BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3001.p (528 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774989.1| dipeptide ABC transporter periplasmic protei... 978 0.0 ref|YP_995615.1| extracellular solute-binding protein [Vermineph... 880 0.0 ref|YP_002981718.1| family 5 extracellular solute-binding protei... 823 0.0 ref|YP_001899653.1| family 5 extracellular solute-binding protei... 813 0.0 ref|YP_004685431.1| dipeptide transport system permease DppA [Cu... 810 0.0 >ref|YP_003774989.1| dipeptide ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63081.1| ABC-type dipeptide transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 528 Score = 978 bits (2527), Expect = 0.0, Method: Composition-based stats. Identities = 514/528 (97%), Positives = 528/528 (100%) Query: 1 MKKTLLTRLLAVALTGAALAAAADAAHAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFW 60 MKKTLLTRLLA+ALTGAALAAAADAAHAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFW Sbjct: 1 MKKTLLTRLLAIALTGAALAAAADAAHAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFW 60 Query: 61 DLLVQNDYNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPG 120 DLLVQNDYNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPG Sbjct: 61 DLLVQNDYNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPG 120 Query: 121 SVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHVGEKSTTENYNSG 180 SVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKH+GEKSTTENYNSG Sbjct: 121 SVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHIGEKSTTENYNSG 180 Query: 181 AAVVGTGPYKFVSYTPGDRVVMQRNDNYWNGKPLWDKVNYRYINNGAARTAALLSGDVDV 240 AAV+GTGPYKFVSYTPGDRVVMQRND+YWNGKPLW+KVNYRYINNGAARTAALLSGDVDV Sbjct: 181 AAVIGTGPYKFVSYTPGDRVVMQRNDDYWNGKPLWEKVNYRYINNGAARTAALLSGDVDV 240 Query: 241 IDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHEGPSPFITDNNGKQLEKNPLLDVR 300 IDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFH+GPSPFITDNNGKQL+KNPLLDVR Sbjct: 241 IDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHQGPSPFITDNNGKQLDKNPLLDVR 300 Query: 301 VRRAMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLAEAGF 360 VRRAMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLA+AGF Sbjct: 301 VRRAMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLADAGF 360 Query: 361 PEGFKLTLHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWASYSSRANKNEFAVSVL 420 