BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2995.p (490 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774984.1| transmembrane oxidoreductase [Herbaspirillum... 915 0.0 ref|YP_995610.1| FAD dependent oxidoreductase [Verminephrobacter... 665 0.0 ref|YP_786088.1| monooxygenase [Bordetella avium 197N] >gi|11542... 654 0.0 ref|YP_002005528.1| flavoprotein involved in k+ transport, cog20... 646 0.0 ref|ZP_06688333.1| conserved hypothetical protein [Achromobacter... 639 0.0 >ref|YP_003774984.1| transmembrane oxidoreductase [Herbaspirillum seropedicae SmR1] gb|ADJ63076.1| transmembrane oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 496 Score = 915 bits (2366), Expect = 0.0, Method: Composition-based stats. Identities = 460/496 (92%), Positives = 478/496 (96%), Gaps = 6/496 (1%) Query: 1 MHDTEPTLIPV------APPQGLAALEARVRQDLQWLALPGKSWTPAIERDGVPVIDVAI 54 M DTEPT APPQGLAALEAR+RQDLQWLALPGKSWTP IER+GVPV+DVAI Sbjct: 1 MQDTEPTPTDATCATYAAPPQGLAALEARLRQDLQWLALPGKSWTPQIEREGVPVLDVAI 60 Query: 55 IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL 114 IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL Sbjct: 61 IGGGQAGMAASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPAL 120 Query: 115 TFRAWFESQFGLDAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL 174 TFRAWFE+QFGL AWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL Sbjct: 121 TFRAWFEAQFGLAAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVAL 180 Query: 175 QLQSPAGTSTVLARRVVVATGRDGLGGAFLPPLAAQLPRDRWAHSSDLFDYASLKGKRVG 234 QLQSP+G +TVLARRVVVATGRDGLGGA+LPPLA QLPRDRWAHSSDLFDYASLKGKRVG Sbjct: 181 QLQSPSGAATVLARRVVVATGRDGLGGAYLPPLAGQLPRDRWAHSSDLFDYASLKGKRVG 240 Query: 235 VIGGGASAMDSAATALEEGAARVDLLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR 294 VIGGGASAMDSAATALEEGAARVD+LIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR Sbjct: 241 VIGGGASAMDSAATALEEGAARVDMLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWR 300 Query: 295 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIQSVEVKPDGTLLLQTNRGPLELDFLF 354 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAI+SV+++PDG LLL TNRGPLELDFLF Sbjct: 301 IRHYVNAQQVPPPSGSTRRVSRFANARFLLGTAIESVQIQPDGALLLHTNRGPLELDFLF 360 Query: 355 FSTGFKIDWSLRSEFKDIAPHVLNWSDRFTPPAGEEDQELADSPYLGPVFEFQQKTPGSL 414 FSTGFKIDWSLR EF+DIAPH+LNWSDR+TPPAGEEDQELADSPYLGPVFEFQQKTPGSL Sbjct: 361 FSTGFKIDWSLRREFRDIAPHILNWSDRYTPPAGEEDQELADSPYLGPVFEFQQKTPGSL 420 Query: 415 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDIDYHYRNIQSYEEP 474 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSED++YHYRNIQ+YEEP Sbjct: 421 PGLERVHCFCYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDVEYHYRNIQAYEEP 480 Query: 475 ELEGDEWTESPWELPA 490 ELEGDEWTESPWELPA Sbjct: 481 ELEGDEWTESPWELPA 496 >ref|YP_995610.