BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2997.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774986.1| dipeptide/oligopeptide/nickel ABC transporte... 562 e-158 ref|YP_995612.1| binding-protein-dependent transport systems inn... 486 e-135 gb|EFV84689.1| ABC transporter [Achromobacter xylosoxidans C54] 451 e-125 ref|YP_002981715.1| binding-protein-dependent transport systems ... 444 e-122 ref|ZP_07677134.1| peptide ABC transporter, permease protein [Ra... 443 e-122 >ref|YP_003774986.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63078.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 315/320 (98%), Positives = 318/320 (99%) Query: 1 MSAPQTEVTMTQEQVRARVAELSAFQAPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVG 60 MSAPQTEV MTQEQVRARVAELSAFQAPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVG Sbjct: 1 MSAPQTEVGMTQEQVRARVAELSAFQAPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVG 60 Query: 61 AIAAPWITPQNPYDLMQLDVLDARLHPGTPNGAGTFTYWLGTDGQGRDLVSAILYGLRIS 120 AIAAPWITPQNPYDLMQLDVLDARLHPGT NGAGT+TYWLGTDGQGRDLVSAILYGLRIS Sbjct: 61 AIAAPWITPQNPYDLMQLDVLDARLHPGTLNGAGTYTYWLGTDGQGRDLVSAILYGLRIS 120 Query: 121 VGIGVGSALIAGVIGTLIGLLAAYAGGKVDTVLMRFADLVLSFPSILVAMLILAYVGKGI 180 VGIGVGSALIAGVIGTLIGLLAAYAGGK+DT+LMRFADLVLSFPSILVAMLILAYVGKGI Sbjct: 121 VGIGVGSALIAGVIGTLIGLLAAYAGGKLDTLLMRFADLVLSFPSILVAMLILAYVGKGI 180 Query: 181 FNVMATLVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIV 240 FNVMATLVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIV Sbjct: 181 FNVMATLVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIV 240 Query: 241 IGTLQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLVVI 300 IGTLQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLVVI Sbjct: 241 IGTLQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLVVI 300 Query: 301 VAINLVGDRLRDILNPRWQK 320 VAINLVGDRLRDILNPRWQK Sbjct: 301 VAINLVGDRLRDILNPRWQK 320 >ref|YP_995612.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM56594.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 334 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 261/311 (83%), Positives = 285/311 (91%) Query: 10 MTQEQVRARVAELSAFQAPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVGAIAAPWITP 69 MTQ++VRA+VA LSAFQ PRRESPWRRV R F+AS++A+ GL + LL+V A+ APW+TP Sbjct: 24 MTQQEVRAKVAALSAFQTPRRESPWRRVARDFLASKTAIFGLAVAALLMVAALTAPWLTP 83 Query: 70 QNPYDLMQLDVLDARLHPGTPNGAGTFTYWLGTDGQGRDLVSAILYGLRISVGIGVGSAL 129 QNPYDLMQLDVLDARL PG+ NG GT+ YWLGTDGQGRDL S ILYGLRISVGIGVGSAL Sbjct: 84 QNPYDLMQLDVLDARLPPGSANGLGTYRYWLGTDGQGRDLYSGILYGLRISVGIGVGSAL 143 Query: 130 IAGVIGTLIGLLAAYAGGKVDTVLMRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVV 189 +AGVIGTL GLLAAY GGK D +LMR ADLVLSFP+ILV+MLILAY+GKGIFNVMA LVV Sbjct: 144 LAGVIGTLAGLLAAYLGGKADALLMRLADLVLSFPAILVSMLILAYLGKGIFNVMAALVV 203 Query: 190 LEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARA 249 LEWAYYARTARGQALVER KEYVEAARGL +S WRIMVRHILPNCLPPLIVIGTLQ+ARA Sbjct: 204 LEWAYYARTARGQALVERHKEYVEAARGLGVSGWRIMVRHILPNCLPPLIVIGTLQIARA 263 Query: 250 ITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLVVIVAINLVGDR 309 ITLEATLSFLGLGVPITEPSLGLLI+NGYQYMLSGEYWISFYPGI LLVVIVAINLVGDR Sbjct: 264 ITLEATLSFLGLGVPITEPSLGLLIANGYQYMLSGEYWISFYPGIALLVVIVAINLVGDR 323 Query: 310 LRDILNPRWQK 320 LRD++NPRWQ+ Sbjct: 324 LRDVMNPRWQR 334 >gb|EFV84689.1| ABC transporter [Achromobacter xylosoxidans C54] Length = 314 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 240/320 (75%), Positives = 275/320 (85%), Gaps = 6/320 (1%) Query: 1 MSAPQTEVTMTQEQVRARVAELSAFQAPRRESPWRRVMRHFVASRSAMLGLVIVLLLIVG 60 MSAP T Q A A A +RESPWRR + F++S++A+ GLVI LLI+ Sbjct: 1 