BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3007.p (273 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774571.1| hypothetical protein Hsero_1146 [Herbaspiril... 192 5e-47 ref|ZP_07673966.1| periplasmic ligand-binding sensor protein [Ra... 140 3e-31 ref|ZP_00944105.1| Hypothetical Protein RRSL_03436 [Ralstonia so... 132 5e-29 gb|AEG70690.1| conserved hypothetical protein [Ralstonia solanac... 132 5e-29 ref|YP_003747269.1| hypothetical protein RCFBP_mp10049 [Ralstoni... 132 6e-29 >ref|YP_003774571.1| hypothetical protein Hsero_1146 [Herbaspirillum seropedicae SmR1] gb|ADJ62663.1| conserved hypothetical transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 174/219 (79%), Positives = 182/219 (83%), Gaps = 10/219 (4%) Query: 1 MSPQETQALQDFLQQLTQVQGISKDAQADAMIQAAVARQPDAAYLLVQRALLMEQALNAT 60 MSPQETQALQDFLQQLT+V+GISKD QADAMI AAVARQPDAAYLLVQRALL+EQALNA Sbjct: 1 MSPQETQALQDFLQQLTEVRGISKDPQADAMIAAAVARQPDAAYLLVQRALLVEQALNAA 60 Query: 61 KAQVAALQNQVQSLQANAAGGARSSGFLDGNAWGNAPAAASARPQP-----AAPAYMPAP 115 KAQVAALQ+QVQ+LQA GGAR GFLDGNAWG A A ++RPQ A PA Sbjct: 61 KAQVAALQSQVQALQA---GGAREPGFLDGNAWGRA--ATASRPQAYGSAAPATPAAPAY 115 Query: 116 AQPYAAPQQAAPAYQAAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNSG 175 A P A QAAPA APSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGN G Sbjct: 116 AAPAAPAYQAAPAPAPAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNGG 175 Query: 176 SGLAHQNGLSAPVENIENTTVNNYYGSDGDRKSDFASND 214 SG AHQNGLSAPVENIENTTVNNYYGSD DR SD AS+D Sbjct: 176 SGFAHQNGLSAPVENIENTTVNNYYGSDADRSSDQASSD 214 >ref|ZP_07673966.1| periplasmic ligand-binding sensor protein [Ralstonia sp. 5_7_47FAA] gb|EFP67641.1| periplasmic ligand-binding sensor protein [Ralstonia sp. 5_7_47FAA] Length = 230 Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats. Identities = 108/209 (51%), Positives = 135/209 (64%), Gaps = 13/209 (6%) Query: 1 MSPQETQALQDFLQQLTQVQGISKDAQADAMIQAAVARQPDAAYLLVQRALLMEQALNAT 60 MSPQE QAL++FL QLTQ + +KD QA+A I AVARQPDAAYLLVQRA+L++QAL + Sbjct: 1 MSPQEQQALENFLAQLTQARVGAKDPQAEARILDAVARQPDAAYLLVQRAMLLDQALASA 60 Query: 61 KAQVAALQNQVQSLQANAAGGARSSGFLD-GNAWGNAPAAASARPQPAAPAYMPAPAQPY 119 +AQ+A LQNQ+Q+ QA RS+ F+D N WG + ++ P P PAY P A P Sbjct: 61 QAQIATLQNQLQAAQA-----GRSTSFMDSANNWG----SHASSPAP-NPAYAPQQAAPV 110 Query: 120 AAPQQAAPAYQAAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNSGSGLA 179 P Q PA SGFF GG+GS LG+VA TAAGVAGGA L+QGIE++F+ NSG Sbjct: 111 QMPPQPQPAPAQPARSGFFSGGLGSTLGSVATTAAGVAGGALLFQGIENMFHHNSGG--G 168 Query: 180 HQNGLSAPVENIENTTVNNYYGSDGDRKS 208 G + T +NNYY SD + S Sbjct: 169 GFFGQQPVMGGTTETVINNYYDSDSNGNS 197 >ref|ZP_00944105.1| Hypothetical Protein RRSL_03436 [Ralstonia solanacearum UW551] ref|YP_002256891.1| hypothetical protein RSIPO_03190 [Ralstonia solanacearum IPO1609] gb|EAP73470.1| Hypothetical Protein RRSL_03436 [Ralstonia solanacearum UW551] emb|CAQ58772.