BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2974.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspiri... 157 8e-37 gb|EGP47429.1| signaling protein [Achromobacter xylosoxidans AXX-A] 152 6e-35 gb|EFV85826.1| signaling protein [Achromobacter xylosoxidans C54] 151 6e-35 ref|ZP_04944108.1| Diguanylate cyclase (GGDEF domain) [Burkholde... 150 2e-34 ref|ZP_06689994.1| GGDEF domain protein [Achromobacter piechaudi... 149 2e-34 >ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64790.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 91/194 (46%), Positives = 123/194 (63%), Gaps = 3/194 (1%) Query: 28 VASLGLAGTLGALLASARGRCRELHRQLREARAANDGLRQQALYDGLTGLPNRSLLEQRI 87 +A+L +A L A R +L R L AAN+ L Q L+D LT LPNR+LLE R+ Sbjct: 228 LAALTIALLTSVLDARLESRTAKLARSLA---AANEELTQMVLHDQLTRLPNRTLLEDRL 284 Query: 88 AAAIARAERAQGSFALLFLDLDGFKLVNDRHGHAAGDLLLLQIGERLGASLRHADTIARI 147 AI +A R QG FAL+F+DLDGFK +ND GH GD LL+++ +RL +S R DT+AR+ Sbjct: 285 NQAINKAAREQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVAQRLTSSSRANDTVARL 344 Query: 148 GGDEFVVLTDIVASGDIRIIRDKLTQALAAPFQIGHTMLTVSASLGHARYPDDGNSMDAL 207 GGDEFV+L D+ D + +KL +A+ PF++ L VSAS+G A YP+DG + L Sbjct: 345 GGDEFVILVDLNTPEDAMGVAEKLVEAVNQPFKVDQHELRVSASVGIAIYPEDGATRHDL 404 Query: 208 LACADQGMYHLKRA 221 + AD MYH KR+ Sbjct: 405 VINADAAMYHTKRS 418 >gb|EGP47429.1| signaling protein [Achromobacter xylosoxidans AXX-A] Length = 660 Score = 152 bits (383), Expect = 6e-35, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 5/194 (2%) Query: 28 VASLGLAGTLGALLASARGRCRELHRQLREARAANDGLRQQALYDGLTGLPNRSLLEQRI 87 ++ L +A + L R L L EA N+ L Q AL+D LT LPNR LLE R+ Sbjct: 199 LSVLAIALVVAVLDNRLEARTSALASSLAEA---NEELVQLALHDTLTKLPNRILLEDRL 255 Query: 88 AAAIARAERAQGSFALLFLDLDGFKLVNDRHGHAAGDLLLLQIGERLGASLRHADTIARI 147 AI A R +G FA+LF DLDGFK VND +GH GD LL+ + +R+ +LR DT+AR+ Sbjct: 256 EQAIESASRRKGYFAVLFFDLDGFKAVNDAYGHHTGDALLIDLAQRIRQTLRTHDTVARL 315 Query: 148 GGDEFVVLTDIVASGDIRIIRDKLTQALAAPFQI-GHTMLTVSASLGHARYPDDGNSMDA 206 GGDEF+VL+++V D + D+L +A+A P + GH +L V++S+G A YP+DG A Sbjct: 316 GGDEFIVLSEVVEPTDAANVADRLIEAIARPVMVYGHEVL-VTSSVGIAIYPNDGEDTHA 374 Query: 207 LLACADQGMYHLKR 220 LL AD MYH KR Sbjct: 375 LLTNADAAMYHAKR 388 >gb|EFV85826.1| signaling protein [Achromobacter xylosoxidans C54] Length = 687 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 90/194 (46%), Positives = 121/194 (62%), Gaps = 5/194 (2%) Query: 28 