MSAPNTP------QANAMQNATPAAPALKRESPWRRNLLEFLSSKTAVFGLVIATLLILA 54 Query: 61 AIAAPWITPQNPYDLMQLDVLDARLHPGTPNGAGTFTYWLGTDGQGRDLVSAILYGLRIS 120 AI APWI+PQNPYDL+Q+DVLDARL PGT NG TF YWLGTDGQGRDL+S ILYGLRIS Sbjct: 55 AILAPWISPQNPYDLLQIDVLDARLAPGTMNGLNTFHYWLGTDGQGRDLLSGILYGLRIS 114 Query: 121 VGIGVGSALIAGVIGTLIGLLAAYAGGKVDTVLMRFADLVLSFPSILVAMLILAYVGKGI 180 + +GVGSALIAG+IGTL+GLLAAYAGGKVD ++MR DL+LSFPSILVAM+ILAY+GKG+ Sbjct: 115 LMVGVGSALIAGIIGTLLGLLAAYAGGKVDALIMRLVDLILSFPSILVAMMILAYLGKGV 174 Query: 181 FNVMATLVVLEWAYYARTARGQALVERRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIV 240 NV+ TLV+LEWAYYARTARGQALVERR+EYVEAAR L++ +WRIM++HILPNCLPPLIV Sbjct: 175 GNVVLTLVILEWAYYARTARGQALVERRREYVEAARCLDIPNWRIMLKHILPNCLPPLIV 234 Query: 241 IGTLQVARAITLEATLSFLGLGVPITEPSLGLLISNGYQYMLSGEYWISFYPGITLLVVI 300 IGTLQ+ARAITLEATLSFLGLGVP+TEPSLGLLISNG+QYMLSGEYWISFYPGI LL+ I Sbjct: 235 IGTLQIARAITLEATLSFLGLGVPVTEPSLGLLISNGFQYMLSGEYWISFYPGIALLITI 294 Query: 301 VAINLVGDRLRDILNPRWQK 320 VAINLVGDRLRD+LNPR K Sbjct: 295 VAINLVGDRLRDVLNPRTHK 314 >ref|YP_002981715.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] gb|ACS63043.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] Length = 309 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 229/294 (77%), Positives = 269/294 (91%) Query: 27 APRRESPWRRVMRHFVASRSAMLGLVIVLLLIVGAIAAPWITPQNPYDLMQLDVLDARLH 86 APR++SPWRRV+ F+AS++A+ GL +V++L++ A+AAPWITPQNPYDLMQLDVLD+RL Sbjct: 16 APRKQSPWRRVVSDFLASKTAVFGLAVVVILMLAALAAPWITPQNPYDLMQLDVLDSRLP 75 Query: 87 PGTPNGAGTFTYWLGTDGQGRDLVSAILYGLRISVGIGVGSALIAGVIGTLIGLLAAYAG 146 PG+PNG GTFTYWLGTDGQGRDL S ILYGLRIS+G+G+GSA +A VIGTL+GL+AAYAG Sbjct: 76 PGSPNGLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVAAVIGTLLGLIAAYAG 135 Query: 147 GKVDTVLMRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVVLEWAYYARTARGQALVE 206 G+VD+++MR DL+LSFPS+LVAM+ILAY+GK I NV+ TLV+LEWAYYART RGQALVE Sbjct: 136 GRVDSIIMRTVDLLLSFPSVLVAMMILAYLGKSITNVVLTLVLLEWAYYARTVRGQALVE 195 Query: 207 RRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPIT 266 RR+EYVEAAR L L WRI +RHILPNCLPPLIV+GTLQVARAITLEATLSFLGLGVPIT Sbjct: 196 RRREYVEAARSLALPGWRIALRHILPNCLPPLIVVGTLQVARAITLEATLSFLGLGVPIT 255 Query: 267 EPSLGLLISNGYQYMLSGEYWISFYPGITLLVVIVAINLVGDRLRDILNPRWQK 320 EPSLGLLISNGYQYMLSG+YWISFYPGI LL+ +VAINLVGDRLR++LNPR Q+ Sbjct: 256 EPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLREVLNPRTQR 309 >ref|ZP_07677134.1| peptide ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP64420.1| peptide ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 309 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 229/294 (77%), Positives = 269/294 (91%) Query: 27 APRRESPWRRVMRHFVASRSAMLGLVIVLLLIVGAIAAPWITPQNPYDLMQLDVLDARLH 86 APR++SPWRRV+ F+AS++A+ GL +V++L++ A+AAPWITPQNPYDLMQLDVLD+RL Sbjct: 16 APRKQSPWRRVVSDFLASKTAVFGLAVVVILMLAALAAPWITPQNPYDLMQLDVLDSRLP 75 Query: 87 PGTPNGAGTFTYWLGTDGQGRDLVSAILYGLRISVGIGVGSALIAGVIGTLIGLLAAYAG 146 PG+PNG GTFTYWLGTDGQGRDL S ILYGLRIS+G+G+GSA +A VIGTL+GL+AAYAG Sbjct: 76 PGSPNGLGTFTYWLGTDGQGRDLYSGILYGLRISLGVGIGSAAVAAVIGTLLGLIAAYAG 135 Query: 147 GKVDTVLMRFADLVLSFPSILVAMLILAYVGKGIFNVMATLVVLEWAYYARTARGQALVE 206 G+VD+++MR DL+LSFPS+LVAM+ILAY+GK I NV+ TLV+LEWAYYART RGQALVE Sbjct: 136 GRVDSIIMRTVDLLLSFPSVLVAMMILAYLGKSITNVVLTLVLLEWAYYARTVRGQALVE 195 Query: 207 RRKEYVEAARGLNLSSWRIMVRHILPNCLPPLIVIGTLQVARAITLEATLSFLGLGVPIT 266 RR+EYVEAAR L L WRI +RHILPNCLPPLIV+GTLQVARAITLEATLSFLGLGVPIT Sbjct: 196 RRREYVEAARSLALPGWRIALRHILPNCLPPLIVVGTLQVARAITLEATLSFLGLGVPIT 255 Query: 267 EPSLGLLISNGYQYMLSGEYWISFYPGITLLVVIVAINLVGDRLRDILNPRWQK 320 EPSLGLLISNGYQYMLSG+YWISFYPGI LL+ +VAINLVGDRLR++LNPR Q+ Sbjct: 256 EPSLGLLISNGYQYMLSGQYWISFYPGIALLLALVAINLVGDRLREVLNPRTQR 309