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 220 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 104/218 (47%), Positives = 132/218 (60%), Gaps = 19/218 (8%) Query: 1 MSPQETQALQDFLQQLTQVQGISKDAQADAMIQAAVARQPDAAYLLVQRALLMEQALNAT 60 M+PQE QAL FL QLTQ Q +KD QA+ I AVARQPDAAYLLVQRA+L++QAL + Sbjct: 1 MTPQELQALDSFLAQLTQAQAGAKDPQAETRIADAVARQPDAAYLLVQRAMLLDQALASA 60 Query: 61 KAQVAALQNQVQSLQANAAGGARSSGFLDGNAWGNAPAAASARPQPAAPAYMPAPAQPYA 120 KAQ+A LQ ++Q+ QA +G FLD PA+ + A P P+ Sbjct: 61 KAQIAQLQTRLQTAQAAGSG-----AFLD-------PASTWGQHANAVP---PSAMASSP 105 Query: 121 APQQAAPAYQAAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNSGSGLAH 180 P A PA GFFG G+ LG++A TAAGVAGGAFL+QGIE+LF+ NSGSG Sbjct: 106 MPPAAQPAPVQPSRPGFFGDGVRGALGSIATTAAGVAGGAFLFQGIENLFHRNSGSGFLG 165 Query: 181 QNGLSAPVENIENTTVNNYYGSDGD--RKSDFASNDRG 216 Q + + E T +NNYY +D R++D S+D G Sbjct: 166 QPAMG--MLPTETTVINNYYDNDDAPVRRADAGSSDDG 201 >gb|AEG70690.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 220 Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats. Identities = 106/221 (47%), Positives = 133/221 (60%), Gaps = 21/221 (9%) Query: 1 MSPQETQALQDFLQQLTQVQGISKDAQADAMIQAAVARQPDAAYLLVQRALLMEQALNAT 60 M+PQE QAL FL QLTQ Q +KD QA+A I AVARQPDAAYLLVQRA+L++QAL + Sbjct: 1 MTPQELQALDSFLAQLTQAQAGTKDPQAEARIADAVARQPDAAYLLVQRAMLLDQALASA 60 Query: 61 KAQVAALQNQVQSLQANAAGGARSSGFLD-GNAWGNAPAAASARPQPAAPAYMPAPAQPY 119 KAQ+A LQ ++Q+ QA +G FLD + WG A A P+ Sbjct: 61 KAQIAQLQTRLQTAQAAGSG-----AFLDPASTWGQ-----------HANALPPSAMASA 104 Query: 120 AAPQQAAPAYQAAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNSGSGLA 179 P A PA GFFG G+ LG++A TAAGVAGGAFL+QGIE+LF+ NSGSG Sbjct: 105 PMPPAAQPAPVQPSRPGFFGDGVRGALGSIATTAAGVAGGAFLFQGIENLFHRNSGSGFL 164 Query: 180 HQNGLSAPVENIENTTVNNYYGSDG--DRKSDFASNDRGPP 218 Q + + E T +NNYY +D R++D S+D G P Sbjct: 165 GQPAMG--MLPTETTVINNYYDNDDAPARRADAGSSDGGLP 203 >ref|YP_003747269.1| hypothetical protein RCFBP_mp10049 [Ralstonia solanacearum CFBP2957] emb|CBJ52843.1| conserved protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 220 Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats. Identities = 103/219 (47%), Positives = 130/219 (59%), Gaps = 21/219 (9%) Query: 1 MSPQETQALQDFLQQLTQVQGISKDAQADAMIQAAVARQPDAAYLLVQRALLMEQALNAT 60 M+PQE Q L FL QLTQ Q +KD QA+A I AVARQPDAAYLLVQRA+L++QAL + Sbjct: 1 MTPQELQTLDSFLAQLTQAQAGAKDPQAEARIADAVARQPDAAYLLVQRAMLLDQALASA 60 Query: 61 KAQVAALQNQVQSLQANAAGGARSSGFLD-GNAWGNAPAAASARPQPAAPAYMPAPAQPY 119 KAQ+A LQ ++Q+ QA +G FLD + WG A A P+ Sbjct: 61 KAQIAQLQTRLQTAQAAGSG-----AFLDPASTWGQ-----------HANAIPPSAMASA 104 Query: 120 AAPQQAAPAYQAAPSSGFFGGGMGSMLGTVAATAAGVAGGAFLYQGIEHLFNGNSGSGLA 179 P A PA GFFG + LG++A TAAGVAGGAFL+QGIE+LF+ NSGSG Sbjct: 105 PMPPAAQPAPAQPSRPGFFGDSVRGALGSIATTAAGVAGGAFLFQGIENLFHRNSGSGFL 164 Query: 180 HQNGLSAPVENIENTTVNNYYGSDG--DRKSDFASNDRG 216 Q + + E T +NNYY +D R++D S+D G Sbjct: 165 GQPAMG--MLPTETTVINNYYDNDDALARRADAGSSDDG 201