P+GFKLT+HVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWA+YSSRANKNEFAVSVL Sbjct: 361 PDGFKLTIHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWAAYSSRANKNEFAVSVL 420 Query: 421 AWGNGTGEASYALVNVLGTVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILR 480 AWGNGTGEASYALVNVLG+VDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILR Sbjct: 421 AWGNGTGEASYALVNVLGSVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILR 480 Query: 481 GAAKTVSDEVGVIPLYHYQNIWAAKKGLKVTPISSDRTTAMMVTQDKK 528 GAAKTVS+EVGVIPLYHYQNIWAAKKGLKVTPISSDRTTAMMVT+DKK Sbjct: 481 GAAKTVSEEVGVIPLYHYQNIWAAKKGLKVTPISSDRTTAMMVTEDKK 528 >ref|YP_995615.1| extracellular solute-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM56597.1| extracellular solute-binding protein, family 5 [Verminephrobacter eiseniae EF01-2] Length = 549 Score = 880 bits (2275), Expect = 0.0, Method: Composition-based stats. Identities = 443/528 (83%), Positives = 485/528 (91%), Gaps = 6/528 (1%) Query: 1 MKKTLLTRLLAVALTGAALAAAADAAHAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFW 60 MKKTLL+ L+A A A A AQ LNIAFADPLSSLDPQLNNHAGDRSV+LHFW Sbjct: 28 MKKTLLSSLMAAA------LLGAACAGAQTLNIAFADPLSSLDPQLNNHAGDRSVNLHFW 81 Query: 61 DLLVQNDYNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPG 120 DLLV+N+YN+L PGLAVSW+NID KTWEFKLRP VKWQDGKPF A+DVIFSYQRAR VPG Sbjct: 82 DLLVENNYNRLQPGLAVSWENIDAKTWEFKLRPGVKWQDGKPFAAEDVIFSYQRARNVPG 141 Query: 121 SVATFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHVGEKSTTENYNSG 180 SVATFAGYLRTVESVTAKDPLTL+IKTNI NPDLPLNLASVHI+SKHVGEKS TENYNSG Sbjct: 142 SVATFAGYLRTVESVTAKDPLTLIIKTNIANPDLPLNLASVHIISKHVGEKSQTENYNSG 201 Query: 181 AAVVGTGPYKFVSYTPGDRVVMQRNDNYWNGKPLWDKVNYRYINNGAARTAALLSGDVDV 240 AA+VG+GPYK++SYTPGDR+VM+R+ +YW K +W+KVNYRYINN AARTAALLSGDVDV Sbjct: 202 AAMVGSGPYKYISYTPGDRIVMERSHDYWGPKQIWEKVNYRYINNAAARTAALLSGDVDV 261 Query: 241 IDKVSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHEGPSPFITDNNGKQLEKNPLLDVR 300 IDKVS SDLA+LKQSPNVKV+ YNGLRV+L+QP+FHEGPSP+ITDNNGKQL+ NPLLDVR Sbjct: 262 IDKVSASDLARLKQSPNVKVFQYNGLRVMLLQPTFHEGPSPYITDNNGKQLDNNPLLDVR 321 Query: 301 VRRAMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLAEAGF 360 VRRA+SLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIP D QAK LLA+AG+ Sbjct: 322 VRRALSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPNDVNQAKTLLAQAGY 381 Query: 361 PEGFKLTLHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWASYSSRANKNEFAVSVL 420 P+GFKLT+HVPNDRYPQAPE MQAVAQFWTRIG+KTQVEVLPWASYS+RA KNEFAVSVL Sbjct: 382 PQGFKLTIHVPNDRYPQAPEIMQAVAQFWTRIGVKTQVEVLPWASYSARAKKNEFAVSVL 441 Query: 421 AWGNGTGEASYALVNVLGTVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILR 480 AWGNGTGEASYALVNVL TVD KKG+GASNWN+YS+PA+DKALADSTAEFD A+REAILR Sbjct: 442 AWGNGTGEASYALVNVLATVDAKKGLGASNWNYYSNPAIDKALADSTAEFDVARREAILR 501 Query: 481 GAAKTVSDEVGVIPLYHYQNIWAAKKGLKVTPISSDRTTAMMVTQDKK 528 AA VSD+VGVIPLYHYQNIWAA+KGLKVTP SSDRTTAMMVTQDK+ Sbjct: 502 NAANIVSDDVGVIPLYHYQNIWAARKGLKVTPASSDRTTAMMVTQDKQ 549 >ref|YP_002981718.1| family 5 extracellular solute-binding protein [Ralstonia pickettii 12D] gb|ACS63046.1| extracellular solute-binding protein family 5 [Ralstonia pickettii 12D] Length = 526 Score = 823 bits (2126), Expect = 0.0, Method: Composition-based stats. Identities = 410/525 (78%), Positives = 465/525 (88%), Gaps = 1/525 (0%) Query: 4 TLLTRLLAVALTGAALAAAADAAHAQNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLL 63 T + RLLA +L AL A A A AQ LNIAFADPLSSLDPQLNNHAGDRSVD+HFWDLL Sbjct: 3 THVKRLLASSL-AVALFATAGAVSAQTLNIAFADPLSSLDPQLNNHAGDRSVDVHFWDLL 61 Query: 64 VQNDYNKLVPGLAVSWKNIDPKTWEFKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVA 123 V+N +NKL PGLA+SWK +DPKTWEFKLRPNVKW DG+PFTADDVIFSYQRAR+VPGSVA Sbjct: 62 VENKWNKLQPGLALSWKTLDPKTWEFKLRPNVKWHDGQPFTADDVIFSYQRARSVPGSVA 121 Query: 124 TFAGYLRTVESVTAKDPLTLVIKTNIPNPDLPLNLASVHIVSKHVGEKSTTENYNSGAAV 183 TFAGYLRTVESVTAKDPLTL+IKT IP+PDLPLNLASVHIVSKHVGEKS+TE+YN+G AV Sbjct: 122 TFAGYLRTVESVTAKDPLTLIIKTTIPSPDLPLNLASVHIVSKHVGEKSSTEDYNAGRAV 181 Query: 184 VGTGPYKFVSYTPGDRVVMQRNDNYWNGKPLWDKVNYRYINNGAARTAALLSGDVDVIDK 243 VGTGPYKFVSY PGDRVVM RNDNYW K LW+KVNYRYINN AARTA LLSG+VDVIDK Sbjct: 182 VGTGPYKFVSYVPGDRVVMARNDNYWGDKQLWEKVNYRYINNAAARTANLLSGEVDVIDK 241 Query: 244 VSVSDLAKLKQSPNVKVYPYNGLRVLLIQPSFHEGPSPFITDNNGKQLEKNPLLDVRVRR 303 VSVSDLA+L+QSPNVKV+ Y GLRV+L+QPSF +GP+ +IT N+GK L NPLLDVRVRR Sbjct: 242 VSVSDLARLRQSPNVKVFAYPGLRVMLLQPSFRKGPNDYITGNDGKPLPNNPLLDVRVRR 301 Query: 304 AMSLAINRKALIDRILQGAATEANQWMPADTFGYNPEIKNIPFDAAQAKKLLAEAGFPEG 363 A+SLAI+RKA++DRILQGAAT ANQWMP+DT+GYNP++K+I +D QAKKLLAEAGFP+G Sbjct: 302 ALSLAIDRKAIVDRILQGAATVANQWMPSDTYGYNPDVKDIAYDPVQAKKLLAEAGFPQG 361 Query: 364 FKLTLHVPNDRYPQAPETMQAVAQFWTRIGIKTQVEVLPWASYSSRANKNEFAVSVLAWG 423 F L +HVPNDRYPQ PET QAVAQFWTRIG+K++VEV+PW+ YS RANKNE+A+S+LAWG