BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2986.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775682.1| amino acid ABC transporter/signal transducti... 426 e-117 ref|YP_003774978.1| amino acid ABC transporter periplasmic prote... 387 e-106 ref|YP_004750929.1| ABC transporter substrate binding protein am... 369 e-100 gb|ADU90705.1| putative amino acid transporter periplasmic ligan... 352 4e-95 ref|YP_001351726.1| ABC transporter substrate binding protein [J... 304 1e-80 >ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63774.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 230/266 (86%), Positives = 240/266 (90%) Query: 46 HMKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGL 105 M K +LAV L L + +A+ADALADIQK G VRI VPQDFAPFGSV +DLQLQGL Sbjct: 2 QMSPRKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQGL 61 Query: 106 DIDVAKLIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAP 165 DIDVA+LIAQKMGVK+QLVPVASANRIAYLQTHKADLVISTLG+NAEREKVIDFSQPYAP Sbjct: 62 DIDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYAP 121 Query: 166 YNNSVFGVASCKVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYV 225 YNNSVFGVAS KVSGPADLA KTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYV Sbjct: 122 YNNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYV 181 Query: 226 SGQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAK 285 SGQVQLVGTGDFVAYALAEKAP NKPVLKYII ES+C+VGLNKGE ALL KVNE LTAAK Sbjct: 182 SGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAAK 241 Query: 286 KSGELNAIVQKWLNVPLPAKMATTFQ 311 KSGELN IVQKWLNVPLPAKMA T Q Sbjct: 242 KSGELNGIVQKWLNVPLPAKMAATLQ 267 >ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63070.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 198/265 (74%), Positives = 228/265 (86%) Query: 47 MKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLD 106 M F K +A SL L+ ++ A AD LADIQKAG V+I VPQDFAP+GSVTSDLQLQGLD Sbjct: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 Query: 107 IDVAKLIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPY 166 IDVA+L+A+ MGVK +LVPV ++R+A+LQTHK DL+ISTLGKNAEREKVIDFSQ YAPY Sbjct: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 Query: 167 NNSVFGVASCKVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 226 NNSVFGVA+ KV+GPADLA +TVGVAR TF+DL LTD+ PKS IKRYEDNN +I+AYVS Sbjct: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 Query: 227 GQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKK 286 GQVQLVGTGDFVAYALAEK P NKP+LKYIIN S+C VG+NKGE AL+ KVNE LTA+KK Sbjct: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 Query: 287 SGELNAIVQKWLNVPLPAKMATTFQ 311 SGELN IV+KWLNVPLP K+ATT+Q Sbjct: 241 SGELNGIVKKWLNVPLPEKIATTYQ 265 >ref|YP_004750929.1| ABC transporter substrate binding protein amino acid [Collimonas fungivorans Ter331] gb|AEK60106.1| ABC transporter, substrate binding protein amino acid [Collimonas fungivorans Ter331] Length = 276 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 201/267 (75%), Positives = 223/267 (83%), Gaps = 1/267 (0%) Query: 45 DHMKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQG 104 D M+FAK +L ++ Q AQADALADIQK G +RIAVPQDFAPFGSVTSD++LQG Sbjct: 11 DLMRFAKLLLLCLALCF-MAVQNAQADALADIQKRGVLRIAVPQDFAPFGSVTSDMKLQG 