (76%), Positives = 349/399 (87%) Query: 1 MFIVNYIDRVNIGFVRSHLATDVGISTAAYGLGAGLFFVGYAIFEVPSNLLLQRFGAKAW 60 MFIVNYIDRVNIGFVRSHL TD+GI AAYGLGAGLFFVGYA+FEVPSN+LLQR+GA+AW Sbjct: 37 MFIVNYIDRVNIGFVRSHLETDLGIGAAAYGLGAGLFFVGYALFEVPSNMLLQRYGARAW 96 Query: 61 LTRIMATWGLAATAMAFVNSETTFYLLRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA 120 LTRIM TWG AA AMAFV ET+FY+LRF+LGAAEAGFFPG+IYYFTQWLP+S+RG+AMA Sbjct: 97 LTRIMFTWGAAAMAMAFVQGETSFYVLRFILGAAEAGFFPGIIYYFTQWLPSSDRGKAMA 156 Query: 121 IFLSGSALASILSGPISGGLLQLEGAGLHGWQWMFIIEGMASVVLCGFVWFWLDSMPADA 180 +FLSGSA+AS++SGP+SG LL +EG LHGWQWMF+IEG AS+VLCGFVWFWL S P +A Sbjct: 157 LFLSGSAIASVISGPVSGALLGIEGLSLHGWQWMFLIEGFASIVLCGFVWFWLQSHPHEA 216 Query: 181 RWLSAEERTAITGTIVAEQAERMKHKPAHVSPLQLLRDPQILIFCFIYFSISLTIYGATF 240 WLS EE+TA++ I EQ R + S +LL D QIL+FCFIYFS++LTIYGATF Sbjct: 217 TWLSDEEKTALSTAISEEQRLREATQTVRPSVFRLLADRQILLFCFIYFSVALTIYGATF 276 Query: 241 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARFRHQQAWAATALVIAAIGM 300 WLPS+IRKMGSFSDF+VGLFNS+PW+ISIVAMY FAALAARF+HQQAW A LVIAA+GM Sbjct: 277 WLPSMIRKMGSFSDFEVGLFNSVPWIISIVAMYGFAALAARFKHQQAWVAVTLVIAAVGM 336 Query: 301 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQGYLDARIAAGVIALINSIGNLGGFVA 360 F ST G V+AFV+ICFAA+GFKAAS+LFWP+PQGYLDARIAA VIALINSIGNLGGFVA Sbjct: 337 FMSTIGGPVFAFVAICFAAIGFKAASALFWPIPQGYLDARIAAAVIALINSIGNLGGFVA 396 Query: 361 PTTFGYLEQRTGSIQGGLMGLAITSLVAAGVVFLARSGP 399 PTTFG+LEQ TGSIQGGL GLA TSL+AA V+F AR+ P Sbjct: 397 PTTFGFLEQTTGSIQGGLYGLAATSLLAAVVIFFARTTP 435 >ref|YP_235792.1| major facilitator transporter [Pseudomonas syringae pv. syringae B728a] gb|AAY37754.1| Major facilitator superfamily [Pseudomonas syringae pv. syringae B728a] Length = 464 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 309/403 (76%), Positives = 350/403 (86%) Query: 1 MFIVNYIDRVNIGFVRSHLATDVGISTAAYGLGAGLFFVGYAIFEVPSNLLLQRFGAKAW 60 MFIVNYIDRVNIGFVRSHL TD+GI AAYGLGAGLFFVGYA+FEVPSN+LLQR+GA+AW Sbjct: 37 MFIVNYIDRVNIGFVRSHLETDLGIGAAAYGLGAGLFFVGYALFEVPSNMLLQRYGARAW 96 Query: 61 LTRIMATWGLAATAMAFVNSETTFYLLRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA 120 LTRIM TWG AA AMAFV ET+FY+LRF+LGAAEAGFFPG+IYYFTQWLP+S+RG+AMA Sbjct: 97 LTRIMFTWGAAAMAMAFVQGETSFYVLRFILGAAEAGFFPGIIYYFTQWLPSSDRGKAMA 156 Query: 121 IFLSGSALASILSGPISGGLLQLEGAGLHGWQWMFIIEGMASVVLCGFVWFWLDSMPADA 180 +FLSGSA+AS++SGP+SG LL LEG LHGWQWMF+IEG AS+VLCGFVWFWL S P +A Sbjct: 157 LFLSGSAIASVISGPVSGALLGLEGMNLHGWQWMFLIEGFASIVLCGFVWFWLQSHPHEA 