BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2969.p (212 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774957.1| response regulator containing a CheY-like re... 204 1e-50 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 175 5e-42 ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium bacula... 165 4e-39 ref|YP_284816.1| response regulator receiver modulated diguanyla... 164 6e-39 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 162 4e-38 >ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63049.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 111/201 (55%), Positives = 145/201 (72%) Query: 1 MVAQVALRERAQAEAVRAQAELETMFELLQKQSRRDGLTGAINRRHFDELLEAEAARFAR 60 +V VA RERA+A+A+ A+ ELE+++ L+ QS++DGLT NRR+FD L AE AR R Sbjct: 321 LVVLVAGRERAEAQAIAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNR 380 Query: 61 VGGAFSLLMIDVDHFKQYNDHYGHVVGDVCLRNIAAAISSAAQREIDTVARYGGEEFSVL 120 G + SL+MIDVDHFKQ+ND YGH GDVCLR +AAAIS+ A+R+ D VARYGGEEF+V+ Sbjct: 381 TGESLSLMMIDVDHFKQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVI 440 Query: 121 LPECGSAGAIVVAERIGAAVRAMGIPHATSEKGWVTVSIGITSITSAEGFSYQPRELVES 180 LP C A +A R+ AVR + I H S G VT+S+G+ S+ S + +PREL++S Sbjct: 441 LPNCHPGSAQGLAHRVVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDS 500 Query: 181 ADKALYQAKDTGRDRAVFREF 201 AD ALY+AK+ GRDRAV R F Sbjct: 501 ADGALYRAKEEGRDRAVQRPF 521 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 95/196 (48%), Positives = 129/196 (65%), Gaps = 1/196 (0%) Query: 1 MVAQVALRERAQAEAVRAQAELETMFELLQKQSRRDGLTGAINRRHFDELLEAEAARFAR 60 +V Q L+ R +AE +A+ LET+ + L + DGLTG NRR FD L++E +R AR Sbjct: 306 LVRQFQLQTRTEAELRQARDALETLNKTLNTLAMEDGLTGLANRRQFDVALDSEYSRAAR 365 Query: 61 VGGAFSLLMIDVDHFKQYNDHYGHVVGDVCLRNIAAAISS-AAQREIDTVARYGGEEFSV 119 +L+M+DVD FKQYND YGH GD CL+ I I+ A++R D ARYGGEE +V Sbjct: 366 NASTLALIMMDVDCFKQYNDIYGHAAGDECLQTIGRTIARVASRRPGDLAARYGGEELAV 425 Query: 120 LLPECGSAGAIVVAERIGAAVRAMGIPHATSEKGWVTVSIGITSITSAEGFSYQPRELVE 179 LLP AGA+++AERI +AVR + I HA + G+VT+S G+ +++ G QP+EL+ Sbjct: 426 LLPNTDVAGAVMLAERIRSAVRELKIEHAGTADGFVTLSAGVDALSPQAGIGGQPKELIR 485 Query: 180 SADKALYQAKDTGRDR 195 SADKALY AK GR+R Sbjct: 486 SADKALYAAKSGGRNR 501 >ref|YP_003157981.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] gb|ACU89565.1| diguanylate cyclase [Desulfomicrobium baculatum DSM 4028] Length = 339 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 88/192 (45%), Positives = 121/192 (63%), Gaps = 2/192 (1%) Query: 3 AQVALRERAQAEAVRAQAELETMFELLQKQSRRDGLTGAINRRHFDELLEAEAARFARVG 62 A V L E+ +A+ ++ ELE L + S DGLTG NRR FD L E +R AR G Sbjct: 140 ALVHLNEQLEAKILQRTRELEEANHRLSELSLTDGLTGIANRRRFDAALAEEWSRSARTG 199 Query: 63 GAFSLLMIDVDHFKQYNDHYGHVVGDVCLRNIAAAISSAAQREIDTVARYGGEEFSVLLP 122 +L+M+D+DHFK+YNDHYGH GD CLR +A + S+A+R+ D V+RYGGEEF ++LP Sbjct: 200 STLALIMLDIDHFKKYNDHYGHQQGDDCLRRVAEVLRSSARRQGDLVSRYGGEEFCMILP 259 Query: 123 ECGSAGAIVVAERIGAAVRAMGIPHATSEKGWVTVSIGITSITSAEGFSYQPRELVESAD 182 + GA +AER+ V M +PH S+ G VT S+G+ + + S P EL+ AD Sbjct: 260 DTALPGAFEIAERLRREVENMDMPHVLSDVGRVTASMGVAASMPCKAMS--PAELLRRAD 317 Query: 183 KALYQAKDTGRD 194 ++LYQAK GR+ Sbjct: 318 ESLYQAKSEGRN 329 >ref|YP_284816.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] gb|AAZ46346.1| response regulator receiver modulated diguanylate cyclase [Dechloromonas aromatica RCB] Length = 313 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 93/188 (49%), Positives = 122/188 (64%), Gaps = 3/188 (1%) Query: 12 QAEAVRAQAELETMFELLQKQSRRDGLTGAINRRHFDELLEAEAARFARVGGAFSLLMID 71 +A + +L+ + L + S D LTG NRR+FDE + E R R + +LLM D Sbjct: 125 RASLLAVTRKLDAANQELIRISSTDSLTGVANRRYFDEAMSIEWRRARRHSNSIALLMCD 184 Query: 72 VDHFKQYNDHYGHVVGDVCLRNIAAAISSAAQREIDTVARYGGEEFSVLLPECGSAGAIV 131 +D+FK YND YGH GD CLR IAAAIS +R DTVARYGGE+F+V+LPE GA++ Sbjct: 185 IDYFKLYNDTYGHQAGDECLRKIAAAISRHTERPSDTVARYGGEKFAVILPETSIGGALM 244 Query: 132 VAERIGAAVRAMGIPHATSEKGWVTVSIGITSITSAEGFSYQPRELVESADKALYQAKDT 191 VAE+I A + + I HA+S G V +SIGI S +A GF P +L+ +ADKALY+AK Sbjct: 245 VAEKIRQATKELNITHASSPTGQVGLSIGIAS--AAPGFDNPPDDLILAADKALYRAKKE 302 Query: 192 GRDRAVFR 199 GRDR V+R Sbjct: 303 GRDR-VYR 309 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 89/196 (45%), Positives = 125/196 (63%), Gaps = 1/196 (0%) Query: 1 MVAQVALRERAQAEAVRAQAELETMFELLQKQSRRDGLTGAINRRHFDELLEAEAARFAR 60 +V Q+ +RERAQ+E A+ +LE L + D LTG NRR FD L+ E AR R Sbjct: 315 LVHQITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMR 374 Query: 61 VGGAFSLLMIDVDHFKQYNDHYGHVVGDVCLRNIAAAISSAAQREIDTVARYGGEEFSVL 120 + +L+M+DVDHFK+YND YGH GD CL+ I+ + +A R D VARYGGEEF +L Sbjct: 375 NQTSLALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVIL 434 Query: 121 LPECGSAGAIVVAERIGAAVRAMGIPHATSEKGWVTVSIGITSITSAEGFSYQPRELVES 180 LP AGA VAER+ A++A+ + HA + G VT S+GI ++ P++LV + Sbjct: 435 LPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQRQ-QNSPQQLVHA 493 Query: 181 ADKALYQAKDTGRDRA 196 AD+ALY+AK+ GR+++ Sbjct: 494 ADQALYKAKEDGRNQS 509