BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2971.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774972.1| transcription regulator protein [Herbaspiril...   200   5e-50
ref|YP_001416208.1| MarR family transcriptional regulator [Xanth...   124   6e-27
ref|YP_001237468.1| MarR family transcriptional regulator [Brady...   123   8e-27
ref|YP_001208149.1| MarR family transcriptional regulator [Brady...   115   3e-24
ref|NP_768971.1| transcriptional regulator [Bradyrhizobium japon...   114   5e-24

>ref|YP_003774972.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63064.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 156

 Score =  200 bits (509), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 117/141 (82%), Positives = 129/141 (91%)

Query: 1   MKLQDFFPYQLAQLAEAVSRSVAEVYADRFGLSRDEWRILAALAEEGQMQASDLVPHTSL 60
           MKLQDFFPYQLAQLAEAVSRSVA VYADRFGL+RDEWRILAALAE+GQMQ SDL PH SL
Sbjct: 13  MKLQDFFPYQLAQLAEAVSRSVATVYADRFGLTRDEWRILAALAEQGQMQGSDLGPHASL 72

Query: 61  DKMQVSRALARMEQDGLVLRQPSPDDARARIVKPTAQGRKLYRKIVPMVEEREAHLLQAL 120
           DKMQVSRALARME+ GL++R+PSP DARARIVKPTAQ RKLYRKIVPMVE+REA LL+AL
Sbjct: 73  DKMQVSRALARMEEAGLIVREPSPHDARARIVKPTAQARKLYRKIVPMVEQREAFLLEAL 132

Query: 121 SCSERETLMRAMAKIRKRALR 141
           S +ERE LM AM K+R+RAL+
Sbjct: 133 SKTEREALMSAMQKVRERALQ 153


>ref|YP_001416208.1| MarR family transcriptional regulator [Xanthobacter autotrophicus
           Py2]
 gb|ABS66551.1| transcriptional regulator, MarR family [Xanthobacter autotrophicus
           Py2]
          Length = 154

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/137 (51%), Positives = 97/137 (70%)

Query: 3   LQDFFPYQLAQLAEAVSRSVAEVYADRFGLSRDEWRILAALAEEGQMQASDLVPHTSLDK 62
           L DFFPY+LA LAE VS++VA++Y DRF ++R EWR+LAAL     M A D+  +++LDK
Sbjct: 11  LADFFPYRLAVLAEHVSQAVAQLYGDRFQITRAEWRVLAALGANNGMAAKDIGAYSTLDK 70

Query: 63  MQVSRALARMEQDGLVLRQPSPDDARARIVKPTAQGRKLYRKIVPMVEEREAHLLQALSC 122
           MQVSRA+AR+E+ GL+ R     D RA+I+  T  GR L++KIVP+ + RE +LL+ L  
Sbjct: 71  MQVSRAVARLEEAGLITRATDDADRRAKILTLTGSGRALFQKIVPLAQAREDYLLEDLDP 130

Query: 123 SERETLMRAMAKIRKRA 139
            ER  L +AMAK+  RA
Sbjct: 131 KERAVLDKAMAKVLARA 147


>ref|YP_001237468.1| MarR family transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ33562.1| transcriptional regulator, MarR family [Bradyrhizobium sp. BTAi1]
          Length = 168

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 77/145 (53%), Positives = 98/145 (67%)

Query: 1   MKLQDFFPYQLAQLAEAVSRSVAEVYADRFGLSRDEWRILAALAEEGQMQASDLVPHTSL 60
           +KLQ++FPY+LA+LAE VS +VAEVYADRF LSR EWRILAAL E+ ++    +   T+L
Sbjct: 18  LKLQEYFPYRLARLAEQVSLAVAEVYADRFALSRQEWRILAALGEQPRLPTKQIGRLTTL 77

Query: 61  DKMQVSRALARMEQDGLVLRQPSPDDARARIVKPTAQGRKLYRKIVPMVEEREAHLLQAL 120
           DKM VSRA+  +E  G+V R   P+D R RIV  TA GR LYR+IVP    RE+ LL  L
Sbjct: 78  DKMNVSRAMQSLEARGIVSRSRDPEDGRERIVTLTAAGRGLYRRIVPYALARESDLLGVL 137

Query: 121 SCSERETLMRAMAKIRKRALRVMDD 145
           S +E  TL   + K+   A R +DD
Sbjct: 138 SAAELATLDTVIDKLLAAAERAVDD 162


>ref|YP_001208149.1| MarR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL79934.1| putative transcriptional regulatory protein, MarR family
           [Bradyrhizobium sp. ORS 278]
          Length = 164

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 74/135 (54%), Positives = 92/135 (68%)

Query: 1   MKLQDFFPYQLAQLAEAVSRSVAEVYADRFGLSRDEWRILAALAEEGQMQASDLVPHTSL 60
           ++LQ +FPY+LA+LAE VS +VAEVYADRF LSR EWRILAAL E+ ++    +   T+L
Sbjct: 22  LRLQRYFPYRLARLAEQVSLAVAEVYADRFALSRQEWRILAALGEQPRLPTKQIGRLTTL 81

Query: 61  DKMQVSRALARMEQDGLVLRQPSPDDARARIVKPTAQGRKLYRKIVPMVEEREAHLLQAL 120
           DKM VSRA+  +E  G+V R   P+D R RIV  TA GR LYRKIVP    REA LL AL
Sbjct: 82  DKMNVSRAMQSLEARGIVSRSRDPEDGRERIVTLTAAGRALYRKIVPHALAREADLLDAL 141

Query: 121 SCSERETLMRAMAKI 135
           +  E  TL   + K+
Sbjct: 142 TREEVATLNAVIDKL 156


>ref|NP_768971.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47596.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 162

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 70/135 (51%), Positives = 92/135 (68%)

Query: 1   MKLQDFFPYQLAQLAEAVSRSVAEVYADRFGLSRDEWRILAALAEEGQMQASDLVPHTSL 60
           + LQ +FPY+LA+LAE VS +VAEVY++RF L+R EWR+LA L    Q+   ++ P T+L
Sbjct: 23  LDLQQYFPYRLARLAEQVSLAVAEVYSERFALTRQEWRVLAILGARTQIATKEIGPLTTL 82

Query: 61  DKMQVSRALARMEQDGLVLRQPSPDDARARIVKPTAQGRKLYRKIVPMVEEREAHLLQAL 120
           DKMQVSRA+  +E  G+V R+ + DD R  IV  T+ GR L+RKIVP   ERE  LL  L
Sbjct: 83  DKMQVSRAVQGLETRGIVSRKHASDDRRELIVSLTSAGRALFRKIVPFALERETRLLAVL 142

Query: 121 SCSERETLMRAMAKI 135
           +  E E L RAM K+
Sbjct: 143 TSEEVEVLDRAMRKL 157