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2] gb|ABM56592.1| FAD dependent oxidoreductase [Verminephrobacter eiseniae EF01-2] Length = 504 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 342/473 (72%), Positives = 383/473 (80%), Gaps = 1/473 (0%) Query: 12 APPQGLAALEARVRQDLQWLALPGKSWTPAIERDGVPVIDVAIIGGGQAGMAASVALSHL 71 AP LAALEAR +QDL WL LP K W P +G V+DVA+IGGGQAGMAA+ +L HL Sbjct: 21 APTTALAALEARFQQDLAWLELPAKPWVPPKIVNGRAVLDVAVIGGGQAGMAAAASLLHL 80 Query: 72 GIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPALTFRAWFESQFGLDAWEA 131 GI VIYDQSP FEGPWATTARMETLRSPK LTGPALGF ALTFRAWFE+QFGL AWEA Sbjct: 81 GIDAVIYDQSPAGFEGPWATTARMETLRSPKKLTGPALGFAALTFRAWFEAQFGLQAWEA 140 Query: 132 LDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVALQLQSPAGTSTVLARRVV 191 LDKIPRLQWMDYLRW+R+V+ LDIRN+HR+ A+ PRADG+V L + +PAG S VLARRVV Sbjct: 141 LDKIPRLQWMDYLRWYRKVLALDIRNDHRIDAILPRADGVVELHIGAPAGRSVVLARRVV 200 Query: 192 VATGRDGLGGAFLPPLAAQLPRDRWAHSSDLFDYASLKGKRVGVIGGGASAMDSAATALE 251 +ATGRDGLGGA+LPPLA LP+ WAHS D DY L GKRVGVIG GASAMDSAATALE Sbjct: 201 LATGRDGLGGAYLPPLAQNLPQAWWAHSCDDMDYGKLAGKRVGVIGAGASAMDSAATALE 260 Query: 252 EGAARVDLLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWRIRHYVNAQQVPPPSGST 311 GA RVDLLIRR PRINKGKG+G+PGL NGH+ LPDEWKWRIRHY+N QQ PPPSGS Sbjct: 261 AGAERVDLLIRRAQFPRINKGKGAGNPGLTNGHVDLPDEWKWRIRHYINVQQTPPPSGSV 320 Query: 312 RRVSRFANARFLLGTAIQSVEVKPDGTLLLQTNRGPLELDFLFFSTGFKIDWSLRSEFKD 371 +RV++FANARFL G AI V+V D +L + T RG E DFL FSTGF+IDWS R EF Sbjct: 321 QRVAKFANARFLFGAAIDKVDVV-DDSLRVTTPRGLFEFDFLIFSTGFRIDWSARPEFAA 379 Query: 372 IAPHVLNWSDRFTPPAGEEDQELADSPYLGPVFEFQQKTPGSLPGLERVHCFCYPAAASH 431 IAPH+ NW R+ PP G+ED EL+DSP LG FEFQQK PG LPGLERVHCFCYPAA +H Sbjct: 380 IAPHIRNWRARYMPPIGDEDMELSDSPDLGAAFEFQQKHPGGLPGLERVHCFCYPAALAH 439 Query: 432 GTVSGDIPAISDGAYRLAQGIAALMYSEDIDYHYRNIQSYEEPELEGDEWTES 484 GTVSGDIPA+SDGA RLAQGIA+L+Y ED+ HY+NIQ+Y EPEL GDEWT S Sbjct: 440 GTVSGDIPALSDGARRLAQGIASLLYCEDVGMHYKNIQAYAEPELAGDEWTPS 492 >ref|YP_786088.1| monooxygenase [Bordetella avium 197N] emb|CAJ49176.1| putative monooxygenase [Bordetella avium 197N] Length = 485 Score = 654 bits (1687), Expect = 0.0, Method: Composition-based stats. Identities = 328/477 (68%), Positives = 382/477 (80%), Gaps = 2/477 (0%) Query: 10 PVA-PPQGLAALEARVRQDLQWLALPGKSWTPAIERDGVPVIDVAIIGGGQAGMAASVAL 68 P+A PP GL LEAR+RQDL WL LP ++W PA E DG PV +V IIG G AG+AA AL Sbjct: 4 PIAHPPLGLTELEARLRQDLAWLELPARAWVPAREADGQPVQEVVIIGAGMAGLAACAAL 63 Query: 69 SHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPALTFRAWFESQFGLDA 128 HLG+ V D+SP+ +EGPWATTARMETLRSPK LTGPALG PALTFRAWFE+QFGL A Sbjct: 64 