BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2981.p (623 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774977.1| methyl-accepting chemotaxis transducer trans... 644 0.0 ref|YP_004232627.1| methyl-accepting chemotaxis sensory transduc... 472 e-130 ref|YP_968491.1| methyl-accepting chemotaxis sensory transducer ... 454 e-125 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 397 e-108 ref|YP_002912050.1| methyl-accepting chemotaxis protein [Burkhol... 394 e-107 >ref|YP_003774977.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] gb|ADJ63069.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 551 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 441/546 (80%), Positives = 481/546 (88%), Gaps = 9/546 (1%) Query: 77 AAHPAYHPRTGTPAGPVRLHCAIHMNPLRRLRLGPRLAAGFAALLLLLVIITFIGITRMS 136 A H A HP H MNPLRRLRLG RLA GFAALLLLLV+IT IGITRMS Sbjct: 14 ARHRAPHPTN---------HSGKLMNPLRRLRLGARLACGFAALLLLLVVITVIGITRMS 64 Query: 137 SLDTTSSRLSGAIYPKVNAAQKMQYLMMNIARSASNIIILEDDAQMNSNKQSIDKDLAEY 196 SLD TS++LS IYPKV+AAQKMQYLMMNIARSA NIIIL D+AQM SNKQ IDKDLAEY Sbjct: 65 SLDNTSTQLSAQIYPKVSAAQKMQYLMMNIARSARNIIILSDEAQMASNKQGIDKDLAEY 124 Query: 197 QKTLDYLRNSVSTDEGRSLVARADEQSKAYFAFTNDVVALGLKNQNVEGQRLLFGPRYKT 256 + L+ LR+S T+EGR ++ E SK YFAFTNDVVALGLKNQN EGQRLLFGPRYK+ Sbjct: 125 ARLLEQLRSSAMTEEGRQMINAVAEASKNYFAFTNDVVALGLKNQNEEGQRLLFGPRYKS 184 Query: 257 QGELLATLQQMVTRFEGQMREASEAAHATYVTSATILGVSAAVAVLLGLIAALAISRSIT 316 QGELLA L ++V R+EGQM++AS AHATYVTSATILG +A VA+LLGL+AAL I+RSIT Sbjct: 185 QGELLARLTELVQRYEGQMQQASAQAHATYVTSATILGGAAGVAILLGLLAALVITRSIT 244 Query: 317 VPMADAVDAARKVANGDLTKTITDSAPDETGDLLGALREMNTALVDIVSNVRTGADTIAT 376 VPMA+AVDAARKVANGDLTK I D++PDETG+LL ALREMN+ALVDIV+NVRTGADTIAT Sbjct: 245 VPMAEAVDAARKVANGDLTKDIRDNSPDETGELLVALREMNSALVDIVTNVRTGADTIAT 304 Query: 377 ASQEIAAGNQDLSARTEHQASSLEETASSMEELTSTVQQNSANARQAAEMAQAASNVAGQ 436 ASQEIAAGNQDLSARTEHQASSLEETASSMEELTSTVQQNSANARQAAEMAQ+AS +AGQ Sbjct: 305 ASQEIAAGNQDLSARTEHQASSLEETASSMEELTSTVQQNSANARQAAEMAQSASGIAGQ 364 Query: 437 GGAIVGDVVSTMDAIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 496 GG +VGDVV+TMD IDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 365 GGELVGDVVATMDDIDASARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 424 Query: 497 ATEVRSLAQRSAAAAKEIKVLIGDSVEKVDSGAQLVKKAGQTMDEIVKSVAQVNTIIGQI 556 ATEVRSLAQRSAAAAKEIKVLIGDSVEKVDSGA LVKKAGQTM EIVKSVAQVN +I QI Sbjct: 425 ATEVRSLAQRSAAAAKEIKVLIGDSVEKVDSGAHLVKKAGQTMQEIVKSVAQVNAVINQI 484 Query: 557 SAAGEEQRAGIEQVHQAVAQMDEVTQQNAALVEEAAAASRSMQGQAAELAEKVAVFRLPQ 616 S AGEEQRAGIEQV+QA+ QMDEVTQQNAALVE+AAAASR+MQ QAA+LAEKV++FRLP Sbjct: 485 SNAGEEQRAGIEQVNQAITQMDEVTQQNAALVEQAAAASRAMQTQAADLAEKVSIFRLPA 544 Query: 617 QARGVL 622 QAR + Sbjct: 545 QARSAM 550 >ref|YP_004232627.