BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2985.p (263 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774978.1| amino acid ABC transporter periplasmic prote... 446 e-123 ref|YP_003775682.1| amino acid ABC transporter/signal transducti... 373 e-101 ref|YP_004750929.1| ABC transporter substrate binding protein am... 327 2e-87 gb|ADU90705.1| putative amino acid transporter periplasmic ligan... 318 7e-85 ref|YP_001351726.1| ABC transporter substrate binding protein [J... 267 9e-70 >ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63070.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 242/265 (91%), Positives = 250/265 (94%), Gaps = 2/265 (0%) Query: 1 MKFVKTILA--LAALATLTGTACADNLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 58 M F+KT +A L +A A AD LADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD Sbjct: 1 MNFIKTAIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 60 Query: 59 IDVAKLVAKGLGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 118 IDVA+LVAKG+GVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY Sbjct: 61 IDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 120 Query: 119 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLISAYVS 178 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLI+AYVS Sbjct: 121 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVS 180 Query: 179 GQVQIVGTGDFVAYALAEKTPNNKPLLKYIINVSTCYVGMNKGESALMAKVNEALTASKK 238 GQVQ+VGTGDFVAYALAEKTP NKPLLKYIINVSTCYVGMNKGE ALMAKVNEALTASKK Sbjct: 181 GQVQLVGTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKK 240 Query: 239 SGELNGIVKKWLNVPLPEKMATTYQ 263 SGELNGIVKKWLNVPLPEK+ATTYQ Sbjct: 241 SGELNGIVKKWLNVPLPEKIATTYQ 265 >ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63774.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 198/261 (75%), Positives = 227/261 (86%), Gaps = 2/261 (0%) Query: 5 KTILA--LAALATLTGTACADNLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVA 62 KT+LA L A G A AD LADIQK GVV+IGVPQDFAP+GSV +DLQLQGLDIDVA Sbjct: 7 KTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVA 66 Query: 63 KLVAKGLGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSV 122 +L+A+ +GVK +LVPV ++R+A+LQTHK DL+ISTLG+NAEREKVIDFSQ YAPYNNSV Sbjct: 67 RLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYAPYNNSV 126 Query: 123 FGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLISAYVSGQVQ 182 FGVA++KV+GPADLA++TVGVAR TF+DL LTD+ PKS IKRYEDNN +ISAYVSGQVQ Sbjct: 127 FGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQ 186 Query: 183 IVGTGDFVAYALAEKTPNNKPLLKYIINVSTCYVGMNKGESALMAKVNEALTASKKSGEL 242 +VGTGDFVAYALAEK PNNKP+LKYII S C VG+NKGE AL+AKVNEALTA+KKSGEL Sbjct: 187 LVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAAKKSGEL 246 Query: 243 NGIVKKWLNVPLPEKMATTYQ 263 NGIV+KWLNVPLP KMA T Q Sbjct: 247 NGIVQKWLNVPLPAKMAATLQ 267 >ref|YP_004750929.1| ABC transporter substrate binding protein amino acid [Collimonas fungivorans Ter331] gb|AEK60106.1| ABC transporter, substrate binding protein amino acid [Collimonas fungivorans Ter331] Length = 276 Score = 327 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 170/244 (69%), Positives = 204/244 (83%) Query: 20 ACADNLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVAKLVAKGLGVKAELVPVP 79 A AD LADIQK GV++I VPQDFAP+GSVTSD++LQGLDIDVA L+AK +G+K ELVPV