Sbjct: 362 FNLVIHVPNDRYPQGPETAQAVAQFWTRIGVKSRVEVVPWSVYSGRANKNEYAMSMLAWG 421 Query: 424 NGTGEASYALVNVLGTVDPKKGIGASNWNHYSSPAVDKALADSTAEFDAAKREAILRGAA 483 NGTGEASYALVNVL TVD KKG+GASNW HYS+ AVD AL ST EF+ KR AILR + Sbjct: 422 NGTGEASYALVNVLATVDTKKGLGASNWGHYSNAAVDNALNASTEEFNVEKRAAILRHSV 481 Query: 484 KTVSDEVGVIPLYHYQNIWAAKKGLKVTPISSDRTTAMMVTQDKK 528 K VSD+VGV+PLYHYQN+WAAKKGLKVTP++SDRT A MVT+D K Sbjct: 482 KLVSDDVGVMPLYHYQNVWAAKKGLKVTPMTSDRTAAQMVTKDGK 526 >ref|YP_001899653.1| family 5 extracellular solute-binding protein [Ralstonia pickettii 12J] gb|ACD27221.1| extracellular solute-binding protein family 5 [Ralstonia pickettii 12J] Length = 522 Score = 813 bits (2099), Expect = 0.0, Method: Composition-based stats. Identities = 397/500 (79%), Positives = 453/500 (90%) Query: 29 QNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQNDYNKLVPGLAVSWKNIDPKTWE 88 Q LNIAFADPLSSLDPQLNNHAGDRSVD+HFWDLLV+N +N+L PGLA+SW+ +DPKTWE Sbjct: 23 QTLNIAFADPLSSLDPQLNNHAGDRSVDVHFWDLLVENKWNQLQPGLALSWRTLDPKTWE 82 Query: 89 FKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLVIKTN 148 FKLRPNVKW DG+PFTADDVIFSYQRAR+VPGSVATFAGYLRTVESVTAKDPLTL+IKTN Sbjct: 83 FKLRPNVKWHDGQPFTADDVIFSYQRARSVPGSVATFAGYLRTVESVTAKDPLTLIIKTN 142 Query: 149 IPNPDLPLNLASVHIVSKHVGEKSTTENYNSGAAVVGTGPYKFVSYTPGDRVVMQRNDNY 208 IPNPDLPLNLASVHIVSKHVGEKS+TE+YN+G AVVGTGPYKFVSY PGDRVVM RNDNY Sbjct: 143 IPNPDLPLNLASVHIVSKHVGEKSSTEDYNAGRAVVGTGPYKFVSYVPGDRVVMARNDNY 202 Query: 209 WNGKPLWDKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRV 268 W GK LW+KVNYRYINN AARTA LLSG+VDVIDKVSVSDLA+L+QSPNVKV+ Y GLRV Sbjct: 203 WGGKQLWEKVNYRYINNAAARTANLLSGEVDVIDKVSVSDLARLRQSPNVKVFSYPGLRV 262 Query: 269 LLIQPSFHEGPSPFITDNNGKQLEKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQ 328 +L+QPSF +GP+ ++T N+GK L NPLLDVRVRRA+SLAI+RKA++DRILQGAAT ANQ Sbjct: 263 MLLQPSFRKGPNDYVTGNDGKPLPNNPLLDVRVRRALSLAIDRKAIVDRILQGAATVANQ 322 Query: 329 WMPADTFGYNPEIKNIPFDAAQAKKLLAEAGFPEGFKLTLHVPNDRYPQAPETMQAVAQF 388 WMP++T+GYNP++K+I +D AQAKKLLA+AGFP+GF L +HVPNDRYPQ PET QAVAQF Sbjct: 323 WMPSNTYGYNPDVKDIAYDPAQAKKLLADAGFPQGFNLVMHVPNDRYPQGPETAQAVAQF 382 Query: 389 WTRIGIKTQVEVLPWASYSSRANKNEFAVSVLAWGNGTGEASYALVNVLGTVDPKKGIGA 448 WTRIG+K +VEV+PW+ YS RANKNE+A+S+LAWGNGTGEASYALVNVL TVD KKG+GA Sbjct: 383 WTRIGVKARVEVVPWSVYSGRANKNEYAMSMLAWGNGTGEASYALVNVLATVDTKKGLGA 442 Query: 449 SNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSDEVGVIPLYHYQNIWAAKKGL 