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44060.1| methyl-accepting chemotaxis sensory transducer [Acidovorax avenae subsp. avenae ATCC 19860] Length = 622 Score = 472 bits (1214), Expect = e-130, Method: Composition-based stats. Identities = 305/514 (59%), Positives = 386/514 (75%) Query: 101 MNPLRRLRLGPRLAAGFAALLLLLVIITFIGITRMSSLDTTSSRLSGAIYPKVNAAQKMQ 160 M LRRL LG RLA GF LLLLL I+T +GI RMSSLD TS +L+ Y K +A+Q+M Sbjct: 1 MQFLRRLTLGYRLALGFGLLLLLLAIVTGMGIARMSSLDHTSQQLTSEYYAKASASQRMS 60 Query: 161 YLMMNIARSASNIIILEDDAQMNSNKQSIDKDLAEYQKTLDYLRNSVSTDEGRSLVARAD 220 YL+++IAR+A NIIILED+AQM SNK IDK AE+ T+ LR ++ RSL+ + Sbjct: 61 YLVLDIARAARNIIILEDEAQMASNKAVIDKSTAEFADTIARLRQMETSPATRSLIDTTE 120 Query: 221 EQSKAYFAFTNDVVALGLKNQNVEGQRLLFGPRYKTQGELLATLQQMVTRFEGQMREASE 280 SK Y AFT DV LGL NQN+EGQ+LLFGPRYK QGELL L Q+V ++EG+M++AS Sbjct: 121 ASSKEYLAFTADVTRLGLSNQNIEGQKLLFGPRYKIQGELLGHLAQLVKQYEGEMQQASV 180 Query: 281 AAHATYVTSATILGVSAAVAVLLGLIAALAISRSITVPMADAVDAARKVANGDLTKTITD 340 AHAT+V SATILGV A +AVL+G++ A+ I+RSIT PM+ AV A+ VA GDLT+T+ D Sbjct: 181 QAHATFVQSATILGVVAVIAVLVGVVGAILITRSITGPMSQAVGLAQAVAEGDLTRTMDD 240 Query: 341 SAPDETGDLLGALREMNTALVDIVSNVRTGADTIATASQEIAAGNQDLSARTEHQASSLE 400 + DE LL +L+ MN L +V +R +D+IAT S +IA+GN DLS RTE QASSL+ Sbjct: 241 TGRDEAALLLHSLQTMNGNLTRVVHQIRQASDSIATGSSQIASGNADLSQRTESQASSLQ 300 Query: 401 ETASSMEELTSTVQQNSANARQAAEMAQAASNVAGQGGAIVGDVVSTMDAIDASARKIVD 460 +TA+SMEE+++T++QN+ AR A+++A AS A +GG ++G VV+TM I S+ KI D Sbjct: 301 QTAASMEEMSATIRQNADTARTASQLASTASQAASRGGDVMGQVVATMQDISGSSNKIAD 360 Query: 461 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGD 520 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LA RSA AAKEIK LIG Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAGRSAEAAKEIKNLIGQ 420 Query: 521 SVEKVDSGAQLVKKAGQTMDEIVKSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEV 580 SVEKV +G +LV +AG TM +IV+ V +V+ +I +I AA EQ GI QV+ AV+Q+D+ Sbjct: 421 SVEKVGTGTRLVDEAGATMSDIVQQVQRVSDLIAEIDAATREQSEGIGQVNSAVSQLDQA 480 Query: 581 TQQNAALVEEAAAASRSMQGQAAELAEKVAVFRL 614 TQQNAALVEE+AAA+ S+Q QA L E V VFRL Sbjct: 481 TQQNAALVEESAAAAGSLQQQAVRLTEAVGVFRL 514 >ref|YP_968491.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] gb|ABM30717.1| methyl-accepting chemotaxis sensory transducer [Acidovorax citrulli AAC00-1] Length = 622 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 313/518 (60%), Positives = 389/518 (75%) Query: 101 MNPLRRLRLGPRLAAGFAALLLLLVIITFIGITRMSSLDTTSSRLSGAIYPKVNAAQKMQ 160 M LRRL LG RLA GF LLLLL IIT +GI RMS+LD TS +++ +Y K NA+Q+M Sbjct: 1 MQFLRRLSLGSRLALGFGLLLLLLAIITGLGIARMSTLDHTSQQITTELYAKANASQRMG 60 Query: 161 