Sbjct: 33 AQADALADIQKRGVLRIAVPQDFAPFGSVTSDMKLQGLDIDVATLIAKNMGLKLELVPVT 92 Query: 80 ISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFGVAAIKVAGPADLANQ 139 ++R+A+LQT K DL ISTLGKNAEREKVI FSQ Y+PYNNSVFG A++KV+GPADLA + Sbjct: 93 SANRIAYLQTRKADLAISTLGKNAEREKVIAFSQPYSPYNNSVFGPASLKVSGPADLAGK 152 Query: 140 TVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLISAYVSGQVQIVGTGDFVAYALAEKTP 199 T+GVAR TF+D LT++ P S VIKRYEDNNG+I+AY++GQVQ+VGTGDFVA ALA K Sbjct: 153 TIGVARGTFQDSQLTETAPPSAVIKRYEDNNGMIAAYLAGQVQLVGTGDFVAVALAGKAA 212 Query: 200 NNKPLLKYIINVSTCYVGMNKGESALMAKVNEALTASKKSGELNGIVKKWLNVPLPEKMA 259 +NKP +KYII S CYVG+ K E ALMAKVN AL+ +KKS ELN IV+KWLNVPLP KMA Sbjct: 213 SNKPQMKYIIQESACYVGLLKEEPALMAKVNAALSQAKKSNELNAIVQKWLNVPLPGKMA 272 Query: 260 TTYQ 263 ++ Sbjct: 273 VQFE 276 >gb|ADU90705.1| putative amino acid transporter periplasmic ligand binding protein [Collimonas sp. MPS11E8] Length = 268 Score = 318 bits (814), Expect = 7e-85, Method: Composition-based stats. Identities = 174/264 (65%), Positives = 210/264 (79%), Gaps = 2/264 (0%) Query: 1 MKFVKTILALAALATLTGT--ACADNLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLD 58 M+ VKT+ LA L A AD+L+DIQK GV++I VPQDFAP+GSVT++L+LQGLD Sbjct: 4 MRIVKTLFLLALGLPLIAAPAAHADSLSDIQKRGVLRIAVPQDFAPFGSVTAELKLQGLD 63 Query: 59 IDVAKLVAKGLGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPY 118 IDVA LVAK +G+K +LVPV ++R+A+LQT K DL+ISTLGKNAEREKVI FSQ Y+PY Sbjct: 64 IDVAGLVAKNMGLKLQLVPVTSANRIAYLQTAKADLVISTLGKNAEREKVIAFSQPYSPY 123 Query: 119 NNSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLISAYVS 178 NNSVFG AIKV+GPADLA +T+GVAR TF+D L+++ P S IKRYEDNNG+ISAY++ Sbjct: 124 NNSVFGPTAIKVSGPADLAGKTIGVARGTFQDSQLSETAPPSATIKRYEDNNGMISAYLA 183 Query: 179 GQVQIVGTGDFVAYALAEKTPNNKPLLKYIINVSTCYVGMNKGESALMAKVNEALTASKK 238 GQVQ+VGTGDFVA ALA KT NKP +KYII S CYVG+ K E ALMA VN ALT +KK Sbjct: 184 GQVQLVGTGDFVAVALAAKTTGNKPQMKYIIQESACYVGLLKEEPALMAAVNAALTKAKK 243 Query: 239 SGELNGIVKKWLNVPLPEKMATTY 262 ELN IV KWLNVPLP+K+A + Sbjct: 244 DHELNTIVMKWLNVPLPDKLARQF 267 >ref|YP_001351726.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] gb|ABR90168.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] Length = 259 Score = 267 bits (683), Expect = 9e-70, Method: Composition-based stats. Identities = 142/259 (54%), Positives = 184/259 (71%), Gaps = 1/259 (0%) Query: 1 MKFVKTILALAALATL-TGTACADNLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDI 59 MK ++ L A A L T A AD L DIQK GV+++ VPQDF P+GSVT+D+ QGLDI Sbjct: 1 MKLSTILIGLMAGALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDI 60 Query: 60 DVAKLVAKGLGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYN 119 DVA L+AK LGVK EL+PV ++R+ +LQT K+DL+IS++GKN EREKVIDFS YAP+ Sbjct: 61 DVATLIAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFF 120 Query: 120 NSVFGVAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLISAYVSG 179 N VFG A KVA PADLA +T+GV R + EDL L+ P+S IKRYEDNNG IS+++S Sbjct: 121 NGVFGPADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSN 180 Query: 180 QVQIVGTGDFVAYALAEKTPNNKPLLKYIINVSTCYVGMNKGESALMAKVNEALTASKKS 239 QVQ+V TG+ +A A+ K P KP K++I S C +G+NKGE L+ KVN + +KK Sbjct: 181 QVQLVATGNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKD 240 Query: 240 GELNGIVKKWLNVPLPEKM 258 G LN + +KWL +PLP + Sbjct: 241 GSLNTLTEKWLGLPLPASL 259