BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2968.p (363 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 264 1e-68 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 236 6e-60 ref|YP_003774957.1| response regulator containing a CheY-like re... 231 2e-58 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 226 5e-57 ref|ZP_06639766.1| diguanylate cyclase [Serratia odorifera DSM 4... 220 4e-55 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 127/292 (43%), Positives = 185/292 (63%), Gaps = 13/292 (4%) Query: 17 PIKVASRAAKG-------------FVAAVCIIIIILEAWTSWHERTAEMEESFRATANMA 63 PI +A R A+ FV VC+ ++ +E W SW+ R E+ E+ AT+N+A Sbjct: 4 PIAIAPRPARPALKSLPITYLATVFVVLVCVSLMSVEVWRSWNARNIELHETEIATSNLA 63 Query: 64 LALSQHADQALDEVDIVLKAVMEQVPGKPRAVAGNERLHNFLVRTVGEVPQLAGLFIYDE 123 ALSQHAD + E D VL ++E++ A ERLH L+ + E+PQL L IYDE Sbjct: 64 RALSQHADDTIKEADTVLVGLVERLEVDGTGSASLERLHALLIHHIAELPQLNDLSIYDE 123 Query: 124 KGKWLASSQPVLETRFNNSDRDYFRHHQTHRLDSPFIGKPIRSKSTGHWVLTMSRRINKP 183 G WLA+++ NNSDR YFR+H++H P+IG P+RS+STG W++T+SRR N Sbjct: 124 TGLWLANARTGPVPLVNNSDRQYFRYHRSHPGRGPYIGPPVRSRSTGAWIVTVSRRYNHA 183 Query: 184 DGSFGGVALATLDIQFFERFYHKFDIGQQGAILFGTNEGTVLYRRPLLTDSMGKSLAQSP 243 DGSF G+ L T++I +F+++Y FDIG+ G+I N+GT+L RRP++ D++GK+L+ P Sbjct: 184 DGSFAGLVLGTINIDYFKKYYDSFDIGRAGSIFLSLNDGTMLVRRPMMDDTIGKNLSNYP 243 Query: 244 LFRQYISTADAGQVTIRSRQDDVTRIHGFKHLGNYPLFVIVAVSENEVLQSW 295 ++R Y S + G ++S QD + R+ ++HL YPLFV VA S+NEVL W Sbjct: 244 IYRDYASRSAVGTAIMKSDQDGIERLIAYRHLQQYPLFVTVARSKNEVLAEW 295 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 236 bits (601), Expect = 6e-60, Method: Composition-based stats. Identities = 114/271 (42%), Positives = 171/271 (63%) Query: 27 GFVAAVCIIIIILEAWTSWHERTAEMEESFRATANMALALSQHADQALDEVDIVLKAVME 86 FVA VC+ ++ ++ W SW RT ++++ AT+N++ A++Q AD + + D VL ++E Sbjct: 13 AFVAVVCLSLLAIDFWNSWEARTDQLQQMNVATSNLSRAMAQQADDTIKKADTVLVGMVE 72 Query: 87 QVPGKPRAVAGNERLHNFLVRTVGEVPQLAGLFIYDEKGKWLASSQPVLETRFNNSDRDY 146 +V + RL L V E+PQL GL IYD+ G W+A+S+P NN+DR+Y Sbjct: 73 RVEHDGTDPSDVARLRQLLALRVAELPQLDGLHIYDQDGNWIANSRPTRPENLNNADREY 132 Query: 147 FRHHQTHRLDSPFIGKPIRSKSTGHWVLTMSRRINKPDGSFGGVALATLDIQFFERFYHK 206 F H+TH P IG P++S+++G ++ +SRRIN DGSF GVALAT+ + FF RFY Sbjct: 133 FAFHRTHAERGPHIGIPVQSRTSGRLLVPVSRRINHADGSFAGVALATIHVDFFSRFYDS 192 Query: 207 