508 SNW HYS+ AVD AL ST EF+ KR AILR + K VSD+VGV+PLYHYQN+WAAKKGL Sbjct: 443 SNWGHYSNAAVDNALNASTEEFNVEKRAAILRHSVKLVSDDVGVMPLYHYQNVWAAKKGL 502 Query: 509 KVTPISSDRTTAMMVTQDKK 528 KVTP++SDRT A MVT+D K Sbjct: 503 KVTPMTSDRTAAQMVTKDGK 522 >ref|YP_004685431.1| dipeptide transport system permease DppA [Cupriavidus necator N-1] gb|AEI76950.1| dipeptide transport system permease protein DppA [Cupriavidus necator N-1] Length = 526 Score = 810 bits (2092), Expect = 0.0, Method: Composition-based stats. Identities = 395/500 (79%), Positives = 449/500 (89%) Query: 29 QNLNIAFADPLSSLDPQLNNHAGDRSVDLHFWDLLVQNDYNKLVPGLAVSWKNIDPKTWE 88 Q+L I FADPLSSLDPQLNNHAGDRSVDLHFWDLL++N NKL PGLA+SWK +D KTWE Sbjct: 27 QSLTIGFADPLSSLDPQLNNHAGDRSVDLHFWDLLIENKDNKLQPGLALSWKALDDKTWE 86 Query: 89 FKLRPNVKWQDGKPFTADDVIFSYQRARAVPGSVATFAGYLRTVESVTAKDPLTLVIKTN 148 FKLR +VKWQDGKPFTA+DV+FSYQRAR VPGSVA+F+GYLRT+ES TAKDP TL++KTN Sbjct: 87 FKLRRDVKWQDGKPFTAEDVVFSYQRARNVPGSVASFSGYLRTIESATAKDPYTLLVKTN 146 Query: 149 IPNPDLPLNLASVHIVSKHVGEKSTTENYNSGAAVVGTGPYKFVSYTPGDRVVMQRNDNY 208 I NPDLPLNLASVHIVSKHVG+K+ T++YN+G AVVGTGPYKF+SYTPGDRV+M RND Y Sbjct: 147 IANPDLPLNLASVHIVSKHVGDKANTDDYNAGRAVVGTGPYKFISYTPGDRVIMARNDGY 206 Query: 209 WNGKPLWDKVNYRYINNGAARTAALLSGDVDVIDKVSVSDLAKLKQSPNVKVYPYNGLRV 268 W K +W +VNYRYINNG ARTAALLSGDVDVIDKVSVSDLAKLKQSP V V+PYNGLRV Sbjct: 207 WGAKAIWQQVNYRYINNGPARTAALLSGDVDVIDKVSVSDLAKLKQSPTVSVFPYNGLRV 266 Query: 269 LLIQPSFHEGPSPFITDNNGKQLEKNPLLDVRVRRAMSLAINRKALIDRILQGAATEANQ 328 +L+QPSF GP+P+ITDN GK L+KNPLLDVRVRRA+SLAINR+A++ RILQ AT ANQ Sbjct: 267 MLLQPSFKPGPNPYITDNAGKPLDKNPLLDVRVRRALSLAINREAVVGRILQNTATVANQ 326 Query: 329 WMPADTFGYNPEIKNIPFDAAQAKKLLAEAGFPEGFKLTLHVPNDRYPQAPETMQAVAQF 388 WMP TFGYNPE+K+I +D AQAKKLLAEAGFP+GF+LT+H PNDRYPQ PET QAVAQF Sbjct: 327 WMPKGTFGYNPEVKDIAYDPAQAKKLLAEAGFPDGFRLTIHAPNDRYPQGPETAQAVAQF 386 Query: 389 WTRIGIKTQVEVLPWASYSSRANKNEFAVSVLAWGNGTGEASYALVNVLGTVDPKKGIGA 448 WTR+G+KTQVEV+PW+ YS RANKNE+AVS+LAWGNGTGEASYALVNVL TVD KKG+GA Sbjct: 387 WTRVGVKTQVEVVPWSVYSGRANKNEYAVSMLAWGNGTGEASYALVNVLATVDAKKGLGA 446 Query: 449 SNWNHYSSPAVDKALADSTAEFDAAKREAILRGAAKTVSDEVGVIPLYHYQNIWAAKKGL 508 SNW HYS+PAVD+AL +STAEFDAAKRE ILR + K VSD+VGV+PLYHYQNIWAAKKGL Sbjct: 447 SNWGHYSNPAVDRALEESTAEFDAAKRETILRRSVKLVSDDVGVVPLYHYQNIWAAKKGL 506 Query: 509 KVTPISSDRTTAMMVTQDKK 528 KVTP++SDRT AMMVT+ K Sbjct: 507 KVTPMTSDRTAAMMVTRTGK 526