BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2999.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporte...   195   2e-48
ref|YP_995613.1| oligopeptide/dipeptide ABC transporter ATPase [...   149   1e-34
ref|YP_003979791.1| oligopeptide transport ATP-binding protein O...   136   8e-31
ref|ZP_06688336.1| oligopeptide ABC superfamily ATP binding cass...   134   5e-30
ref|YP_001899651.1| oligopeptide/dipeptide ABC transporter ATPas...   132   2e-29

>ref|YP_003774987.1| dipeptide/oligopeptide/nickel ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63079.1| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase
           component protein [Herbaspirillum seropedicae SmR1]
          Length = 330

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/102 (93%), Positives = 98/102 (96%)

Query: 1   MYAGRIVEQGAVAGLLDRPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF 60
           MYAGRIVEQG+V  +LD PLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF
Sbjct: 229 MYAGRIVEQGSVDAVLDAPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF 288

Query: 61  AARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQSNEHHG 102
           AARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQS+E HG
Sbjct: 289 AARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQSSEQHG 330


>ref|YP_995613.1| oligopeptide/dipeptide ABC transporter ATPase [Verminephrobacter
           eiseniae EF01-2]
 gb|ABM56595.1| oligopeptide/dipeptide ABC transporter, ATPase subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 339

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 84/106 (79%), Gaps = 4/106 (3%)

Query: 1   MYAGRIVEQGAVAGLLDRPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF 60
           MY GRIVEQG V+ +LD+PLHPYTQGLIGSLPSNNRRG RL QIPG+TPNLLHLPPTCAF
Sbjct: 233 MYCGRIVEQGKVSAVLDQPLHPYTQGLIGSLPSNNRRGQRLCQIPGLTPNLLHLPPTCAF 292

Query: 61  AARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQSNE----HHG 102
           AARCER+S+QCL  P  +EPL AH VRC+HP     +      HHG
Sbjct: 293 AARCERVSEQCLARPETTEPLNAHFVRCFHPAAPPGAGHAMELHHG 338


>ref|YP_003979791.1| oligopeptide transport ATP-binding protein OppD [Achromobacter
           xylosoxidans A8]
 gb|ADP17076.1| oligopeptide transport ATP-binding protein OppD [Achromobacter
           xylosoxidans A8]
          Length = 335

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/95 (69%), Positives = 73/95 (76%)

Query: 1   MYAGRIVEQGAVAGLLDRPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF 60
           MYAGRIVE G V  +LDRP HPYT GLI SLPSNNRRG RLRQIPGMTPNLL+LP  CAF
Sbjct: 236 MYAGRIVEHGTVDDVLDRPQHPYTVGLIDSLPSNNRRGQRLRQIPGMTPNLLNLPAGCAF 295

Query: 61  AARCERLSQQCLVAPAISEPLPAHRVRCYHPTPST 95
           AARC R +  C   P I++ LP H+VRC+HPT  T
Sbjct: 296 AARCSRATAACDQQPGITQALPEHKVRCFHPTIQT 330


>ref|ZP_06688336.1| oligopeptide ABC superfamily ATP binding cassette transporter, ABC
           protein [Achromobacter piechaudii ATCC 43553]
 gb|EFF74756.1| oligopeptide ABC superfamily ATP binding cassette transporter, ABC
           protein [Achromobacter piechaudii ATCC 43553]
          Length = 336

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/92 (69%), Positives = 71/92 (77%)

Query: 1   MYAGRIVEQGAVAGLLDRPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF 60
           MYAGRIVE G V  +LDRP HPYT GLI SLPSNN+RG RLRQIPGMTPNLLHLP  CAF
Sbjct: 236 MYAGRIVEHGKVDDVLDRPQHPYTVGLIDSLPSNNQRGQRLRQIPGMTPNLLHLPAGCAF 295

Query: 61  AARCERLSQQCLVAPAISEPLPAHRVRCYHPT 92
           +ARC R +  C   P I++ LP H VRC+HPT
Sbjct: 296 SARCSRATAACGQQPGITQALPEHDVRCFHPT 327


>ref|YP_001899651.1| oligopeptide/dipeptide ABC transporter ATPase [Ralstonia pickettii
           12J]
 gb|ACD27219.1| oligopeptide/dipeptide ABC transporter, ATPase subunit [Ralstonia
           pickettii 12J]
          Length = 334

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/98 (68%), Positives = 72/98 (73%)

Query: 1   MYAGRIVEQGAVAGLLDRPLHPYTQGLIGSLPSNNRRGARLRQIPGMTPNLLHLPPTCAF 60
           MYAGRIVE G V  +LD PLHPYT GLI SLPS NRRG RLRQIPGMTPNLL LP  CAF
Sbjct: 233 MYAGRIVEHGPVDAVLDAPLHPYTMGLIDSLPSENRRGQRLRQIPGMTPNLLSLPAGCAF 292

Query: 61  AARCERLSQQCLVAPAISEPLPAHRVRCYHPTPSTQSN 98
           AARC R S  C VAP I++PLP   VRC+HP     S+
Sbjct: 293 AARCPRASDVCGVAPEITQPLPGRLVRCFHPGAQRASS 330