216 Query: 181 RWLSAEERTAITGTIVAEQAERMKHKPAHVSPLQLLRDPQILIFCFIYFSISLTIYGATF 240 RWLS EE+TA++ I EQ R + S +LL D QIL+FCFIYFS++LTIYGATF Sbjct: 217 RWLSDEEKTALSTAIAEEQRLREASQTVRPSVFRLLADRQILLFCFIYFSVALTIYGATF 276 Query: 241 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARFRHQQAWAATALVIAAIGM 300 WLPS+IRKMGSFSDF+VGLFNSIPW+ISIVAMY FAALAARF+HQQAW A LVIAA GM Sbjct: 277 WLPSMIRKMGSFSDFEVGLFNSIPWIISIVAMYGFAALAARFKHQQAWVAVTLVIAAAGM 336 Query: 301 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQGYLDARIAAGVIALINSIGNLGGFVA 360 F ST G V+AFV+ICFAA+GFKAAS+LFWP+PQGYLDARIAA VIALINSIGNLGGFVA Sbjct: 337 FMSTVGGPVFAFVAICFAAIGFKAASALFWPIPQGYLDARIAAAVIALINSIGNLGGFVA 396 Query: 361 PTTFGYLEQRTGSIQGGLMGLAITSLVAAGVVFLARSGPGTQR 403 PTTFG+LEQ TGSIQGGL GLA TSL+AA V+F AR+ P R Sbjct: 397 PTTFGFLEQTTGSIQGGLYGLAATSLLAAVVIFFARTTPRGDR 439 >ref|ZP_06477612.1| tartrate transporter, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 454 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 305/399 (76%), Positives = 349/399 (87%) Query: 1 MFIVNYIDRVNIGFVRSHLATDVGISTAAYGLGAGLFFVGYAIFEVPSNLLLQRFGAKAW 60 MFIVNYIDRVNIGFVRSHL TD+GI AAYGLGAGLFFVGYA+FEVPSN+LLQR+GA+AW Sbjct: 20 MFIVNYIDRVNIGFVRSHLETDLGIGAAAYGLGAGLFFVGYALFEVPSNMLLQRYGARAW 79 Query: 61 LTRIMATWGLAATAMAFVNSETTFYLLRFLLGAAEAGFFPGVIYYFTQWLPASERGRAMA 120 LTRIM TWG AA AMAFV ET+FY+LRF+LGAAEAGFFPG+IYYFTQWLP+S+RG+AMA Sbjct: 80 LTRIMFTWGAAAMAMAFVQGETSFYVLRFILGAAEAGFFPGIIYYFTQWLPSSDRGKAMA 139 Query: 121 IFLSGSALASILSGPISGGLLQLEGAGLHGWQWMFIIEGMASVVLCGFVWFWLDSMPADA 180 +FLSGSA+AS++SGP+SG LL +EG LHGWQWMF+IEG AS+VLCGFVWFWL S P +A Sbjct: 140 LFLSGSAIASVISGPVSGALLGIEGLSLHGWQWMFLIEGFASIVLCGFVWFWLQSHPHEA 199 Query: 181 RWLSAEERTAITGTIVAEQAERMKHKPAHVSPLQLLRDPQILIFCFIYFSISLTIYGATF 240 WLS EE+TA++ I EQ R + S +LL D QIL+FCFIYFS++LTIYGATF Sbjct: 200 TWLSDEEKTALSTAIAEEQRLREATQTVRPSVFRLLADRQILLFCFIYFSVALTIYGATF 259 Query: 241 WLPSIIRKMGSFSDFQVGLFNSIPWLISIVAMYAFAALAARFRHQQAWAATALVIAAIGM 300 WLPS+IRKMGSFSDF+VGLFNS+PW+ISIVAMY FAALAARF+HQQAW A LVIAA+GM Sbjct: 260 WLPSMIRKMGSFSDFEVGLFNSVPWIISIVAMYGFAALAARFKHQQAWVAVTLVIAAVGM 319 Query: 301 FASTFGNSVYAFVSICFAAVGFKAASSLFWPLPQGYLDARIAAGVIALINSIGNLGGFVA 360 F ST G V+AFV+ICFAA+GFKAAS+LFWP+PQGYLDARIAA VIALINSIGNLGGFVA Sbjct: 320 FMSTIGGPVFAFVAICFAAIGFKAASALFWPIPQGYLDARIAAAVIALINSIGNLGGFVA 379 Query: 361 PTTFGYLEQRTGSIQGGLMGLAITSLVAAGVVFLARSGP 399 PTTFG+LEQ TGSIQGGL GLA TSL+AA V+F AR+ P Sbjct: 380 PTTFGFLEQTTGSIQGGLYGLAATSLLAAVVIFFARTTP 418