BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.3000.p (335 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbasp... 644 0.0 ref|YP_995614.1| oligopeptide/dipeptide ABC transporter ATPase [... 504 e-141 gb|EFV84687.1| DppF protein [Achromobacter xylosoxidans C54] 482 e-134 gb|EGP43024.1| oligopeptide/dipeptide abc transporter, ATP-bindi... 482 e-134 ref|YP_003979792.1| oligopeptide/dipeptide abc transporter ATP-b... 478 e-133 >ref|YP_003774988.1| oligopeptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63080.1| ABC-type oligopeptide transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 323/335 (96%), Positives = 328/335 (97%) Query: 1 MDKAVIPLIETRAVSRRFGERHQGWLDRQLQARGWSRPPAVTHALDQVDLKVLPGEVVGL 60 MDKAVIPLIETRAVSRRFGER QGWL RQLQARGWSRPPA+THALD+VDLKVLPGEVVGL Sbjct: 1 MDKAVIPLIETRAVSRRFGERRQGWLQRQLQARGWSRPPAITHALDKVDLKVLPGEVVGL 60 Query: 61 VGESGCGKSTLGRVACGLLDPSDGQVLANGRDRTSLSSKEEAEARLQVQMIFQNPYASLN 120 VGESGCGKSTLGRVACGLLDPSDGQVL NGRDR SLSS+EEAEARLQVQMIFQNPYASLN Sbjct: 61 VGESGCGKSTLGRVACGLLDPSDGQVLVNGRDRASLSSREEAEARLQVQMIFQNPYASLN 120 Query: 121 PRLRIDQIVGEAAQVNGKVEGDLDAYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIAR 180 PRLRIDQIVGEAAQVNGKVEGDLD YVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIAR Sbjct: 121 PRLRIDQIVGEAAQVNGKVEGDLDDYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIAR 180 Query: 181 ALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREQLGLTYLFISHDLGVVEHVSDRVVI 240 ALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLR +LGLTYLFISHDLGVVEHVSDRVVI Sbjct: 181 ALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLRAELGLTYLFISHDLGVVEHVSDRVVI 240 Query: 241 MYLGRVVESAPVGELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHF 300 MYLGRVVESAPV ELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHF Sbjct: 241 MYLGRVVESAPVAELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHF 300 Query: 301 NPRCPHATQRCREEQPLLREIAPGHLSACHLNDGR 335 NPRCPHATQRCREEQPLLREIAPGH+SACHLNDGR Sbjct: 301 NPRCPHATQRCREEQPLLREIAPGHMSACHLNDGR 335 >ref|YP_995614.1| oligopeptide/dipeptide ABC transporter ATPase [Verminephrobacter eiseniae EF01-2] gb|ABM56596.1| oligopeptide/dipeptide ABC transporter, ATPase subunit [Verminephrobacter eiseniae EF01-2] Length = 346 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 257/335 (76%), Positives = 285/335 (85%), Gaps = 2/335 (0%) Query: 1 MDK-AVIPLIETRAVSRRFGERHQGWLDRQLQARGWSRPPAVTHALDQVDLKVLPGEVVG 59 MDK V+PL+E R V +RFGER L+RQL ARGW RP AVT ALD VDL V+PGEV+G Sbjct: 12 MDKDRVMPLVEVRNVGKRFGERRPRPLERQLIARGWMRPAAVTQALDAVDLHVMPGEVIG 71 Query: 60 LVGESGCGKSTLGRVACGLLDPSDGQVLANGRDRTSLSSKEEAEARLQVQMIFQNPYASL 119 LVGESGCGKSTLGR+ GLL PS GQVL +G DR++LS+++ AR +VQMIFQNPYASL Sbjct: 72 LVGESGCGKSTLGRIVSGLLAPSSGQVLLDGTDRSTLSARQVHAARRKVQMIFQNPYASL 131 Query: 120 NPRLRIDQIVGEAAQVNGKVE-GDLDAYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGI 178 NPRLR+D+IVGEAA ++G + LD YV QLLRAGLDP LRDRYPHQFSGGQRQRIGI Sbjct: 132 NPRLRVDEIVGEAALIHGMTDKAGLDDYVSAQLLRAGLDPQLRDRYPHQFSGGQRQRIGI 191 Query: 179 ARALAVQPQMLVCDEAVAALDVSIQAQILNLFMDLREQLGLTYLFISHDLGVVEHVSDRV 238 ARALAVQPQMLV DEAVAALDVSIQAQILNLF DLREQLGLTYLFISHDLGVVEHVSDRV Sbjct: 192 ARALAVQPQMLVADEAVAALDVSIQAQILNLFSDLREQLGLTYLFISHDLGVVEHVSDRV 251 Query: 239 VIMYLGRVVESAPVGELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGC 298 +IMYLGR+VESA V LF QPNHPYT+ALLA+VPR+ R K FTAI+GEIPSPLNPP GC Sbjct: 252 LIMYLGRIVESAAVAGLFAQPNHPYTRALLADVPRLHVRNKSFTAIEGEIPSPLNPPPGC 311 Query: 299 HFNPRCPHATQRCREEQPLLREIAPGHLSACHLND 333 HFNPRCPHA RCR++ P L+EIAPGHLSACHLND Sbjct: 312 HFNPRCPHAMPRCRQQTPALKEIAPGHLSACHLND 346 >gb|EFV84687.1| DppF protein [Achromobacter xylosoxidans C54] Length = 344 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 246/328 (75%), Positives = 275/328 (83%), Gaps = 1/328 (0%) Query: 7 PLIETRAVSRRFGERHQGWLDRQLQARGWSRPPAVTHALDQVDLKVLPGEVVGLVGESGC 66 PLI+ R VS+RFGER G R LQ G S+PPA+T A+D+VDL V PGEVVGLVGESGC Sbjct: 15 PLIDLRQVSKRFGERPVGAAGRALQRLGLSKPPAITRAVDRVDLLVRPGEVVGLVGESGC 74 Query: 67 GKSTLGRVACGLLDPSDGQVLANGRDRTSLSSKEEAEARLQVQMIFQNPYASLNPRLRID 126 GKSTLGR+A GLL PS G+VL NG+ ++ + ARL+VQMIFQ+PYASLNPRLR+D Sbjct: 75 GKSTLGRIAAGLLTPSGGEVLINGQRPADMTPAQAHAARLKVQMIFQDPYASLNPRLRVD 134 Query: 127 QIVGEAAQVNGKV-EGDLDAYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQ 185 +IVGEAA+++G V GD D YV QL RAGLDPALR RYPHQFSGGQRQRIGIARALAVQ Sbjct: 135 EIVGEAARIHGLVGNGDFDDYVSAQLQRAGLDPALRQRYPHQFSGGQRQRIGIARALAVQ 194 Query: 186 PQMLVCDEAVAALDVSIQAQILNLFMDLREQLGLTYLFISHDLGVVEHVSDRVVIMYLGR 245 P MLVCDEAVAALDVSIQAQILNLFMDLREQL LTYLFISHDLGVVEH+SDRVVIMYLGR Sbjct: 195 PSMLVCDEAVAALDVSIQAQILNLFMDLREQLNLTYLFISHDLGVVEHLSDRVVIMYLGR 254 Query: 246 VVESAPVGELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHFNPRCP 305 VVE+APV E+F +PNHPYTQALLAE+P + +R K FTAIKGEIPSPLNPP GCHF+PRCP Sbjct: 255 VVETAPVDEVFRRPNHPYTQALLAEIPNLKSRHKTFTAIKGEIPSPLNPPGGCHFHPRCP 314 Query: 306 HATQRCREEQPLLREIAPGHLSACHLND 333 HA RC+ E P L+ IA HLSACHLND Sbjct: 315 HAMARCKTEVPTLKGIAINHLSACHLND 342 >gb|EGP43024.1| oligopeptide/dipeptide abc transporter, ATP-binding protein, c-terminal domain-containing protein 6 [Achromobacter xylosoxidans AXX-A] Length = 370 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 247/328 (75%), Positives = 274/328 (83%), Gaps = 1/328 (0%) Query: 7 PLIETRAVSRRFGERHQGWLDRQLQARGWSRPPAVTHALDQVDLKVLPGEVVGLVGESGC 66 PLI+ R VS+RFGER G R LQ G S+PPAVT A+D