YLMMNIARSASNIIILEDDAQMNSNKQSIDKDLAEYQKTLDYLRNSVSTDEGRSLVARAD 220 YL+++IAR+A NIIILED AQM SNK IDK+ AE+ T+ LR E RSL+ D Sbjct: 61 YLVLDIARAARNIIILEDQAQMASNKTVIDKNTAEFATTIAQLRQLEMAPEIRSLIDAVD 120 Query: 221 EQSKAYFAFTNDVVALGLKNQNVEGQRLLFGPRYKTQGELLATLQQMVTRFEGQMREASE 280 +SK Y AFT DV ALGL NQN+EGQ+LLFGPRYK+QGELLA L Q+V ++EG+MR+A+ Sbjct: 121 AKSKEYLAFTTDVTALGLSNQNLEGQKLLFGPRYKSQGELLALLAQLVKQYEGEMRQATA 180 Query: 281 AAHATYVTSATILGVSAAVAVLLGLIAALAISRSITVPMADAVDAARKVANGDLTKTITD 340 +AH T+V SAT+LGV A VAVL G+ A+ I+RSITVPMA AVD A VA GDLT+T+ D Sbjct: 181 SAHDTFVQSATVLGVVALVAVLAGIAGAVMITRSITVPMARAVDVAHAVAEGDLTRTVDD 240 Query: 341 SAPDETGDLLGALREMNTALVDIVSNVRTGADTIATASQEIAAGNQDLSARTEHQASSLE 400 S DE LL +L+ MN L +V +R +D+IAT S +IA+GN DLS RTE QASSL+ Sbjct: 241 SGRDEAALLLQSLQTMNGNLTRVVHQIRQASDSIATGSSQIASGNADLSQRTESQASSLQ 300 Query: 401 ETASSMEELTSTVQQNSANARQAAEMAQAASNVAGQGGAIVGDVVSTMDAIDASARKIVD 460 +TA+SMEE+++T++QN+ AR A+++A AS A +GG ++G VV+TM I S+ KI D Sbjct: 301 QTAASMEEMSATIRQNADTARTASQLASTASQAASRGGDVMGQVVATMQDISGSSSKIAD 360 Query: 461 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGD 520 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LA RSA AAKEIK LIG Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAGRSAEAAKEIKNLIGQ 420 Query: 521 SVEKVDSGAQLVKKAGQTMDEIVKSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEV 580 SVEKV +G +LV +AG TM +IV+ V +V+ +I +I AA EQ GI QV+ AV+Q+D+ Sbjct: 421 SVEKVGAGTRLVDEAGATMSDIVQQVQRVSDLIAEIDAATREQSEGIGQVNAAVSQLDQA 480 Query: 581 TQQNAALVEEAAAASRSMQGQAAELAEKVAVFRLPQQA 618 TQQNAALVEE+AAA+ S+Q QA L E V VFRL A Sbjct: 481 TQQNAALVEESAAAAGSLQQQAVRLTEAVGVFRLSGMA 518 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 255/511 (49%), Positives = 349/511 (68%) Query: 104 LRRLRLGPRLAAGFAALLLLLVIITFIGITRMSSLDTTSSRLSGAIYPKVNAAQKMQYLM 163 ++ L++G RL+ F ++++LLV++ + TR+ L+ S + G YPK A M+ + Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 164 MNIARSASNIIILEDDAQMNSNKQSIDKDLAEYQKTLDYLRNSVSTDEGRSLVARADEQS 223 IAR+ N +++ + A + + I K L L +V ++ GR +A Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 224 KAYFAFTNDVVALGLKNQNVEGQRLLFGPRYKTQGELLATLQQMVTRFEGQMREASEAAH 283 + +D + L E LLF Q LA++ +++ M+++ A+ Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 284 ATYVTSATILGVSAAVAVLLGLIAALAISRSITVPMADAVDAARKVANGDLTKTITDSAP 343 A + ++G+ + +AVL+ + A+ +RSIT P++ AV ARKVA+GDLT +I + Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 344 DETGDLLGALREMNTALVDIVSNVRTGADTIATASQEIAAGNQDLSARTEHQASSLEETA 403 DETG LL AL++MN L+ IV+ VR G DTIA+AS +IA GN DLS+RTE QASSLEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 404 SSMEELTSTVQQNSANARQAAEMAQAASNVAGQGGAIVGDVVSTMDAIDASARKIVDIIG 463 SSMEELTSTV+QN+ NARQ+ ++A +AS VA +GGA+V