BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3004.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774991.1| membrane associated protein [Herbaspirillum ... 262 4e-68 ref|YP_995617.1| hypothetical protein Veis_0819 [Verminephrobact... 225 5e-57 ref|YP_004685429.1| carboxymuconolactone decarboxylase family pr... 196 3e-48 emb|CCA86194.1| putative Long-chain fatty-acyl-CoA hydrolase [Ra... 181 1e-43 gb|EGP43027.1| carboxymuconolactone decarboxylase family protein... 179 5e-43 >ref|YP_003774991.1| membrane associated protein [Herbaspirillum seropedicae SmR1] gb|ADJ63083.1| membrane associated protein [Herbaspirillum seropedicae SmR1] Length = 173 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 155/173 (89%), Positives = 162/173 (93%) Query: 75 MSTPVYDISKDVIDQLAGLAAGSPLHGLRHQRDKVAVASQGSYDTLFDPALEGIGLDERL 134 M+TPVYDI DVIDQLAGL+ GS LH LRHQRDKVAVASQGSYDTLFDPALEGIGLDERL Sbjct: 1 MTTPVYDIHADVIDQLAGLSVGSALHSLRHQRDKVAVASQGSYDTLFDPALEGIGLDERL 60 Query: 135 LVALYACRLAGASDLAAHYRARAEAVPADAAQLAAADSGEPEQLPQGRLRAMLVFTRALT 194 LVALYACRLAGA DL AHYRARA + +AAQLAAA++GEPEQLP+GRLRAMLVFTRALT Sbjct: 61 LVALYACRLAGADDLVAHYRARALVISVEAAQLAAAETGEPEQLPEGRLRAMLVFTRALT 120 Query: 195 QRPVEGDKAAIEKLPAAGISTPAVVALSQLIAFVSYQLRVVAGLKAMRAAAAQ 247 QRPVEGDKAAIEKLPAAGISTPAVVALSQLIAFVSYQLRVVAGLKAMRAAAAQ Sbjct: 121 QRPVEGDKAAIEKLPAAGISTPAVVALSQLIAFVSYQLRVVAGLKAMRAAAAQ 173 >ref|YP_995617.1| hypothetical protein Veis_0819 [Verminephrobacter eiseniae EF01-2] gb|ABM56599.1| conserved hypothetical membrane associated protein [Verminephrobacter eiseniae EF01-2] Length = 178 Score = 225 bits (573), Expect = 5e-57, Method: Composition-based stats. Identities = 137/178 (76%), Positives = 157/178 (88%), Gaps = 1/178 (0%) Query: 75 MSTPV-YDISKDVIDQLAGLAAGSPLHGLRHQRDKVAVASQGSYDTLFDPALEGIGLDER 133 M+TP+ YDI DVID+LAGL AGS LH LRHQR+KVAVASQGSYD+LFDPALEGIGLDER Sbjct: 1 MTTPMEYDIDDDVIDKLAGLPAGSHLHALRHQREKVAVASQGSYDSLFDPALEGIGLDER 60 Query: 134 LLVALYACRLAGASDLAAHYRARAEAVPADAAQLAAADSGEPEQLPQGRLRAMLVFTRAL 193 LLVALYACRLAGA D+AAHYRAR A+PADAAQ+A A G PE+LP+GRLRAML F RAL Sbjct: 61 LLVALYACRLAGAQDVAAHYRARLYALPADAAQIAVAADGAPERLPEGRLRAMLAFARAL 120 Query: 194 TQRPVEGDKAAIEKLPAAGISTPAVVALSQLIAFVSYQLRVVAGLKAMRAAAAQQGES 251 T+RP+EG++A + LPAAGISTPAVVAL+QLIAFVSYQLRVVAGLKAM++A+ Q G + Sbjct: 121 TERPIEGNEAVLHTLPAAGISTPAVVALAQLIAFVSYQLRVVAGLKAMKSASNQAGTA 178 >ref|YP_004685429.1| carboxymuconolactone decarboxylase family protein 4 [Cupriavidus necator