BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3010.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774569.1| GntR family transcription regulator protein ... 352 3e-95 ref|YP_004360225.1| GntR family transcription regulator protein ... 290 9e-77 ref|YP_001889983.1| GntR family transcriptional regulator [Burkh... 271 6e-71 ref|ZP_03268524.1| transcriptional regulator, GntR family [Burkh... 270 1e-70 ref|ZP_06841409.1| transcriptional regulator, GntR family [Burkh... 270 2e-70 >ref|YP_003774569.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62661.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 352 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 207/234 (88%), Positives = 219/234 (93%) Query: 2 STATEPITLNVPPLDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIR 61 ST+T PI + PPLDRSRHAAPQVFEHLRELIIG+RL P TVLQRAELAAQYGLSQTPIR Sbjct: 3 STSTAPIVITPPPLDRSRHAAPQVFEHLRELIIGMRLAPATVLQRAELAAQYGLSQTPIR 62 Query: 62 DALIKLGEEGLVDIFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRL 121 DALIKLGEEGLVDIFPQHATVVSA+NVT ARQAHFLRRSIELEIVHTLA + + ALV+RL Sbjct: 63 DALIKLGEEGLVDIFPQHATVVSAVNVTLARQAHFLRRSIELEIVHTLAAQADAALVNRL 122 Query: 122 RDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPL 181 RDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELW+MVRRQSG+LDRLRNLHVP+ Sbjct: 123 RDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELWSMVRRQSGHLDRLRNLHVPI 182 Query: 182 PGKTKRVLRDHAALVDAIAAGDAEAAQAALREHLSGTLTHLEEIRQRFPHYLKD 235 PGKT RVLRDHAA+VDAIAAGD AAQAALREHLSGTL LEEIRQRFPHY+KD Sbjct: 183 PGKTARVLRDHAAIVDAIAAGDPAAAQAALREHLSGTLAQLEEIRQRFPHYVKD 236 >ref|YP_004360225.1| GntR family transcription regulator protein [Burkholderia gladioli BSR3] gb|AEA60269.1| GntR family transcription regulator protein [Burkholderia gladioli BSR3] Length = 242 Score = 290 bits (743), Expect = 9e-77, Method: Composition-based stats. Identities = 168/232 (72%), Positives = 195/232 (84%) Query: 4 ATEPITLNVPPLDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDA 63 A+ P LN P DRSRHAAPQVFEHLRELI+ +R+ PGTVLQRAELAA YGLSQTPIRDA Sbjct: 11 ASSPAELNAPSFDRSRHAAPQVFEHLRELIVAMRIAPGTVLQRAELAALYGLSQTPIRDA 70 Query: 64 LIKLGEEGLVDIFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLRD 123 LI+LGEEGLVDIFPQHATVVS+I+V ARQ FLRRSIELEIVH LA L++RL D Sbjct: 71 LIRLGEEGLVDIFPQHATVVSSIDVPLARQQLFLRRSIELEIVHRLASAPSAPLLARLAD 130 Query: 124 SIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPLPG 183 SIE+QR+ A RENY EFV AD+AFH+ MY+AA+V +LW +VRRQSG+LDRLRNLHVP+PG Sbjct: 131 SIELQRMHAARENYVEFVHADEAFHKLMYDAAEVMDLWTLVRRQSGHLDRLRNLHVPIPG 190 Query: 184 KTKRVLRDHAALVDAIAAGDAEAAQAALREHLSGTLTHLEEIRQRFPHYLKD 235 KT+RVL HAA+V AIAAG+ EAAQAALR HLSGTL+ ++EIR RF +LK+ Sbjct: 191 KTERVLEQHAAIVAAIAAGNPEAAQAALRAHLSGTLSQVDEIRARFGGFLKN 242 >ref|YP_001889983.1| GntR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD20612.1| transcriptional regulator, GntR family [Burkholderia phytofirmans PsJN] Length = 234 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 151/221 (68%), Positives = 179/221 (80%) Query: 15 LDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDALIKLGEEGLVD 74 LDRSRHAAPQVFE LRE+I+ + L PGTVL RA+LA QYGLSQTP+RDAL+KLGEEGLVD Sbjct: 13 LDRSRHAAPQVFERLREMILSLELAPGTVLSRADLATQYGLSQTPVRDALMKLGEEGLVD 72 Query: 75 IFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLRDSIEVQRVLAGR 134 IFPQHATVVS INVT A QAHFLRRSIELEIV TLA + + AL+++LR +I Q + Sbjct: 73 IFPQHATVVSQINVTSALQAHFLRRSIELEIVRTLAEQRDAALIAQLRATIAGQMEVRDP 132 Query: 135 ENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPLPGKTKRVLRDHAA 194 +N +F L DQAFHRQMYEAA VP+LW +VRR SG++DRLR LH+P+ GKT V+RDH Sbjct: 133 KNIEQFSLLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLHLPVEGKTMAVVRDHTE 192 Query: 195 LVDAIAAGDAEAAQAALREHLSGTLTHLEEIRQRFPHYLKD 235 +VDAI GDAEAAQAALR HLSGTL+ +++IR R P +L D Sbjct: 193 IVDAIERGDAEAAQAALRNHLSGTLSQVDQIRTRHPDFLTD 233 >ref|ZP_03268524.1| transcriptional regulator, GntR family [Burkholderia sp. H160] gb|EDZ99878.1| transcriptional regulator, GntR family [Burkholderia sp. H160] Length = 234 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 149/224 (66%), Positives = 179/224 (79%) Query: 12 VPPLDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPIRDALIKLGEEG 71 V LDRSRHAAPQVFE LRE+I+ + L PGTVL R ELA QYGLSQTP+RDAL+KLGEEG Sbjct: 10 VKRLDRSRHAAPQVFERLREMILSLELTPGTVLSRTELANQYGLSQTPVRDALMKLGEEG 69 Query: 72 LVDIFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSRLRDSIEVQRVL 131 LVDI+PQHATVVS INVT A QAHFLRRSIELE+V TLA + + AL+++LR +I Q L Sbjct: 70 LVDIYPQHATVVSQINVTSALQAHFLRRSIELEVVRTLAEQRDAALIAQLRATIARQTEL 129 Query: 132 AGRENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVPLPGKTKRVLRD 191 +NY +F L DQAFHRQMYEAA VP+LW +VRR SG++DRLR L++P+ GKT V+RD Sbjct: 130 LDLKNYEQFSLLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLNLPVEGKTMAVVRD 189 Query: 192 HAALVDAIAAGDAEAAQAALREHLSGTLTHLEEIRQRFPHYLKD 235 H +VDAI GD EAAQAALR+HLSGTL+ +++IR P +L D Sbjct: 190 HTEIVDAIDKGDVEAAQAALRKHLSGTLSQIDQIRASHPDFLAD 233 >ref|ZP_06841409.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] gb|EFG70935.1| transcriptional regulator, GntR family [Burkholderia sp. Ch1-1] Length = 234 Score = 270 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 152/235 (64%), Positives = 181/235 (77%), Gaps = 2/235 (0%) Query: 1 MSTATEPITLNVPPLDRSRHAAPQVFEHLRELIIGVRLVPGTVLQRAELAAQYGLSQTPI 60 M T P T LDRSRHAAPQVFE LRE+I+ + L PGTVL RA+LA QYGLSQTP+ Sbjct: 1 MKTHASPST--ATRLDRSRHAAPQVFERLREMILSLELAPGTVLSRADLAIQYGLSQTPV 58 Query: 61 RDALIKLGEEGLVDIFPQHATVVSAINVTQARQAHFLRRSIELEIVHTLARRTEGALVSR 120 RDAL+KLGEEGLVDIFPQHATVVS INVT A QAHFLRRSIELE+V TLA + + AL + Sbjct: 59 RDALMKLGEEGLVDIFPQHATVVSQINVTSALQAHFLRRSIELEVVRTLAEQRDAALTGQ 118 Query: 121 LRDSIEVQRVLAGRENYAEFVLADQAFHRQMYEAAQVPELWAMVRRQSGNLDRLRNLHVP 180 LR +I Q L +NY +F + DQAFHRQMYEAA VP+LW +VRR SG++DRLR LH+P Sbjct: 119 LRATIARQMELRDLKNYEQFSVLDQAFHRQMYEAAGVPQLWDLVRRLSGHIDRLRRLHLP 178 Query: 181 LPGKTKRVLRDHAALVDAIAAGDAEAAQAALREHLSGTLTHLEEIRQRFPHYLKD 235 + GKT V+RDH +V+AI GD EAAQAALR+HLSGTL +++IR P++L D Sbjct: 179 VEGKTMAVVRDHTEIVEAIEKGDVEAAQAALRKHLSGTLNQVDQIRNSHPNFLTD 233