BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2989.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004617322.1| XRE family transcriptional regulator [Ramlib...   126   1e-27
ref|YP_157882.1| plasmid maintenance system antidote protein [Ar...   124   4e-27
ref|YP_998854.1| XRE family plasmid maintenance system antidote ...   120   8e-26
emb|CBX27742.1| Virulence-associated protein I [uncultured Desul...   104   5e-21
emb|CBX31187.1| Virulence-associated protein I [uncultured Desul...   103   9e-21

>ref|YP_004617322.1| XRE family transcriptional regulator [Ramlibacter tataouinensis
          TTB310]
 gb|AEG91303.1| transcriptional regulator, XRE family-like protein [Ramlibacter
          tataouinensis TTB310]
          Length = 100

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 62/90 (68%), Positives = 77/90 (85%)

Query: 5  LEEIHPGEILLEEFIKPMGMTAARVASDIDVPVSRISEIINGKRPVTVDTAVRLGVYFKM 64
          L+EIHPGEILLEEF++PMG+TA ++A+DIDVP SRIS+I+N  RP+T DTA+RLG++F M
Sbjct: 6  LDEIHPGEILLEEFMRPMGITARQLAADIDVPPSRISDIVNAARPITADTALRLGLFFGM 65

Query: 65 DPLFWLNLQSEYDVRIAYRDLLPVIKSRIR 94
          DP FWLNLQ+EYDVR+A R LL  I  RIR
Sbjct: 66 DPRFWLNLQAEYDVRMAKRTLLDKIAPRIR 95


>ref|YP_157882.1| plasmid maintenance system antidote protein [Aromatoleum aromaticum
           EbN1]
 emb|CAI06981.1| plasmid maintenance system antidote protein [Aromatoleum aromaticum
           EbN1]
          Length = 105

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/97 (60%), Positives = 80/97 (82%)

Query: 5   LEEIHPGEILLEEFIKPMGMTAARVASDIDVPVSRISEIINGKRPVTVDTAVRLGVYFKM 64
           L+EIHPGEILLE+F++PMG+TA ++A+DIDV  SRISE+++G+RP+T DTA+RLG++F M
Sbjct: 7   LDEIHPGEILLEDFLRPMGITARQLAADIDVSPSRISELVHGRRPITADTALRLGLFFGM 66

Query: 65  DPLFWLNLQSEYDVRIAYRDLLPVIKSRIRPLMTAHG 101
           +P FWLNLQ+EYD+RIA R+L   I  RIR   + H 
Sbjct: 67  EPRFWLNLQAEYDMRIATRELRDKIAPRIRVFHSRHA 103


>ref|YP_998854.1| XRE family plasmid maintenance system antidote protein
          [Verminephrobacter eiseniae EF01-2]
 gb|ABM59836.1| plasmid maintenance system antidote protein, XRE family
          [Verminephrobacter eiseniae EF01-2]
          Length = 102

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/94 (58%), Positives = 79/94 (84%)

Query: 1  MSKKLEEIHPGEILLEEFIKPMGMTAARVASDIDVPVSRISEIINGKRPVTVDTAVRLGV 60
          M++ L+EIHPGEILLE+F+KPMG++A ++A+DIDV  SRIS++++G RP+T DTA+RLG+
Sbjct: 1  MAELLDEIHPGEILLEDFMKPMGISARQLAADIDVSPSRISDLVHGNRPITADTALRLGL 60

Query: 61 YFKMDPLFWLNLQSEYDVRIAYRDLLPVIKSRIR 94
          +F M+P FW+NLQ+EYD+R+A R +   I  RIR
Sbjct: 61 FFDMEPRFWMNLQTEYDMRVATRTVREKIALRIR 94


>emb|CBX27742.1| Virulence-associated protein I [uncultured Desulfobacterium sp.]
          Length = 101

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 46/80 (57%), Positives = 64/80 (80%)

Query: 1  MSKKLEEIHPGEILLEEFIKPMGMTAARVASDIDVPVSRISEIINGKRPVTVDTAVRLGV 60
          M+K+L  IHPGEIL+EEF++PMG++  R+A DI VP  RI+EI++GKR ++ DTA+RLG 
Sbjct: 1  MNKQLPPIHPGEILMEEFLEPMGISQYRLAKDISVPPRRINEIVHGKRSISADTALRLGR 60

Query: 61 YFKMDPLFWLNLQSEYDVRI 80
          +F M P FWLNLQ+ YD+ +
Sbjct: 61 FFGMSPQFWLNLQTRYDLEV 80


>emb|CBX31187.1| Virulence-associated protein I [uncultured Desulfobacterium sp.]
          Length = 110

 Score =  103 bits (257), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 54/97 (55%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 1  MSKK--LEEIHPGEILLEEFIKPMGMTAARVASDIDVPVSRISEIINGKRPVTVDTAVRL 58
          MS K  LE I PGEIL E+F++PMG++  +++ DI VP +RISEI+NGKR +T DTA+RL
Sbjct: 1  MSNKDFLEPITPGEILREDFMEPMGISMNQLSRDIAVPPNRISEIVNGKRGITADTALRL 60

Query: 59 GVYFKMDPLFWLNLQSEYDVRIAYRDLLPVIKSRIRP 95
            YF ++  FWLNLQSEYD+R+  R + P I+ RI P
Sbjct: 61 ERYFGVEAQFWLNLQSEYDLRVMKRKIGPDIEQRIFP 97