N-1] gb|AEI76948.1| carboxymuconolactone decarboxylase family protein 4 [Cupriavidus necator N-1] Length = 384 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 107/164 (65%), Positives = 134/164 (81%) Query: 83 SKDVIDQLAGLAAGSPLHGLRHQRDKVAVASQGSYDTLFDPALEGIGLDERLLVALYACR 142 + DV+DQ+AGLAAGS +H LRH RDKV ++QGSY+ LFDPAL G+ L ERLLVALYA R Sbjct: 8 ATDVVDQVAGLAAGSAIHTLRHARDKVVASTQGSYNGLFDPALPGLTLAERLLVALYAAR 67 Query: 143 LAGASDLAAHYRARAEAVPADAAQLAAADSGEPEQLPQGRLRAMLVFTRALTQRPVEGDK 202 LAGA+DL AHYRAR +A+ ADAA +A A G+P+ L RLRA+L FTR L++RPVEGD+ Sbjct: 68 LAGAADLVAHYRARLQAIEADAALVALAQQGDPDTLADARLRAILAFTRTLSERPVEGDQ 127 Query: 203 AAIEKLPAAGISTPAVVALSQLIAFVSYQLRVVAGLKAMRAAAA 246 A ++ LPAAG++TP VV L+QLIAF+SYQ+R+VAGLKAM+A A Sbjct: 128 ATLKTLPAAGLATPDVVTLAQLIAFLSYQVRLVAGLKAMQALGA 171 >emb|CCA86194.1| putative Long-chain fatty-acyl-CoA hydrolase [Ralstonia syzygii R24] Length = 635 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 110/192 (57%), Positives = 136/192 (70%), Gaps = 10/192 (5%) Query: 54 AAGAALPARRAGQAFIHKGKRMSTPVYDISKDVIDQLAGLAAGSPLHGLRHQRDKVAVAS 113 A G ++P R+ A STP + D++DQ AGLA GS +H LRH RDKVAVA+ Sbjct: 435 ARGPSVPESRSLSAM------ESTP----ANDIVDQAAGLADGSAIHTLRHARDKVAVAT 484 Query: 114 QGSYDTLFDPALEGIGLDERLLVALYACRLAGASDLAAHYRARAEAVPADAAQLAAADSG 173 QGS+D LFD AL G+ L ERLLVALYACRL A +L+ HYRAR P DAA L A D G Sbjct: 485 QGSHDALFDAALPGLTLGERLLVALYACRLTPAPELSVHYRARLAETPVDAAALQAVDHG 544 Query: 174 EPEQLPQGRLRAMLVFTRALTQRPVEGDKAAIEKLPAAGISTPAVVALSQLIAFVSYQLR 233 +P L RLRA+L FTR L +RP++GD+ A+ +LPAAG++TP VV LSQLIAF+SYQ R Sbjct: 545 DPATLADTRLRAILAFTRTLIERPIDGDRDALLRLPAAGLATPDVVTLSQLIAFLSYQTR 604 Query: 234 VVAGLKAMRAAA 245 +VAGL+A+R AA Sbjct: 605 LVAGLRALREAA 616 >gb|EGP43027.1| carboxymuconolactone decarboxylase family protein 4 [Achromobacter xylosoxidans AXX-A] Length = 389 Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 101/165 (61%), Positives = 125/165 (75%) Query: 79 VYDISKDVIDQLAGLAAGSPLHGLRHQRDKVAVASQGSYDTLFDPALEGIGLDERLLVAL 138 VYD ++D++DQL GL A S + +RHQRDKVA A+QGSYD LFDPAL G+ L ERLLVAL Sbjct: 7 VYDAARDLVDQLVGLKADSATYAVRHQRDKVAAATQGSYDALFDPALAGLTLAERLLVAL 66 Query: 139 YACRLAGASDLAAHYRARAEAVPADAAQLAAADSGEPEQLPQGRLRAMLVFTRALTQRPV 198 YA RL + LAAHYR R A AA + A+SG+P RL A+L FTR L ++PV Sbjct: 67 YAARLTPSPALAAHYRQRLVEAGASAADIQVAESGKPADAADPRLAAILEFTRKLIEKPV 126 Query: 199 EGDKAAIEKLPAAGISTPAVVALSQLIAFVSYQLRVVAGLKAMRA 243 EGD+AA++ LPAAG+STPAVV LSQL+AF+SYQ+R+VAGL+AM A Sbjct: 127 EGDEAALKTLPAAGVSTPAVVTLSQLVAFLSYQVRLVAGLQAMTA 171