BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2979.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03575126.1| conserved hypothetical protein [Burkholderia ...    60   1e-07
ref|YP_001580096.1| hypothetical protein Bmul_1912 [Burkholderia...    60   1e-07
ref|YP_004360305.1| hypothetical protein bgla_1g17020 [Burkholde...    59   3e-07
ref|YP_001764678.1| hypothetical protein Bcenmc03_1381 [Burkhold...    59   3e-07
ref|YP_002230541.1| hypothetical protein BCAL1411 [Burkholderia ...    58   4e-07

>ref|ZP_03575126.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
 ref|ZP_03577796.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 ref|ZP_03587943.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gb|EED97680.1| conserved hypothetical protein [Burkholderia multivorans CGD1]
 gb|EEE08066.1| conserved hypothetical protein [Burkholderia multivorans CGD2]
 gb|EEE10584.1| conserved hypothetical protein [Burkholderia multivorans CGD2M]
          Length = 127

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 30  AHAQANLDFFSNTAVADLKKEQINSLYAAITASLDAGVNGKTSQW-TDGPKPTTTAKITP 88
           AHAQ+NL F ++T +    K    SL  A+  + DAG +G+T+ W + G +    AK+TP
Sbjct: 25  AHAQSNLGFLNDTPITYFSKADAASLTKAVVHARDAGKDGETTTWQSSGGRTQIEAKLTP 84

Query: 89  A-FEQSTPPCANVDLVVTSKRGTEPLKLRYCKNSAGKWAL 127
           A  ++    C  V   + +K  T  LK  YC+ +AGKW L
Sbjct: 85  ATLDKDGKHCREVTTEIAAKGQTMTLKPVYCQTAAGKWQL 124


>ref|YP_001580096.1| hypothetical protein Bmul_1912 [Burkholderia multivorans ATCC
           17616]
 ref|YP_001945801.1| surface antigen [Burkholderia multivorans ATCC 17616]
 gb|ABX15599.1| conserved hypothetical protein [Burkholderia multivorans ATCC
           17616]
 dbj|BAG43265.1| surface antigen [Burkholderia multivorans ATCC 17616]
          Length = 127

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 30  AHAQANLDFFSNTAVADLKKEQINSLYAAITASLDAGVNGKTSQWTD-GPKPTTTAKITP 88
           AHAQ+NL F ++T +    K    SL  A+  + DAG +G+T+ W + G +    AK+TP
Sbjct: 25  AHAQSNLGFLNDTPITYFSKADAASLTKAVVHARDAGKDGETTTWQNSGGRTQIEAKLTP 84

Query: 89  A-FEQSTPPCANVDLVVTSKRGTEPLKLRYCKNSAGKWAL 127
           A  ++    C  V   + +K  T  LK  YC+  AGKW L
Sbjct: 85  ATLDKDGKHCREVTTEIAAKGQTMTLKPVYCQTGAGKWQL 124


>ref|YP_004360305.1| hypothetical protein bgla_1g17020 [Burkholderia gladioli BSR3]
 gb|AEA60349.1| hypothetical protein bgla_1g17020 [Burkholderia gladioli BSR3]
          Length = 126

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)

Query: 30  AHAQANLDFFSNTAVADLKKEQINSLYAAITASLDAGVNGKTSQWT-DGPKPTTTAKITP 88
           A AQ+NL+F S+T +A   K    SL  A+  + D G +G+TS W+ DG      AK+TP
Sbjct: 24  AQAQSNLNFLSDTPMAYFSKADRASLTKAVYQARDEGKDGETSTWSNDGRGTPIEAKLTP 83

Query: 89  AF-EQSTPPCANVDLVVTSKRGTEPLKLRYCKNSAGKW 125
              EQ    C  + + + +K  +  L+ RYCK +AG W
Sbjct: 84  TTAEQDGRSCREIAVEINAKGQSMKLRPRYCKTAAGNW 121


>ref|YP_001764678.1| hypothetical protein Bcenmc03_1381 [Burkholderia cenocepacia MC0-3]
 gb|ACA90556.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 128

 Score = 58.5 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)

Query: 30  AHAQANLDFFSNTAVADLKKEQINSLYAAITASLDAGVNGKTSQW-TDGPKPTTTAKITP 88
           AHAQ NL+F ++T ++   K    SL  A+  + D G +G+T+ W ++G      AK+TP
Sbjct: 26  AHAQNNLNFLNDTPISYFSKTDRASLSRAVVQARDEGKDGETTTWQSNGRGTQIDAKLTP 85

Query: 89  A-FEQSTPPCANVDLVVTSKRGTEPLKLRYCKNSAGKWAL 127
           +  E     C  +   +T+K  T  LK  YCK +AGKW L
Sbjct: 86  STTETDGKTCREIATEITAKGQTMTLKPVYCKTAAGKWQL 125


>ref|YP_002230541.1| hypothetical protein BCAL1411 [Burkholderia cenocepacia J2315]
 emb|CAR51709.1| putative exported protein [Burkholderia cenocepacia J2315]
          Length = 128

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 2/100 (2%)

Query: 30  AHAQANLDFFSNTAVADLKKEQINSLYAAITASLDAGVNGKTSQWTDGPKPTTT-AKITP 88
           AHAQ NL+F ++T ++   K    SL  A+  + D G +G+T+ W    + T   AK+TP
Sbjct: 26  AHAQNNLNFLNDTPISYFSKTDRASLSKAVVQARDEGKDGETTTWQSSGRGTQIDAKLTP 85

Query: 89  A-FEQSTPPCANVDLVVTSKRGTEPLKLRYCKNSAGKWAL 127
           +  E     C  V   +T+K  T  LK  YCK +AGKW L
Sbjct: 86  STTEADGKTCREVATEITAKGQTMTLKPVYCKTAAGKWQL 125