69 Query: 105 LDIDVAKLIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYA 164 LDIDVA LIA+ MG+K++LVPV SANRIAYLQT KADL ISTLGKNAEREKVI FSQPY+ Sbjct: 70 LDIDVATLIAKNMGLKLELVPVTSANRIAYLQTRKADLAISTLGKNAEREKVIAFSQPYS 129 Query: 165 PYNNSVFGVASCKVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY 224 PYNNSVFG AS KVSGPADLAGKT+GVARGTFQD QLT+TAP SA IKRYEDNN MI+AY Sbjct: 130 PYNNSVFGPASLKVSGPADLAGKTIGVARGTFQDSQLTETAPPSAVIKRYEDNNGMIAAY 189 Query: 225 VSGQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAA 284 ++GQVQLVGTGDFVA ALA KA NKP +KYII ES+C VGL K E AL+ KVN L+ A Sbjct: 190 LAGQVQLVGTGDFVAVALAGKAASNKPQMKYIIQESACYVGLLKEEPALMAKVNAALSQA 249 Query: 285 KKSGELNAIVQKWLNVPLPAKMATTFQ 311 KKS ELNAIVQKWLNVPLP KMA F+ Sbjct: 250 KKSNELNAIVQKWLNVPLPGKMAVQFE 276 >gb|ADU90705.1| putative amino acid transporter periplasmic ligand binding protein [Collimonas sp. MPS11E8] Length = 268 Score = 352 bits (903), Expect = 4e-95, Method: Composition-based stats. Identities = 190/264 (71%), Positives = 217/264 (82%) Query: 47 MKFAKPVLAVSLALLGLSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLD 106 M+ K + ++L L ++ A AD+L+DIQK G +RIAVPQDFAPFGSVT++L+LQGLD Sbjct: 4 MRIVKTLFLLALGLPLIAAPAAHADSLSDIQKRGVLRIAVPQDFAPFGSVTAELKLQGLD 63 Query: 107 IDVAKLIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPY 166 IDVA L+A+ MG+K+QLVPV SANRIAYLQT KADLVISTLGKNAEREKVI FSQPY+PY Sbjct: 64 IDVAGLVAKNMGLKLQLVPVTSANRIAYLQTAKADLVISTLGKNAEREKVIAFSQPYSPY 123 Query: 167 NNSVFGVASCKVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVS 226 NNSVFG + KVSGPADLAGKT+GVARGTFQD QL++TAP SATIKRYEDNN MISAY++ Sbjct: 124 NNSVFGPTAIKVSGPADLAGKTIGVARGTFQDSQLSETAPPSATIKRYEDNNGMISAYLA 183 Query: 227 GQVQLVGTGDFVAYALAEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKK 286 GQVQLVGTGDFVA ALA K GNKP +KYII ES+C VGL K E AL+ VN LT AKK Sbjct: 184 GQVQLVGTGDFVAVALAAKTTGNKPQMKYIIQESACYVGLLKEEPALMAAVNAALTKAKK 243 Query: 287 SGELNAIVQKWLNVPLPAKMATTF 310 ELN IV KWLNVPLP K+A F Sbjct: 244 DHELNTIVMKWLNVPLPDKLARQF 267 >ref|YP_001351726.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] gb|ABR90168.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] Length = 259 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 156/244 (63%), Positives = 190/244 (77%) Query: 63 LSTQVAQADALADIQKAGTVRIAVPQDFAPFGSVTSDLQLQGLDIDVAKLIAQKMGVKVQ 122 L T VA+ADAL DIQK G +R+AVPQDF PFGSVT+D+ QGLDIDVA LIA+K+GVKV+ Sbjct: 16 LLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVATLIAKKLGVKVE 75 Query: 123 LVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFGVASCKVSGPA 182 L+PV SANRI YLQT K DLVIS++GKN EREKVIDFS YAP+ N VFG A KV+ PA Sbjct: 76 LIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGPADQKVAAPA 135 Query: 183 DLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYAL 242 DLAGKT+GV RG+ +DL+L+ AP+SATIKRYEDNN IS+++S QVQLV TG+ +A A+ Sbjct: 136 DLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQLVATGNVIAAAI 195 Query: 243 AEKAPGNKPVLKYIINESSCSVGLNKGEAALLGKVNEVLTAAKKSGELNAIVQKWLNVPL 302 K P KP K++I S CS+GLNKGE LL KVN ++ AKK G LN + +KWL +PL Sbjct: 196 IAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLNTLTEKWLGLPL 255 Query: 303 PAKM 306 PA + Sbjct: 256 PASL 259