VV TM I+ SA+KIVDIIG Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 464 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGDSVE 523 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LIGDSV+ Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 524 KVDSGAQLVKKAGQTMDEIVKSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEVTQQ 583 KV G++LV AG TM E+V+SV +V I+ +I+AA +EQ GIEQ++QAV QMD+VTQQ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQ 480 Query: 584 NAALVEEAAAASRSMQGQAAELAEKVAVFRL 614 NAALVEEAAAA+ S+QGQA+ L++ V VF+L Sbjct: 481 NAALVEEAAAAAESLQGQASHLSQVVGVFKL 511 >ref|YP_002912050.1| methyl-accepting chemotaxis protein [Burkholderia glumae BGR1] gb|ACR29346.1| Methyl-accepting chemotaxis protein [Burkholderia glumae BGR1] Length = 561 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 254/518 (49%), Positives = 354/518 (68%) Query: 104 LRRLRLGPRLAAGFAALLLLLVIITFIGITRMSSLDTTSSRLSGAIYPKVNAAQKMQYLM 163 ++ L++G RLA F AL++L+VI +GI R+S+L T+++++ IY K A K+ Y + Sbjct: 1 MKNLKIGTRLALCFGALMVLVVITALMGIGRISALSATTTQITENIYVKAAATSKLGYAV 60 Query: 164 MNIARSASNIIILEDDAQMNSNKQSIDKDLAEYQKTLDYLRNSVSTDEGRSLVARADEQS 223 ++++R A N+I+ D + K+ D AE + + L ++ T R+L S Sbjct: 61 LDMSRLARNMILSNDAESLRGFKRDYDARKAEVSQLMATLDANIHTGADRTLFDAVQAAS 120 Query: 224 KAYFAFTNDVVALGLKNQNVEGQRLLFGPRYKTQGELLATLQQMVTRFEGQMREASEAAH 283 + +F F +DVVALG++NQ+ E +LLFGPRY TQG L TL+ + E +M E + A Sbjct: 121 EQFFPFMDDVVALGMQNQDSEAAKLLFGPRYATQGVYLKTLKALTQFQEARMHEGGQFAM 180 Query: 284 ATYVTSATILGVSAAVAVLLGLIAALAISRSITVPMADAVDAARKVANGDLTKTITDSAP 343 A S ++ V + +AV +G A ++RS+T P++++V+ A++VA DL++ I Sbjct: 181 AVRAQSIILMVVLSLLAVAIGFGLAWYVTRSVTRPISESVEVAKRVAANDLSQAIVVDRR 240 Query: 344 DETGDLLGALREMNTALVDIVSNVRTGADTIATASQEIAAGNQDLSARTEHQASSLEETA 403 DE G LL ALR M +L V +VRT A+++ATAS +IA GN DLS RTE QA+SLEETA Sbjct: 241 DEAGQLLEALRIMQHSLAATVVSVRTNAESVATASAQIAQGNTDLSRRTEEQAASLEETA 300 Query: 404 SSMEELTSTVQQNSANARQAAEMAQAASNVAGQGGAIVGDVVSTMDAIDASARKIVDIIG 463 +SMEELT+TV+QN+ NA+Q ++A AS +A +G A+V VV TM I S+ +I II Sbjct: 301 ASMEELTATVKQNTENAQQGNQLANRASEIAARGDAVVDRVVGTMAQISTSSTQISGIIT 360 Query: 464 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKVLIGDSVE 523 VI+ IAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA+AAKEIK LI S Sbjct: 361 VIESIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSASAAKEIKDLITGSSA 420 Query: 524 KVDSGAQLVKKAGQTMDEIVKSVAQVNTIIGQISAAGEEQRAGIEQVHQAVAQMDEVTQQ 583 V+SG+ LV +AG TM EI+++V +V ++ +ISAA EQR GIEQV+QAV+QMDEVTQQ Sbjct: 421 HVESGSLLVSEAGTTMKEIMQAVRRVKDLMEEISAASLEQRTGIEQVNQAVSQMDEVTQQ 480 Query: 584 NAALVEEAAAASRSMQGQAAELAEKVAVFRLPQQARGV 621 NAALVEEA+AA++SM Q+ EL + +F L +A G+ Sbjct: 481 NAALVEEASAAAQSMAVQSTELRRSMGMFVLATEATGM 518