KHLGVHAVCLDRSPQGYEGPWATTARMETLRSPKQLTGPALGLPALTFRAWFEAQFGLAA 123 Query: 129 WEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVALQLQSPAGTSTVLAR 188 WEALDKIPRLQWMDYLRW+R+V++LD+RNEHRVLA++PR DG+VAL +QSPA T +LAR Sbjct: 124 WEALDKIPRLQWMDYLRWYRQVLELDVRNEHRVLALRPRGDGVVALTVQSPASTQPLLAR 183 Query: 189 RVVVATGRDGLGGAFLPPLAAQLPRDRWAHSSDLFDYASLKGKRVGVIGGGASAMDSAAT 248 RVVVATGRDGLGG LP A LPRD WAHSSD DY +L GKRV VIG GASAMDSAAT Sbjct: 184 RVVVATGRDGLGGPSLPAFAQALPRDGWAHSSDEMDYGTLAGKRVAVIGAGASAMDSAAT 243 Query: 249 ALEEGAARVDLLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWRIRHYVNAQQVPPPS 308 ALE GAA VDLLIRR D+PRINKGKG+G+PGL +GHL+LP+EWKWR RHY+NAQQVPPP Sbjct: 244 ALESGAASVDLLIRRDDIPRINKGKGAGNPGLTHGHLNLPEEWKWRFRHYINAQQVPPPR 303 Query: 309 GSTRRVSRFANARFLLGTAIQSVEVKPDGTLLLQTNRGPLELDFLFFSTGFKIDWSLRSE 368 GST RVSR ANARF LG I V+ + +G + L T +G +DF+ FSTGFK+DW R E Sbjct: 304 GSTLRVSRHANARFNLGCPILDVQWQ-NGEIALTTPKGVFRVDFVIFSTGFKLDWQARPE 362 Query: 369 FKDIAPHVLNWSDRFTPPAGEEDQELADSPYLGPVFEFQQKTPGSLPGLERVHCFCYPAA 428 F +IAPH+ W DR+ P AGEEDQEL DSP LGPVFEF ++ PG+ P L RVHCFCYPA Sbjct: 363 FAEIAPHIRLWGDRYQPAAGEEDQELHDSPDLGPVFEFLERRPGACPDLSRVHCFCYPAV 422 Query: 429 ASHGTVSGDIPAISDGAYRLAQGIAALMYSEDIDYHYRNIQSYEEPELEGDEWTESP 485 SHG VSGDIPA+S+GA RLAQGIA ++Y+ED+ H+ +Q+Y EPE+ GDEWT +P Sbjct: 423 LSHGGVSGDIPAVSEGARRLAQGIAGMLYAEDVAQHFETMQAYAEPEVFGDEWTVAP 479 >ref|YP_002005528.1| flavoprotein involved in k+ transport, cog2072 [Cupriavidus taiwanensis LMG 19424] emb|CAQ69461.1| putative flavoprotein involved in K+ transport, COG2072 [Cupriavidus taiwanensis LMG 19424] Length = 491 Score = 646 bits (1666), Expect = 0.0, Method: Composition-based stats. Identities = 327/482 (67%), Positives = 385/482 (79%), Gaps = 1/482 (0%) Query: 4 TEPTLIPVAPPQGLAALEARVRQDLQWLALPGKSWTPAIERDGVPVIDVAIIGGGQAGMA 63 T+ T+ PP GLAALEAR+RQDL WL LP K+WT DG V+DVA+IGGG AG+A Sbjct: 2 TDATVATAPPPAGLAALEARLRQDLAWLELPAKAWTMPRSVDGQEVLDVAVIGGGMAGLA 61 Query: 64 ASVALSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPALTFRAWFESQ 123 AS L+HLG+ +D++P +EGPWATTARMETLRSPK LTGPALG PALTFRAWFE+Q Sbjct: 62 ASATLTHLGVRVRAFDRAPAGYEGPWATTARMETLRSPKQLTGPALGLPALTFRAWFEAQ 121 Query: 124 FGLDAWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVALQLQSPAGTS 183 FG AW+ALDKIPRLQWMDYLRW+R+V+ LDIRNEH+V + PRADG+VAL +Q+PAG Sbjct: 122 FGEAAWQALDKIPRLQWMDYLRWYRQVLALDIRNEHQVERIVPRADGLVALSMQTPAGPH 181 Query: 184 TVLARRVVVATGRDGLGGAFLPPLAAQLPRDRWAHSSDLFDYASLKGKRVGVIGGGASAM 243 TVLARRVV+ATGRDGLGGAF+PP+AA LPR WAHSSD DYA+L+GKRVGV+G GASAM Sbjct: 182 TVLARRVVLATGRDGLGGAFVPPVAAALPRHLWAHSSDEMDYAALRGKRVGVVGAGASAM 241 Query: 244 DSAATALEEGAARVDLLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWRIRHYVNAQQ 303 DSAATALE GA V++LIRR D+PR+NK KG+G+PGL GH LPD