VDL V PGEVVGLVGESGC Sbjct: 41 PLIDLRQVSKRFGERPVGAAGRALQRLGLSKPPAVTRAVDHVDLLVRPGEVVGLVGESGC 100 Query: 67 GKSTLGRVACGLLDPSDGQVLANGRDRTSLSSKEEAEARLQVQMIFQNPYASLNPRLRID 126 GKSTLGR+A GLL PS G+VL NG+ ++ + ARL+VQMIFQ+PYASLNPRLR+D Sbjct: 101 GKSTLGRIAAGLLTPSGGEVLINGQRPADMTPAQAHAARLKVQMIFQDPYASLNPRLRVD 160 Query: 127 QIVGEAAQVNGKV-EGDLDAYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARALAVQ 185 +IVGEAA+++G V GD D YV QL RAGLDPALR RYPHQFSGGQRQRIGIARALAVQ Sbjct: 161 EIVGEAARIHGLVGNGDFDDYVSAQLQRAGLDPALRQRYPHQFSGGQRQRIGIARALAVQ 220 Query: 186 PQMLVCDEAVAALDVSIQAQILNLFMDLREQLGLTYLFISHDLGVVEHVSDRVVIMYLGR 245 P MLVCDEAVAALDVSIQAQILNLFMDLREQL LTYLFISHDLGVVEH+SDRVVIMYLGR Sbjct: 221 PSMLVCDEAVAALDVSIQAQILNLFMDLREQLNLTYLFISHDLGVVEHLSDRVVIMYLGR 280 Query: 246 VVESAPVGELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHFNPRCP 305 VVE+APV E+F +PNHPYTQALLAE+P + +R K FTAIKGEIPSPLNPP GCHF+PRCP Sbjct: 281 VVETAPVEEVFRRPNHPYTQALLAEIPNLKSRHKTFTAIKGEIPSPLNPPGGCHFHPRCP 340 Query: 306 HATQRCREEQPLLREIAPGHLSACHLND 333 HA RC+ E P L+ IA HLSACHLND Sbjct: 341 HAMARCKTEVPTLKGIAINHLSACHLND 368 >ref|YP_003979792.1| oligopeptide/dipeptide abc transporter ATP-binding protein, c-terminal domain-containing protein 6 [Achromobacter xylosoxidans A8] gb|ADP17077.1| oligopeptide/dipeptide abc transporter, ATP-binding protein, c-terminal domain protein 6 [Achromobacter xylosoxidans A8] Length = 337 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 245/331 (74%), Positives = 271/331 (81%), Gaps = 1/331 (0%) Query: 4 AVIPLIETRAVSRRFGERHQGWLDRQLQARGWSRPPAVTHALDQVDLKVLPGEVVGLVGE 63 A PLI+ VS+RFGER G R +Q G S+PPAVT A+D VDL V PGEVVGLVGE Sbjct: 5 APTPLIDLSQVSKRFGERPSGPATRAMQRLGLSKPPAVTRAVDNVDLIVNPGEVVGLVGE 64 Query: 64 SGCGKSTLGRVACGLLDPSDGQVLANGRDRTSLSSKEEAEARLQVQMIFQNPYASLNPRL 123 SGCGKSTLGR+A GLL PS G++ NG ++S + ARLQVQMIFQ+PYASLNPRL Sbjct: 65 SGCGKSTLGRIAAGLLTPSGGEIRINGVRPADMNSAQAHAARLQVQMIFQDPYASLNPRL 124 Query: 124 RIDQIVGEAAQVNGKV-EGDLDAYVCQQLLRAGLDPALRDRYPHQFSGGQRQRIGIARAL 182 R+D+IVGEAA+++G V GD D YV QL RAGLDPALR RYPHQFSGGQRQRIGIARAL Sbjct: 125 RVDEIVGEAARIHGLVGNGDFDDYVSAQLERAGLDPALRQRYPHQFSGGQRQRIGIARAL 184 Query: 183 AVQPQMLVCDEAVAALDVSIQAQILNLFMDLREQLGLTYLFISHDLGVVEHVSDRVVIMY 242 AVQP MLVCDEAVAALDVSIQAQILNLFMDLRE LGLTYLFISHDLGVVEH+SDRVVIMY Sbjct: 185 AVQPTMLVCDEAVAALDVSIQAQILNLFMDLREDLGLTYLFISHDLGVVEHLSDRVVIMY 244 Query: 243 LGRVVESAPVGELFGQPNHPYTQALLAEVPRMGARKKEFTAIKGEIPSPLNPPTGCHFNP 302 LGRVVE+A V E+F PNHPYTQALLAE+P + +R K FTAIKGEIPSPLNPP GCHF+P Sbjct: 245 LGRVVETATVEEVFRHPNHPYTQALLAEIPSLKSRHKTFTAIKGEIPSPLNPPGGCHFHP 304 Query: 303 RCPHATQRCREEQPLLREIAPGHLSACHLND 333 RCPHA RC+ E P L+ IA HLSACHLND Sbjct: 305 RCPHAMPRCKTEVPTLKGIAINHLSACHLND 335