BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2978.p         (133 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum...   234   3e-60
ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum...   219   2e-55
ref|YP_003775118.1| chemotaxis response regulator receiver domai...   190   6e-47
ref|ZP_08274848.1| Chemotaxis regulator - transmits chemorecepto...   166   8e-40
ref|YP_932964.1| chemotaxis response regulator [Azoarcus sp. BH7...   163   1e-38

>ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63068.1| chemotaxis regulator transmits chemoreceptor signals to flagellar
           motor components protein [Herbaspirillum seropedicae
           SmR1]
          Length = 133

 Score =  234 bits (597), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 126/133 (94%), Positives = 131/133 (98%)

Query: 1   MADTDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDW 60
           MA T+QHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGS+ALKILESGASNITFVLTDW
Sbjct: 1   MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60

Query: 61  NMPVMDGLTLLKKIRSTPSLAHLPVLMITAEAKKENIVTAAQEGADGYIVKPFNATTLKE 120
           NMPVMDGLTLLKKIRSTP+L+HLPVLMITAEAKKENIV AAQEGADGYIVKPFNATTLKE
Sbjct: 61  NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120

Query: 121 KIEKILARRAHMK 133
           KIEKILARRAHM+
Sbjct: 121 KIEKILARRAHMQ 133


>ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63477.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 135

 Score =  219 bits (557), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 117/132 (88%), Positives = 125/132 (94%)

Query: 1   MADTDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDW 60
           MA  DQ+FLVVDDFSTMRRIVSGLLKELEYTKIVEADDGS+ALKILE+GA  +TFVLTDW
Sbjct: 1   MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60

Query: 61  NMPVMDGLTLLKKIRSTPSLAHLPVLMITAEAKKENIVTAAQEGADGYIVKPFNATTLKE 120
           NMPVMDGLTLLKKIR+TPS+AHLPVLMITAEAKKENIV AAQ GADGYIVKPFNA TLK+
Sbjct: 61  NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120

Query: 121 KIEKILARRAHM 132
           KIEKILARRAH+
Sbjct: 121 KIEKILARRAHL 132


>ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ63210.1| chemotaxis response regulator receiver domain protein
           [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score =  190 bits (482), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 98/129 (75%), Positives = 110/129 (85%)

Query: 4   TDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDWNMP 63
           TDQHFLVVDDFSTMRRI+ GLLKELEY K+ +ADDG++A KILESGA  I+FV+TDWNMP
Sbjct: 3   TDQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMP 62

Query: 64  VMDGLTLLKKIRSTPSLAHLPVLMITAEAKKENIVTAAQEGADGYIVKPFNATTLKEKIE 123
            MDGL LLKKIR TP L  LPVLM++AEAKKENIV AA+ GADGYIVKPFNA TL +KI 
Sbjct: 63  GMDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKIS 122

Query: 124 KILARRAHM 132
           KIL RR+ M
Sbjct: 123 KILQRRSSM 131


>ref|ZP_08274848.1| Chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF31677.1| Chemotaxis regulator - transmits chemoreceptor signals to
           flagelllar motor components CheY [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 152

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 84/130 (64%), Positives = 109/130 (83%), Gaps = 3/130 (2%)

Query: 4   TDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASN---ITFVLTDW 60
           ++ +FLVVDDFSTMRRI+SGLLKE+ ++KI EA+DG+ AL++L+S  ++   I FV+TDW
Sbjct: 20  SELNFLVVDDFSTMRRIISGLLKEIGHSKIHEAEDGAAALRLLQSAQTHGVPIDFVITDW 79

Query: 61  NMPVMDGLTLLKKIRSTPSLAHLPVLMITAEAKKENIVTAAQEGADGYIVKPFNATTLKE 120
           NMPVMDGL LLK+IR  P+L HLPVLM+TAE+KKENI+ AA  GADGYIVKPF A TLKE
Sbjct: 80  NMPVMDGLELLKRIRLDPALNHLPVLMVTAESKKENIIAAAHAGADGYIVKPFTAATLKE 139

Query: 121 KIEKILARRA 130
           K++KI+ ++ 
Sbjct: 140 KLDKIMLKKG 149


>ref|YP_932964.1| chemotaxis response regulator [Azoarcus sp. BH72]
 emb|CAL94077.1| chemotaxis response regulator [Azoarcus sp. BH72]
          Length = 133

 Score =  163 bits (412), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/128 (69%), Positives = 98/128 (76%), Gaps = 2/128 (1%)

Query: 1   MADTDQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSTALKILESGASNITFVLTDW 60
           MAD    FLVVDDFSTMRRIV  LLKEL YT + EA+DG+ AL+ L S   +  FV+TDW
Sbjct: 1   MADPKMKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGAVALQKLNSAPFD--FVVTDW 58

Query: 61  NMPVMDGLTLLKKIRSTPSLAHLPVLMITAEAKKENIVTAAQEGADGYIVKPFNATTLKE 120
           NMP MDGLTLL+ IR TP L HLPVLMITAEAKKENI+ AAQ GA GYIVKPF A TL E
Sbjct: 59  NMPNMDGLTLLQTIRQTPQLKHLPVLMITAEAKKENIIAAAQAGASGYIVKPFTAATLAE 118

Query: 121 KIEKILAR 128
           K+EKI  R
Sbjct: 119 KLEKIFER 126