WKWR+RHY+N+QQ Sbjct: 242 DSAATALEAGAHSVEMLIRRADIPRVNKSKGAGNPGLTFGHYGLPDAWKWRLRHYINSQQ 301 Query: 304 VPPPSGSTRRVSRFANARFLLGTAIQSVEVKPDGTLLLQTNRGPLELDFLFFSTGFKIDW 363 VPPP GST RVSR ANA F LG A++S+E + DG L ++T G ELDFL FSTGF+I Sbjct: 302 VPPPRGSTLRVSRHANAYFNLGAALESIEARGDG-LRVRTPLGEFELDFLIFSTGFRIAL 360 Query: 364 SLRSEFKDIAPHVLNWSDRFTPPAGEEDQELADSPYLGPVFEFQQKTPGSLPGLERVHCF 423 R EF APH+ W DR PPAG+ED+EL+DSP LG FEFQ+KTPG+ PGL R+HCF Sbjct: 361 ETRPEFAAFAPHIRFWRDRHAPPAGQEDRELSDSPDLGEAFEFQEKTPGACPGLTRIHCF 420 Query: 424 CYPAAASHGTVSGDIPAISDGAYRLAQGIAALMYSEDIDYHYRNIQSYEEPELEGDEWTE 483 CYPAA SHGTVSGDIPAISDGA RL QGIAA +Y EDI+ HY +Q+Y EPE+ GDEW Sbjct: 421 CYPAALSHGTVSGDIPAISDGARRLGQGIAARLYQEDIELHYAALQAYAEPEVFGDEWVP 480 Query: 484 SP 485 +P Sbjct: 481 AP 482 >ref|ZP_06688333.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gb|EFF74753.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 495 Score = 639 bits (1648), Expect = 0.0, Method: Composition-based stats. Identities = 332/475 (69%), Positives = 390/475 (82%), Gaps = 2/475 (0%) Query: 9 IPVA-PPQGLAALEARVRQDLQWLALPGKSWTPAIERDGVPVIDVAIIGGGQAGMAASVA 67 +PVA PPQGL ALEAR+RQDL WL +P K+W DG V+DV +IGGG AG+AA+ + Sbjct: 3 LPVATPPQGLDALEARLRQDLSWLEIPAKNWVAPRLVDGQQVLDVVVIGGGMAGLAAAAS 62 Query: 68 LSHLGIPNVIYDQSPKDFEGPWATTARMETLRSPKTLTGPALGFPALTFRAWFESQFGLD 127 L+HLGI I+DQ+P +EGPWATTARMETLRSPK LTGPALG PALTFRAWFE+QFG Sbjct: 63 LTHLGITAPIFDQAPAGYEGPWATTARMETLRSPKQLTGPALGLPALTFRAWFEAQFGAA 122 Query: 128 AWEALDKIPRLQWMDYLRWFRRVMQLDIRNEHRVLAVQPRADGIVALQLQSPAGTSTVLA 187 WEALDKIPRLQWMDYLRW+RRV+ LD+RNEHRVL+VQPRAD +V L ++SP G STVLA Sbjct: 123 EWEALDKIPRLQWMDYLRWYRRVLNLDVRNEHRVLSVQPRADRLVQLDIESPTGRSTVLA 182 Query: 188 RRVVVATGRDGLGGAFLPPLAAQLPRDRWAHSSDLFDYASLKGKRVGVIGGGASAMDSAA 247 RRVV+ATGRDGLGGA +P A LPRDRWAHSSD+ DYA+L GKRVGV+G GASAMDSAA Sbjct: 183 RRVVLATGRDGLGGAHVPEFAKALPRDRWAHSSDVMDYATLAGKRVGVVGAGASAMDSAA 242 Query: 248 TALEEGAARVDLLIRRKDLPRINKGKGSGSPGLVNGHLHLPDEWKWRIRHYVNAQQVPPP 307 TALE GAA VDLLIRR D+PR+NKGKG+G+PGL +GHL LPDEWKW+IRHY+NA QVPPP Sbjct: 243 TALEAGAASVDLLIRRNDIPRVNKGKGAGNPGLTHGHLTLPDEWKWKIRHYINAAQVPPP 302 Query: 308 SGSTRRVSRFANARFLLGTAIQSVEVKPDGTLLLQTNRGPLELDFLFFSTGFKIDWSLRS 367 GST RVSRF NARF LG +Q++ + D + + T +G LDFL FSTGF+IDW++R Sbjct: 303 RGSTLRVSRFPNARFNLGCGVQALAMVGD-EIHVTTPKGIFVLDFLIFSTGFRIDWTVRP 361 Query: 368 EFKDIAPHVLNWSDRFTPPAGEEDQELADSPYLGPVFEFQQKTPGSLPGLERVHCFCYPA 427 EF +APHV NW DRFTPPAGEEDQEL DSP LGPVFE Q+K PG+ PGL+RVHCF YPA Sbjct: 362 EFAPLAPHVRNWGDRFTPPAGEEDQELHDSPDLGPVFELQEKVPGACPGLDRVHCFSYPA 421 Query: 428 AASHGTVSGDIPAISDGAYRLAQGIAALMYSEDIDYHYRNIQSYEEPELEGDEWT 482 A + GT+SGDIPAIS+GA RLAQGIA L Y ED++ +Y N++++ EPE+ GDEWT Sbjct: 422 ALTQGTISGDIPAISEGAKRLAQGIAGLFYREDVETYYANMEAFSEPEVFGDEWT 476