VASLGLAGTLGALLASARGRCRELHRQLREARAANDGLRQQALYDGLTGLPNRSLLEQRI 87 ++ L +A + L R L L EA N+ L Q AL+D LT LPNR LLE R+ Sbjct: 226 LSVLAIALVVAVLDNRLEARTSALASSLAEA---NEELVQLALHDTLTKLPNRILLEDRL 282 Query: 88 AAAIARAERAQGSFALLFLDLDGFKLVNDRHGHAAGDLLLLQIGERLGASLRHADTIARI 147 AI A R +G FA+LF DLDGFK VND +GH GD LL+ + +R+ +LR DT+AR+ Sbjct: 283 EQAIESASRRKGYFAVLFFDLDGFKAVNDAYGHHTGDALLIDLAQRIRQTLRTQDTVARL 342 Query: 148 GGDEFVVLTDIVASGDIRIIRDKLTQALAAPFQI-GHTMLTVSASLGHARYPDDGNSMDA 206 GGDEF+VL+++V D + D+L +A+A P + GH +L V++S+G A YP+DG A Sbjct: 343 GGDEFIVLSEVVEPTDAANVADRLIEAIARPVMVYGHEVL-VTSSVGIAIYPNDGEDTHA 401 Query: 207 LLACADQGMYHLKR 220 LL AD MYH KR Sbjct: 402 LLTNADAAMYHAKR 415 >ref|ZP_04944108.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] gb|EAY67279.1| Diguanylate cyclase (GGDEF domain) [Burkholderia cenocepacia PC184] Length = 693 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 82/160 (51%), Positives = 103/160 (64%) Query: 60 AANDGLRQQALYDGLTGLPNRSLLEQRIAAAIARAERAQGSFALLFLDLDGFKLVNDRHG 119 AAN L AL+D LT LPNR LLE RI AI A+R GSFAL+F+DLDGFK VND +G Sbjct: 254 AANQELTYLALHDNLTKLPNRVLLEDRIDQAIQGADREHGSFALMFMDLDGFKAVNDAYG 313 Query: 120 HAAGDLLLLQIGERLGASLRHADTIARIGGDEFVVLTDIVASGDIRIIRDKLTQALAAPF 179 H GDLLL+ + R+GA+LR DTIAR+GGDEFV+ + D + DK+ + PF Sbjct: 314 HHVGDLLLVDVARRIGANLRSQDTIARLGGDEFVLAVAVDEPADAADVADKILAVIRKPF 373 Query: 180 QIGHTMLTVSASLGHARYPDDGNSMDALLACADQGMYHLK 219 ++ L VSAS+G A YP +G+ L+ AD MYH K Sbjct: 374 RVSEHELRVSASIGIALYPGNGSDFRDLMTNADAAMYHAK 413 >ref|ZP_06689994.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] gb|EFF73096.1| GGDEF domain protein [Achromobacter piechaudii ATCC 43553] Length = 687 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 88/194 (45%), Positives = 121/194 (62%), Gaps = 5/194 (2%) Query: 28 VASLGLAGTLGALLASARGRCRELHRQLREARAANDGLRQQALYDGLTGLPNRSLLEQRI 87 ++ L +A + L R L L EA N+ L Q AL+D LT LPNR LLE R+ Sbjct: 226 LSVLAIALVVAVLDNRLEARTSALASSLAEA---NEELVQLALHDTLTKLPNRILLEDRM 282 Query: 88 AAAIARAERAQGSFALLFLDLDGFKLVNDRHGHAAGDLLLLQIGERLGASLRHADTIARI 147 AI A R +G FA+LF DLDGFK VND +GH GD LL+ + +R+ +LR DT+AR+ Sbjct: 283 EQAIESANRHKGYFAVLFFDLDGFKAVNDAYGHHTGDALLIDLAQRIRQALRTQDTVARL 342 Query: 148 GGDEFVVLTDIVASGDIRIIRDKLTQALAAPFQI-GHTMLTVSASLGHARYPDDGNSMDA 206 GGDEF+VL++++ D + D+L +A+A P + GH +L V++S+G A YP+DG + Sbjct: 343 GGDEFIVLSEVIEPTDAANVADRLIEAIARPVMVYGHEVL-VTSSVGIAVYPNDGEDTHS 401 Query: 207 LLACADQGMYHLKR 220 LL AD MYH KR Sbjct: 402 LLTNADAAMYHAKR 415