BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2994.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774983.1| transcription regulator protein [Herbaspiril... 515 e-144 gb|EGH79388.1| regulatory protein, LysR:LysR, substrate-binding ... 292 5e-77 ref|ZP_02909085.1| transcriptional regulator, LysR family [Burkh... 290 2e-76 ref|YP_001585065.1| LysR family transcriptional regulator [Burkh... 283 3e-74 gb|EGC99098.1| LysR family transcriptional regulator [Burkholder... 281 9e-74 >ref|YP_003774983.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63075.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 294/312 (94%), Positives = 303/312 (97%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELEAELGYALFDRNGPRVTPTAK 60 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIG+LE+ELGYALFDRNGPRVTPTAK Sbjct: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGDLESELGYALFDRNGPRVTPTAK 60 Query: 61 AFLLYEEVERSLVGLRSIRERAQEIAREEVHPVHLVATPALASTIAPAALQLLAADKERA 120 AFLLYEEVERSLVGLRSIRERA EIAREEVHPVHLVATPALASTIAPAALQLLAAD + A Sbjct: 61 AFLLYEEVERSLVGLRSIRERALEIAREEVHPVHLVATPALASTIAPAALQLLAADGQHA 120 Query: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVLRADSPLAR 180 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAV+RAD PLA Sbjct: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVVRADHPLAS 180 Query: 181 LDVVTVDALRGERVITMSNRYRLRQRVELALGEDSQLDVAIDTNTSFNAIMAARAGLGVA 240 D +T ALRG+RVITMSNRYRLRQRVELALGEDSQLDVAIDTNTSFNAIMAARAGLGVA Sbjct: 181 KDKLTRAALRGQRVITMSNRYRLRQRVELALGEDSQLDVAIDTNTSFNAIMAARAGLGVA 240 Query: 241 LVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQGF 300 LVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVT+RLIDAVE+AAR+TLQGF Sbjct: 241 LVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTERLIDAVEQAARTTLQGF 300 Query: 301 VKRDASLHDELL 312 VKRDASLHDELL Sbjct: 301 VKRDASLHDELL 312 >gb|EGH79388.1| regulatory protein, LysR:LysR, substrate-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 316 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 167/313 (53%), Positives = 228/313 (72%), Gaps = 4/313 (1%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELEAELGYALFDRNGPRVTPTAK 60 MDL QLEAFAAVM+ GSVT AG+ LGRSQP+V++AI ELE ELG+ALF+R+GP+VTPT K Sbjct: 1 MDLRQLEAFAAVMSAGSVTAAGKMLGRSQPSVTRAIQELEQELGFALFERSGPKVTPTHK 60 Query: 61 AFLLYEEVERSLVGLRSIRERAQEIAREEVHPVHLVATPALASTIAPAALQLLAADKERA 120 AF++Y EVE +L+G+R+IR+RAQ IA+EE H + LVA ALA+ + PAAL L E Sbjct: 61 AFMMYGEVESALLGVRNIRQRAQHIAQEENHQIKLVAISALAAGLLPAALSRLP---EHL 117 Query: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVLRADSPLAR 180 P+ + L+S S E VVHAVL +T+ LG SLP+ HRGL++HWIGEAPCVAVL ADS LA Sbjct: 118 RPQQIQLQSMSPENVVHAVLSKTMDLGAVSLPLEHRGLEIHWIGEAPCVAVLPADSALAA 177 Query: 181 LDVVTVDALRGERVITMSNRYRLRQRVELALGE-DSQLDVAIDTNTSFNAIMAARAGLGV 239 +V++++ LR + +ITM+N YR R+R++ A E Q +DTNTS A+ AR GLG+ Sbjct: 178 HEVLSMELLRQQTLITMANPYRFRRRIDKAFQEAGGQPPRMLDTNTSLIAMQMARVGLGI 237 Query: 240 ALVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQG 299 ALV+P TA G+P++G+VV+ +A IPF+FG+++ + P+ V +ID + +A+ L Sbjct: 238 ALVDPFTAMGVPVQGVVVRPIACNIPFFFGLISAFASPLSDVASAMIDEIADSAKILLPE 297 Query: 300 FVKRDASLHDELL 312 + +AS HD LL Sbjct: 298 MIMHEASAHDALL 310 >ref|ZP_02909085.