BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2996.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774985.1| dipeptide/oligopeptide/nickel ABC transporte... 545 e-153 ref|YP_995611.1| binding-protein-dependent transport systems inn... 501 e-140 ref|YP_002981714.1| binding-protein-dependent transport systems ... 463 e-128 ref|ZP_07677135.1| peptide ABC transporter, permease protein [Ra... 463 e-128 ref|YP_004389393.1| ABC transporter integral membrane subunit [A... 441 e-121 >ref|YP_003774985.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63077.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 316/323 (97%), Positives = 321/323 (99%) Query: 1 MSGAIAKSVLQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIKELGLDQPV 60 MSGAIA+SV+QALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRII+ELGLDQPV Sbjct: 1 MSGAIARSVVQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIQELGLDQPV 60 Query: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELAVAALLLALAVGVPLGLFAG 120 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELA AALLLAL VGVPLGLFAG Sbjct: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELACAALLLALVVGVPLGLFAG 120 Query: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL Sbjct: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 Query: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDYVKFARAKGLSPARVVLMYVLR 240 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMD+VKFARAKGLSPARVVLMYVLR Sbjct: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLSPARVVLMYVLR 240 Query: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF Sbjct: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 Query: 301 VTINLVVDVLYKLLDPRVRVEAR 323 VTINLVVDVLYKLLDPRVRVEA+ Sbjct: 301 VTINLVVDVLYKLLDPRVRVEAK 323 >ref|YP_995611.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM56593.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 324 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 280/324 (86%), Positives = 304/324 (93%) Query: 1 MSGAIAKSVLQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIKELGLDQPV 60 MSGAI +SVLQAL V+L MTVIVFFGLHMIGNPVDILIGQDVDQ+DRLRII ELGLDQP+ Sbjct: 1 MSGAILRSVLQALAVLLAMTVIVFFGLHMIGNPVDILIGQDVDQIDRLRIIGELGLDQPI 60 Query: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELAVAALLLALAVGVPLGLFAG 120 WRQYLAFL+GALHGNLGNSFVYN PAI LIFQRLPATLELA AAL+LA+ +G+PLGLFAG Sbjct: 61 WRQYLAFLDGALHGNLGNSFVYNEPAIKLIFQRLPATLELAFAALILAVLIGIPLGLFAG 120 Query: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 + P+ FSR+VMT SI GFSLPTFWIGLMLIM FSV+LGWLPSGGRGQTA LFGVQWSWL Sbjct: 121 LFPESIFSRIVMTGSILGFSLPTFWIGLMLIMTFSVSLGWLPSGGRGQTAGLFGVQWSWL 180 Query: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDYVKFARAKGLSPARVVLMYVLR 240 TADG RH+ILPA+NLSLFKISLVIRLTRANVREVLPMD+VKFARAKGL+P RVVLMYVLR Sbjct: 181 TADGLRHLILPALNLSLFKISLVIRLTRANVREVLPMDFVKFARAKGLAPLRVVLMYVLR 240 Query: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 NTLIPLVT+VGLE GSTIAFAVVTESIFAWPG+GKLILDSINALDRPVIVAY+MVIVC+F Sbjct: 241 NTLIPLVTIVGLELGSTIAFAVVTESIFAWPGSGKLILDSINALDRPVIVAYMMVIVCLF 300 Query: 301 VTINLVVDVLYKLLDPRVRVEARA 324 V +NL+VDVLYKLLDPRVRVE +A Sbjct: 301 VALNLMVDVLYKLLDPRVRVEVKA 324 >ref|YP_002981714.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] gb|ACS63042.1| binding-protein-dependent transport systems inner membrane component [Ralstonia pickettii 12D] Length = 327 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 249/324 (76%), Positives = 291/324 (89%) Query: 1 MSGAIAKSVLQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIKELGLDQPV 60 M+G + + + QAL+VVL+MTVIVF GLH IGNPVDILIGQDVDQ+DR RII ELGLD+P+ Sbjct: 1 MTGWLIRRIGQALLVVLVMTVIVFIGLHAIGNPVDILIGQDVDQIDRARIIAELGLDKPL 60 Query: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELAVAALLLALAVGVPLGLFAG 120 W QYLAFLNGALHGNLG SFVYN PAI LI QRLPATLELA +AL++A+ +GVPLGLFAG Sbjct: 61 WEQYLAFLNGALHGNLGKSFVYNEPAIQLILQRLPATLELAFSALIIAVVIGVPLGLFAG 120 Query: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 + P HP SRL+MT S+ GFSLPTFW+GLMLIMAFSV+LGWLP+ GRG+TA LFG++WSWL Sbjct: 121 LYPRHPVSRLLMTGSVVGFSLPTFWVGLMLIMAFSVSLGWLPASGRGETARLFGIEWSWL 180 Query: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDYVKFARAKGLSPARVVLMYVLR 240 T DG RH++LPA+NLSLFK+SLV+RLT A VREVLP+D+VKFARAKGLSP RVVL +VLR Sbjct: 181 TVDGLRHLVLPAVNLSLFKLSLVLRLTSAGVREVLPLDFVKFARAKGLSPLRVVLAHVLR 240 Query: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 NTLIPLVTV+GLE GSTIAFAVVTESIFAWPGAGKLILDSIN+LDRPVIV+YL+V+VC+F Sbjct: 241 NTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKLILDSINSLDRPVIVSYLIVVVCLF 300 Query: 301 VTINLVVDVLYKLLDPRVRVEARA 324 V++NL+VD+LY+LLDPRVR A Sbjct: 301 VSLNLIVDILYRLLDPRVRAADSA 324 >ref|ZP_07677135.1| peptide ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] gb|EFP64421.1| peptide ABC transporter, permease protein [Ralstonia sp. 5_7_47FAA] Length = 327 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 249/324 (76%), Positives = 291/324 (89%) Query: 1 MSGAIAKSVLQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIKELGLDQPV 60 M+G + + + QAL+VVL+MTVIVF GLH IGNPVDILIGQDVDQ+DR RII ELGLD+P+ Sbjct: 1 MTGWLLRRIGQALLVVLVMTVIVFIGLHAIGNPVDILIGQDVDQIDRARIIAELGLDKPL 60 Query: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELAVAALLLALAVGVPLGLFAG 120 W QYLAFLNGALHGNLG SFVYN PAI LI QRLPATLELA +AL++A+ +GVPLGLFAG Sbjct: 61 WEQYLAFLNGALHGNLGKSFVYNEPAIQLILQRLPATLELAFSALIIAVVIGVPLGLFAG 120 Query: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 + P HP SRL+MT S+ GFSLPTFW+GLMLIMAFSV+LGWLP+ GRG+TA LFG++WSWL Sbjct: 121 LYPRHPVSRLLMTGSVVGFSLPTFWVGLMLIMAFSVSLGWLPASGRGETARLFGIEWSWL 180 Query: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDYVKFARAKGLSPARVVLMYVLR 240 T DG RH++LPA+NLSLFK+SLV+RLT A VREVLP+D+VKFARAKGLSP RVVL +VLR Sbjct: 181 TVDGLRHLVLPAVNLSLFKLSLVLRLTSAGVREVLPLDFVKFARAKGLSPLRVVLAHVLR 240 Query: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 NTLIPLVTV+GLE GSTIAFAVVTESIFAWPGAGKLILDSIN+LDRPVIV+YL+V+VC+F Sbjct: 241 NTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKLILDSINSLDRPVIVSYLIVVVCLF 300 Query: 301 VTINLVVDVLYKLLDPRVRVEARA 324 V++NL+VD+LY+LLDPRVR A Sbjct: 301 VSLNLIVDILYRLLDPRVRAADSA 324 >ref|YP_004389393.1| ABC transporter integral membrane subunit [Alicycliphilus denitrificans K601] gb|AEB85877.1| ABC-type transporter, integral membrane subunit [Alicycliphilus denitrificans K601] Length = 324 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 254/324 (78%), Positives = 293/324 (90%) Query: 1 MSGAIAKSVLQALMVVLLMTVIVFFGLHMIGNPVDILIGQDVDQVDRLRIIKELGLDQPV 60 M+G + + + QA +VV+LMT+IVF GLH IGNPVDILIGQDVDQV+R RII ELGLDQP+ Sbjct: 1 MTGWLLRRLAQAAVVVVLMTIIVFAGLHAIGNPVDILIGQDVDQVERARIIAELGLDQPL 60 Query: 61 WRQYLAFLNGALHGNLGNSFVYNTPAILLIFQRLPATLELAVAALLLALAVGVPLGLFAG 120 WRQYLAF+NGALHGNLG SFVYN PA+ LI QRLPATLELA+AALL+A+AVGVPLGLFAG Sbjct: 61 WRQYLAFVNGALHGNLGTSFVYNVPAVTLILQRLPATLELAIAALLIAVAVGVPLGLFAG 120 Query: 121 MKPDHPFSRLVMTTSIFGFSLPTFWIGLMLIMAFSVTLGWLPSGGRGQTAELFGVQWSWL 180 + P+HP S+L+M SI GFSLPTFW+GLMLIMAFSV LGWLP+ GRG+T +L G QWSW Sbjct: 121 LFPEHPLSKLLMAGSIVGFSLPTFWVGLMLIMAFSVGLGWLPASGRGETVQLLGAQWSWP 180 Query: 181 TADGWRHMILPAINLSLFKISLVIRLTRANVREVLPMDYVKFARAKGLSPARVVLMYVLR 240 T DG RH++LPAINLSLFK SLV+RLTRANVREV+PM++VKFARAKGLSP RVVL++VLR Sbjct: 181 TLDGLRHLLLPAINLSLFKTSLVMRLTRANVREVMPMEFVKFARAKGLSPMRVVLVHVLR 240 Query: 241 NTLIPLVTVVGLEFGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLMVIVCMF 300 NTLIPLVTV+GLE GSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYL+V+VC+F Sbjct: 241 NTLIPLVTVLGLELGSTIAFAVVTESIFAWPGAGKLILDSINALDRPVIVAYLVVVVCLF 300 Query: 301 VTINLVVDVLYKLLDPRVRVEARA 324 VT+NL+VD+LYK+LDPRVR+E A Sbjct: 301 VTLNLIVDILYKVLDPRVRLEGAA 324