BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.3006.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774993.1| glycine cleavage system protein H [Herbaspir...   154   4e-36
ref|ZP_08781459.1| Glycine cleavage system H protein [Methylobac...    94   5e-18
ref|YP_410913.1| glycine cleavage system protein H [Nitrosospira...    94   7e-18
ref|ZP_01615803.1| glycine cleavage system protein H [marine gam...    93   1e-17
ref|YP_003897596.1| glycine cleavage system protein H [Halomonas...    93   2e-17

>ref|YP_003774993.1| glycine cleavage system protein H [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ63085.1| glycine cleavage system H (lipoate-binding) protein
          [Herbaspirillum seropedicae SmR1]
          Length = 125

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/75 (97%), Positives = 75/75 (100%)

Query: 1  MHIPDHLVYAETHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLAKGAESGIV 60
          MHIPDHLVYA+THEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLA+GAESGIV
Sbjct: 1  MHIPDHLVYAQTHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLARGAESGIV 60

Query: 61 ESNKTASDLHAPVDG 75
          ESNKTASDLHAPVDG
Sbjct: 61 ESNKTASDLHAPVDG 75


>ref|ZP_08781459.1| Glycine cleavage system H protein [Methylobacter tundripaludum
          SV96]
 gb|EGW23634.1| Glycine cleavage system H protein [Methylobacter tundripaludum
          SV96]
          Length = 127

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 55/73 (75%)

Query: 3  IPDHLVYAETHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLAKGAESGIVES 62
          +PD+L YA+THEW K+EDD  + +GITDF QE+LG LVY+++P +G+ +    +  +VES
Sbjct: 4  VPDNLKYAKTHEWAKMEDDNIIRVGITDFAQEELGDLVYIELPELGRKVTAQEQCAVVES 63

Query: 63 NKTASDLHAPVDG 75
           KTASDL +PV G
Sbjct: 64 VKTASDLFSPVSG 76


>ref|YP_410913.1| glycine cleavage system protein H [Nitrosospira multiformis ATCC
          25196]
 sp|Q2YCK0|GCSH_NITMU RecName: Full=Glycine cleavage system H protein
 gb|ABB73521.1| glycine cleavage system H protein [Nitrosospira multiformis ATCC
          25196]
          Length = 129

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 56/75 (74%)

Query: 1  MHIPDHLVYAETHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLAKGAESGIV 60
          M IP+ L Y ++HEWV+LEDDGT TIGIT   QE LG +V+V+ PAVG+ L +G E  +V
Sbjct: 1  MSIPNDLKYTKSHEWVRLEDDGTATIGITQHAQELLGDMVFVETPAVGRQLKQGDECAVV 60

Query: 61 ESNKTASDLHAPVDG 75
          ES K A+D++AP+ G
Sbjct: 61 ESVKAAADVYAPITG 75


>ref|ZP_01615803.1| glycine cleavage system protein H [marine gamma proteobacterium
          HTCC2143]
 gb|EAW32886.1| glycine cleavage system protein H [marine gamma proteobacterium
          HTCC2143]
          Length = 149

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/72 (56%), Positives = 54/72 (75%)

Query: 4  PDHLVYAETHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLAKGAESGIVESN 63
          P  L YA +HEW +L+DDGT+T+GITD  QE LG +V+V+ P VG  LA G E+G+VES 
Sbjct: 25 PIELKYASSHEWARLDDDGTITVGITDHAQEALGDVVFVECPEVGSTLAAGDEAGVVESV 84

Query: 64 KTASDLHAPVDG 75
          K ASD++AP+ G
Sbjct: 85 KAASDIYAPLSG 96


>ref|YP_003897596.1| glycine cleavage system protein H [Halomonas elongata DSM 2581]
 emb|CBV42411.1| K02437 glycine cleavage system H protein [Halomonas elongata DSM
          2581]
          Length = 130

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 56/73 (76%)

Query: 3  IPDHLVYAETHEWVKLEDDGTLTIGITDFGQEQLGPLVYVDMPAVGKVLAKGAESGIVES 62
          IP +L YAE+HEW++   DGT+TIGITD  Q+ LG +V+V++P VG  LAKG E G+VES
Sbjct: 4  IPPNLRYAESHEWIQDNGDGTVTIGITDHAQQSLGDVVFVELPEVGASLAKGDEFGVVES 63

Query: 63 NKTASDLHAPVDG 75
           K ASDL+APV G
Sbjct: 64 VKAASDLYAPVSG 76