BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2975.p         (166 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EGP48173.1| two component response regulator protein [Achromo...   108   3e-22
ref|YP_003777135.1| two component response regulator protein [He...   102   3e-20
gb|EFV84176.1| hypothetical protein HMPREF0005_02918 [Achromobac...    98   4e-19
gb|EFV85650.1| hypothetical protein HMPREF0005_05055 [Achromobac...    94   6e-18
gb|EGP43761.1| response regulator 9 [Achromobacter xylosoxidans ...    92   2e-17

>gb|EGP48173.1| two component response regulator protein [Achromobacter
           xylosoxidans AXX-A]
          Length = 235

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 2/159 (1%)

Query: 2   LGIVVIGEQLSEDAQEKALHDGADYILHKPIRQGLLLATIRSFLRRLRILHAPAAGSAEA 61
           +GI+V+ + +   AQ ++L DGAD+ L KPI+  LL AT+ +  RRL +   P   S   
Sbjct: 73  MGIIVLTDNVRMPAQLQSLSDGADHYLIKPIQLALLAATVSALERRL-VTATPGPVSRGH 131

Query: 62  WTLYRRRGTLVSPHNERVALSERECAVLTTLFLSPHFPVSAEHLMHALNITAEIIDPHRI 121
           WTL  +   L S + E+++L+ +E  V+ TL  SP FPVS + +   L     I D HRI
Sbjct: 132 WTLDVQARQLRSSNGEQLSLTAKESIVMATLIQSPKFPVSHKRMSQILGYPEVIYDQHRI 191

Query: 122 DTIIYRLRKKLGQLAHARFEIRNIYGRGFICVAMKESAV 160
           D ++YR+RKKL  L  A  +IRNIY  G + V M+ES +
Sbjct: 192 DALLYRVRKKLATLRDAPMQIRNIYSEGSLLV-MRESMI 229


>ref|YP_003777135.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ65227.1| two component response regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 236

 Score =  102 bits (253), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%)

Query: 2   LGIVVIGEQLSEDAQEKALHDGADYILHKPIRQGLLLATIRSFLRRLRILHAPAAGSAEA 61
           +GIVV+      + + + + DGADY L +P++   + AT+ +  RR++ +   ++  +E 
Sbjct: 73  MGIVVLTAAQRMEERIRCMSDGADYYLARPVKLEEVSATLTALARRMKTVPHQSSPQSEK 132

Query: 62  WTLYRRRGTLVSPHNERVALSERECAVLTTLFLSPHFPVSAEHLMHALNITAEIIDPHRI 121
           W   RR G L S     +  +++E   L  L  SP++PVS   L   L    E  D HRI
Sbjct: 133 WAFNRRSGRLSSNGVTALQFTDKESTALAALLQSPNYPVSHGQLFDLLRSGGEEYDAHRI 192

Query: 122 DTIIYRLRKKLGQLAHARFEIRNIYGRGFICVAMKES 158
           D +IYR+R+KL  L  +  +IRNIYG GF+ +    S
Sbjct: 193 DALIYRVRQKLRSLEESPMQIRNIYGEGFLMLRRNSS 229


>gb|EFV84176.1| hypothetical protein HMPREF0005_02918 [Achromobacter xylosoxidans
           C54]
          Length = 235

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 2   LGIVVIGEQLSEDAQEKALHDGADYILHKPIRQGLLLATIRSFLRRLRILHAPAAGSAEA 61
           +GIVV+      + Q + + DG D+ L+KP++  LL  T+ +  RRL +  + A     A
Sbjct: 73  MGIVVLAASPRINTQLRGMSDGVDHYLNKPVQLPLLAVTLSALERRL-VTSSAAPSRDGA 131

Query: 62  WTLYRRRGTLVSPHNERVALSERECAVLTTLFLSPHFPVSAEHLMHALNITAEIIDPHRI 121
           WTL      L S   ++V L+ +E  VL +L  SP FP+S E +   L     I D HRI
Sbjct: 132 WTLDVESRELRSSDGQQVDLTAKEAIVLASLIQSPKFPISHERMSQILGYPEIIFDKHRI 191

Query: 122 DTIIYRLRKKLGQLAHARFEIRNIYGRGFICV 153
           D ++YR+RKKLG +     +IRNIY  G + V
Sbjct: 192 DALLYRVRKKLGTIRGTPMQIRNIYAEGSLLV 223


>gb|EFV85650.1| hypothetical protein HMPREF0005_05055 [Achromobacter xylosoxidans
           C54]
          Length = 243

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%)

Query: 4   IVVIGEQLSEDAQEKALHDGADYILHKPIRQGLLLATIRSFLRRLRILHA--PAAGSAEA 61
           I++ G  LSED +   L  GAD+ L KP+    L AT+ S  RRLR++ A  P A SAE 
Sbjct: 82  IMLTGRLLSED-KVSGLSLGADHYLTKPVNLAELGATLVSLSRRLRVVPAVDPEAPSAEI 140

Query: 62  WTLYRRRGTLVSPHNERVALSERECAVLTTLFLSPHFPVSAEHLMHALNITAEIIDPHRI 121
           W     R  LVSP    V +++ E  ++  L  +   P+S   L+ AL  +AE  D HR+
Sbjct: 141 WRFDPARRMLVSPKRVHVDITDTESRLIGALIQAAPLPLSRGRLVEALGASAEAYDTHRL 200

Query: 122 DTIIYRLRKKLGQLAHARFEIRNIYGRGFIC 152
           D  ++RLR+KL   A A   IR +YG G++C
Sbjct: 201 DAHMHRLRRKLRAQAGADMGIRTVYGVGYVC 231


>gb|EGP43761.1| response regulator 9 [Achromobacter xylosoxidans AXX-A]
          Length = 239

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 3/151 (1%)

Query: 4   IVVIGEQLSEDAQEKALHDGADYILHKPIRQGLLLATIRSFLRRLRILHA--PAAGSAEA 61
           I++ G  LSED +   L  GAD+ L KP+    L AT+ S  RRLR++ A  P A SAE 
Sbjct: 78  IMLTGRLLSED-KVSGLSLGADHYLTKPVNLAELGATLVSLSRRLRVVPAASPEAPSAEI 136

Query: 62  WTLYRRRGTLVSPHNERVALSERECAVLTTLFLSPHFPVSAEHLMHALNITAEIIDPHRI 121
           W     R  LVSP    V +++ E  ++  L  +   P+S   L+ AL  +AE  D HR+
Sbjct: 137 WRFDPARRMLVSPKRIHVDITDTESRLIGALIQAAPLPLSRGRLVEALGASAEAYDTHRL 196

Query: 122 DTIIYRLRKKLGQLAHARFEIRNIYGRGFIC 152
           D  ++RLR+KL   A     IR +YG G++C
Sbjct: 197 DAHMHRLRRKLRAQAGGDMGIRTVYGVGYVC 227