BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2990.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774979.1| metal ion ABC transporter periplasmic compon... 456 e-126 ref|YP_002355104.1| NLPA lipoprotein [Thauera sp. MZ1T] >gi|2175... 363 2e-98 ref|YP_004752200.1| methionine ABC transporter substrate-binding... 316 3e-84 ref|YP_002869765.1| putative D-methionine ABC transporter substr... 314 9e-84 ref|YP_004351151.1| D-methionine ABC transporter periplasmic pro... 314 1e-83 >ref|YP_003774979.1| metal ion ABC transporter periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] emb|CAP19664.1| surface antigen protein [Herbaspirillum seropedicae] gb|ADJ63071.1| ABC-type metal ion transport system, periplasmic component/surface antigen protein [Herbaspirillum seropedicae SmR1] Length = 263 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 250/263 (95%), Positives = 261/263 (99%) Query: 32 MIRKLIPHLVAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIELQVKVFT 91 MIRKLIPHL AGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGI+LQVKVFT Sbjct: 1 MIRKLIPHLFAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIDLQVKVFT 60 Query: 92 DYIQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKFKKVAD 151 DY+QPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQK+KK+AD Sbjct: 61 DYVQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKYKKIAD 120 Query: 152 IPDGATIAIPNDPSNSGRALLLLARNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAAT 211 IP+GATIAIPNDPSNSGRALLLLARNGLIKLKD++NIS+TQKDIVENPKKLKFRALEAAT Sbjct: 121 IPNGATIAIPNDPSNSGRALLLLARNGLIKLKDNTNISATQKDIVENPKKLKFRALEAAT 180 Query: 212 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSAAIKKLAA 271 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDS AIKKLAA Sbjct: 181 LPRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSPAIKKLAA 240 Query: 272 ALNTPDVKKFIEEKYKGAVVPAF 294 ALN+PDVKKFIEEKY+GA+VPAF Sbjct: 241 ALNSPDVKKFIEEKYQGAIVPAF 263 >ref|YP_002355104.1| NLPA lipoprotein [Thauera sp. MZ1T] gb|ACK54208.1| NLPA lipoprotein [Thauera sp. MZ1T] Length = 266 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 197/262 (75%), Positives = 226/262 (86%) Query: 33 IRKLIPHLVAGAALAFSVGAHAADKLVIAATPVPHAEILEHIKPALAKEGIELQVKVFTD 92 +RKL+ + LA A AAD+LVIAATPVPHAEILE +KP LAKEG+EL++KVFTD Sbjct: 5 LRKLLAAALGTLTLAAGTAAVAADRLVIAATPVPHAEILEFVKPMLAKEGVELEIKVFTD 64 Query: 93 YIQPAAQTNEKQVDGNFFLHQPYLDQFKKSHKNDIEVPVAKVHVEPFAAYSQKFKKVADI 152 Y+QP+ QTNEK+VDGNFFLHQPYLD FK+ KNDI+ VAKVHVEP AYS K K VA I Sbjct: 65 YVQPSMQTNEKRVDGNFFLHQPYLDAFKQKQKNDIQTVVAKVHVEPLGAYSAKHKSVAAI 124 Query: 153 PDGATIAIPNDPSNSGRALLLLARNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAATL 212 P+GAT+AIPNDPSNSGRALLL+ARNGLI LKD +NIS+TQKDI +NPKKLK R LEAATL Sbjct: 125 PEGATVAIPNDPSNSGRALLLMARNGLITLKDLNNISATQKDIADNPKKLKIRELEAATL 184 Query: 213 PRVLNQVDVALINTNYALEAKLNPVKDSLFIEDANSPYANLLVAREDNKDSAAIKKLAAA 272 PRVLNQVD+A+INTNYA+EAKLNPVKDSLFIEDA SPYANLLVAREDN S AIKKLAAA Sbjct: 185 PRVLNQVDLAVINTNYAIEAKLNPVKDSLFIEDATSPYANLLVAREDNATSPAIKKLAAA 244 Query: 273 LNTPDVKKFIEEKYKGAVVPAF 294 LN+P+V++F+ +KY+GAVVPAF Sbjct: 245 LNSPEVRQFLSDKYQGAVVPAF 266 >ref|YP_004752200.1| methionine ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] gb|AEK61377.1| Methionine ABC transporter substrate-binding protein [Collimonas fungivorans Ter331] Length = 257 Score = 316 bits (809), Expect = 3e-84, Method: Composition-based stats. Identities = 168/199 (84%), Positives = 187/199 (93%) Query: 56 DKLVIAATPVPHAEILEHIKPALAKEGIELQVKVFTDYIQPAAQTNEKQVDGNFFLHQPY 115 DKLVIAATPVPHAEIL+ +KP LAKEG++LQVKVFTDYIQPA QTNEK+VDGNFFLHQPY Sbjct: 31 DKLVIAATPVPHAEILDFVKPILAKEGVDLQVKVFTDYIQPAVQTNEKRVDGNFFLHQPY 90 Query: 116 LDQFKKSHKNDIEVPVAKVHVEPFAAYSQKFKKVADIPDGATIAIPNDPSNSGRALLLLA 175 L++FKKSHKNDIEV + KVHVEPFA YS K+KK+AD+PDGAT+AIPNDPSNSGRALLLL+ Sbjct: 91 LNEFKKSHKNDIEVVITKVHVEPFAGYSTKYKKLADLPDGATVAIPNDPSNSGRALLLLS 150 Query: 176 RNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAATLPRVLNQVDVALINTNYALEAKLN 235 R GL+KLKD NIS+TQKDI+ENPK LKF+ LEAATLPRVLNQVD+ALINTNYA+EAKLN Sbjct: 151 RQGLLKLKDPGNISATQKDIIENPKHLKFKELEAATLPRVLNQVDLALINTNYAIEAKLN 210 Query: 236 PVKDSLFIEDANSPYANLL 254 PVKDSLFIEDANSPYANLL Sbjct: 211 PVKDSLFIEDANSPYANLL 229 >ref|YP_002869765.1| putative D-methionine ABC transporter substrate-binding protein [Pseudomonas fluorescens SBW25] emb|CAY46353.1| putative D-methionine ABC transport system, substrate-binding protein [Pseudomonas fluorescens SBW25] Length = 256 Score = 314 bits (805), Expect = 9e-84, Method: Composition-based stats. Identities = 165/239 (69%), Positives = 196/239 (82%), Gaps = 1/239 (0%) Query: 56 DKLVIAATPVPHAEILEHIKPALAKEGIELQVKVFTDYIQPAAQTNEKQVDGNFFLHQPY 115 + + +AA+PVPHAEILE +KPALAKEG++LQVKVFTDY+QP Q EK++D NFF HQPY Sbjct: 19 ETITVAASPVPHAEILEFVKPALAKEGVDLQVKVFTDYVQPNVQVAEKRLDANFFQHQPY 78 Query: 116 LDQFKKSHKNDIEVPVAKVHVEPFAAYSQKFKKVADIPDGATIAIPNDPSNSGRALLLLA 175 LD+F K+ + V V VH+EP AYS K+KK+AD+PDGA + IPND +N GRALLLLA Sbjct: 79 LDEFNKAKGTHL-VSVGAVHLEPLGAYSSKYKKLADLPDGANVVIPNDATNGGRALLLLA 137 Query: 176 RNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAATLPRVLNQVDVALINTNYALEAKLN 235 +NGLI LKD +NI ST KDI N KKLKFR LEAATLPRVL QVD+ALINTNYALEAKL+ Sbjct: 138 KNGLITLKDPTNILSTIKDITGNDKKLKFRELEAATLPRVLTQVDLALINTNYALEAKLD 197 Query: 236 PVKDSLFIEDANSPYANLLVAREDNKDSAAIKKLAAALNTPDVKKFIEEKYKGAVVPAF 294 P KD+L IE +SPY N+LV REDNKDS A+KKL AAL+TP+VK+FIEEKYKGA+ PAF Sbjct: 198 PSKDALVIEGNDSPYVNILVTREDNKDSDAVKKLVAALHTPEVKQFIEEKYKGAIKPAF 256 >ref|YP_004351151.1| D-methionine ABC transporter periplasmic protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA66147.1| Putative D-methionine ABC transporter, periplasmic component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 257 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 165/239 (69%), Positives = 197/239 (82%), Gaps = 1/239 (0%) Query: 56 DKLVIAATPVPHAEILEHIKPALAKEGIELQVKVFTDYIQPAAQTNEKQVDGNFFLHQPY 115 D L +AATPVPHAEILE +KPALAKEG++L+VKVFTDYIQP Q EK++D NFF HQPY Sbjct: 20 DTLTVAATPVPHAEILEFVKPALAKEGVDLKVKVFTDYIQPNVQVAEKRLDANFFQHQPY 79 Query: 116 LDQFKKSHKNDIEVPVAKVHVEPFAAYSQKFKKVADIPDGATIAIPNDPSNSGRALLLLA 175 LD+F K+ ++ V VA VH+EP AYS K+K +A++P G + IPND +N GRALLLLA Sbjct: 80 LDEFNKAKGTNL-VSVAGVHLEPLGAYSSKYKTLAELPGGGNVVIPNDATNGGRALLLLA 138 Query: 176 RNGLIKLKDSSNISSTQKDIVENPKKLKFRALEAATLPRVLNQVDVALINTNYALEAKLN 235 + G+IKLKDS+NI ST KDI ENPK LKFR LEAAT+PRVL QVD+ALINTNYALEAKL+ Sbjct: 139 KAGVIKLKDSNNILSTTKDITENPKDLKFRELEAATIPRVLTQVDLALINTNYALEAKLD 198 Query: 236 PVKDSLFIEDANSPYANLLVAREDNKDSAAIKKLAAALNTPDVKKFIEEKYKGAVVPAF 294 P KD+L IE +SPY N+LVARED+KDS A+KKL AAL+TP+VK FI EKYKGAV+PAF Sbjct: 199 PSKDALVIEGNDSPYVNILVAREDDKDSEAMKKLVAALHTPEVKAFILEKYKGAVLPAF 257