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] gb|EDT39782.1| transcriptional regulator, LysR family [Burkholderia ambifaria MEX-5] Length = 339 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 168/313 (53%), Positives = 219/313 (69%), Gaps = 4/313 (1%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELEAELGYALFDRNGPRVTPTAK 60 M+L+QLEAF+AVM+ GSVTGAG LGRSQPAV++ I ELEA+LGYALFDR+GPRVTPT + Sbjct: 1 MELHQLEAFSAVMSAGSVTGAGELLGRSQPAVTRQIQELEADLGYALFDRHGPRVTPTRR 60 Query: 61 AFLLYEEVERSLVGLRSIRERAQEIAREEVHPVHLVATPALASTIAPAALQLLAADKERA 120 AFLLYEEVERSL+GLR+I RA+ + E PV + ATP+LA+T+ PAA LAA + A Sbjct: 61 AFLLYEEVERSLIGLRAIEARARALGDETAEPVRIAATPSLAATLVPAA---LAALPDGA 117 Query: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVLRADSPLAR 180 + H LRS SAE VVH VL T +G+ +LP+AH GLD+HWI + PCVAVL AD PLA Sbjct: 118 YAPHYQLRSESAEHVVHEVLAGTADIGVVTLPMAHAGLDVHWIAQTPCVAVLPADDPLAA 177 Query: 181 LDVVTVDALRGERVITMSNRYRLRQRV-ELALGEDSQLDVAIDTNTSFNAIMAARAGLGV 239 + + L R++T++NR+RLRQR+ V I+TN S NA+MAARAG+G+ Sbjct: 178 KPRIALRDLARRRIVTVANRHRLRQRIDAAFAAARVDARVFIETNASLNAVMAARAGIGI 237 Query: 240 ALVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQG 299 +V+PAT +P++G+V + L V+IPF FGV TP GK L+DA+ + R+ L Sbjct: 238 GIVDPATGVALPVDGVVARPLDVDIPFAFGVATPAGKARTTAVDALLDALHRTTRALLDD 297 Query: 300 FVKRDASLHDELL 312 + DA+ HD LL Sbjct: 298 VIFHDAAAHDALL 310 >ref|YP_001585065.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|ABX18773.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] Length = 403 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 171/313 (54%), Positives = 219/313 (69%), Gaps = 4/313 (1%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELEAELGYALFDRNGPRVTPTAK 60 M+L+QLEAF+AVM+ GSVTGAG LGRSQPAV++ I ELEA+LGYALFDR+GPRVTPT + Sbjct: 74 MELHQLEAFSAVMSAGSVTGAGELLGRSQPAVTRQIQELEADLGYALFDRHGPRVTPTRR 133 Query: 61 AFLLYEEVERSLVGLRSIRERAQEIAREEVHPVHLVATPALASTIAPAALQLLAADKERA 120 AFLLYEEVERSL+GLR+I RA+ I E PV + ATPALA+TI PAA LAA + A Sbjct: 134 AFLLYEEVERSLIGLRAIDARARAIGSEIAQPVRIAATPALAATIVPAA---LAALPDDA 190 Query: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVLRADSPLAR 180 H LRS SAE VVH VL T +G+ +LP+AH GLD+HWI + PCVAVL A PLA Sbjct: 191 HAPHYQLRSESAEHVVHEVLAGTADVGVVTLPMAHAGLDVHWIAQTPCVAVLAAGDPLAA 250 Query: 181 LDVVTVDALRGERVITMSNRYRLRQRVELALGEDS-QLDVAIDTNTSFNAIMAARAGLGV 239 + + L R++T++NR+RLRQR++ A + V I+TN S NA+MAARAG+G+ Sbjct: 251 KPRIALRDLARRRIVTVANRHRLRQRIDAAFAAARVEPRVFIETNASLNAVMAARAGVGI 310 Query: 240 ALVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQG 299 +V+PAT +P++G+V + L V+IPF FGV TP GK L+DA+ + R+ Sbjct: 311 GIVDPATGVALPVDGVVARPLDVDIPFAFGVATPAGKTRTAAVDALLDALHRTTRALFDD 370 Query: 300 FVKRDASLHDELL 312 + DAS HD LL Sbjct: 371 AIFHDASAHDALL 383 >gb|EGC99098.1| LysR family transcriptional regulator [Burkholderia sp. TJI49] Length = 330 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 171/313 (54%), Positives = 217/313 (69%), Gaps = 4/313 (1%) Query: 1 MDLNQLEAFAAVMTLGSVTGAGRSLGRSQPAVSKAIGELEAELGYALFDRNGPRVTPTAK 60 M+L+QLEAF+AVM+ GSVTGAG LGRSQPAV++ I ELEA+LGYALFDR+GPRVTPT + Sbjct: 1 MELHQLEAFSAVMSAGSVTGAGELLGRSQPAVTRQIQELEADLGYALFDRHGPRVTPTRR 60 Query: 61 AFLLYEEVERSLVGLRSIRERAQEIAREEVHPVHLVATPALASTIAPAALQLLAADKERA 120 AFLLYEEVERSL+GLR+I RA+ I E PV + ATPALA+TI PAAL L A Sbjct: 61 AFLLYEEVERSLIGLRAIDARARAIGSEIAQPVRIAATPALAATIVPAALAALPD---DA 117 Query: 121 FPEHVHLRSASAEQVVHAVLHRTVSLGLTSLPVAHRGLDLHWIGEAPCVAVLRADSPLAR 180 H LRS SAE VVH VL T +G+ +LP+AH GLD+HWI + PCVAVL AD PLA Sbjct: 118 HAPHYQLRSESAEHVVHEVLAGTADVGVVTLPMAHAGLDVHWIAQMPCVAVLAADDPLAA 177 Query: 181 LDVVTVDALRGERVITMSNRYRLRQRVELALGEDS-QLDVAIDTNTSFNAIMAARAGLGV 239 + + L R++T++NR+RLRQR++ A + V I+TN S NA+MAARAG+G+ Sbjct: 178 KPRIALRDLARRRIVTVANRHRLRQRIDTAFAAARIEPRVFIETNASLNAVMAARAGVGI 237 Query: 240 ALVEPATAYGMPIEGMVVKRLAVEIPFYFGVVTPYGKPVEGVTQRLIDAVEKAARSTLQG 299 +V+PAT +P++G+V + L V+IPF FGV TP GK L+DA+ + R+ Sbjct: 238 GIVDPATGVALPVDGVVARPLDVDIPFAFGVATPAGKMRTAAVDALLDALHRTTRALFDD 297 Query: 300 FVKRDASLHDELL 312 DAS HD LL Sbjct: 298 AFFHDASAHDALL 310