FDIGQQGAILFGTNEGTVLYRRPLLTDSMGKSLAQSPLFRQYISTADAGQVTIRSRQDDV 266 DIGQ GA+ GT++ RRP D +G+++ ++ LFR Y + G I+S QD V Sbjct: 193 LDIGQAGAVALVLENGTMMTRRPYSPDMVGRNMLETQLFRSYAAHGPVGTAYIKSAQDGV 252 Query: 267 TRIHGFKHLGNYPLFVIVAVSENEVLQSWTR 297 TR++ F+ L NYPLFV A+S++E+L +W R Sbjct: 253 TRLNSFRRLDNYPLFVSAALSKDEILANWWR 283 >ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63049.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 115/268 (42%), Positives = 174/268 (64%) Query: 39 LEAWTSWHERTAEMEESFRATANMALALSQHADQALDEVDIVLKAVMEQVPGKPRAVAGN 98 LEAWT+W R + ES +N+ALAL QHA+Q++ E DIVL+ V E + + R+ + Sbjct: 40 LEAWTAWRAREVALSESTTDASNVALALIQHAEQSIKEADIVLETVQEHLDHEDRSASAR 99 Query: 99 ERLHNFLVRTVGEVPQLAGLFIYDEKGKWLASSQPVLETRFNNSDRDYFRHHQTHRLDSP 158 R H+F++R+V +PQLA L + DE+G+ +ASSQ + + DYF++HQ R D P Sbjct: 100 IRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDRP 159 Query: 159 FIGKPIRSKSTGHWVLTMSRRINKPDGSFGGVALATLDIQFFERFYHKFDIGQQGAILFG 218 FIG+P+RS TG LT+SRRIN DGSF GV +A +D+ +F+R+Y +F+IG G ILFG Sbjct: 160 FIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFG 219 Query: 219 TNEGTVLYRRPLLTDSMGKSLAQSPLFRQYISTADAGQVTIRSRQDDVTRIHGFKHLGNY 278 G+++ RRPLL D +S A S R+++ A G +RS +D V RI F+ Y Sbjct: 220 LTGGSLILRRPLLADMTDRSPAMSEALRKHMEQARRGSFAMRSERDGVERISCFQQGEAY 279 Query: 279 PLFVIVAVSENEVLQSWTRHLIARALKI 306 P+F +VA++++++L+ W+RH+ R + + Sbjct: 280 PIFTVVALAKDDILEDWSRHVWVRGIGV 307 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 108/268 (40%), Positives = 170/268 (63%) Query: 28 FVAAVCIIIIILEAWTSWHERTAEMEESFRATANMALALSQHADQALDEVDIVLKAVMEQ 87 F+ V ++++ + A +WH R ++ E+ AT+NMA AL+QHA+ + +D +L ++ E Sbjct: 23 FIVFVTVLLVCILALNAWHARAEKIRETETATSNMAKALAQHAEDTVGGIDNLLVSMEEM 82 Query: 88 VPGKPRAVAGNERLHNFLVRTVGEVPQLAGLFIYDEKGKWLASSQPVLETRFNNSDRDYF 147 + ER++ FL + V ++P L GLF+YDE G+W+A+SQ L T NN+DR+YF Sbjct: 83 LERDSWNPLQLERMNQFLRQRVTDLPLLHGLFVYDEHGQWVANSQETLRTDLNNADREYF 142 Query: 148 RHHQTHRLDSPFIGKPIRSKSTGHWVLTMSRRINKPDGSFGGVALATLDIQFFERFYHKF 207 H+TH P +G PIRS+STG W++T+SRR+ DG+F GV LAT+++Q+F +Y F Sbjct: 143 IFHRTHTDSGPHLGPPIRSRSTGDWIITVSRRLEHADGNFAGVVLATINMQYFSAYYKDF 202 Query: 208 DIGQQGAILFGTNEGTVLYRRPLLTDSMGKSLAQSPLFRQYISTADAGQVTIRSRQDDVT 267 DIG+ GAI+ T+ GT+L RRP +G ++ P+++ Y +G + + D Sbjct: 203 DIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQFYKRQGSSGTAILTANIDRTE 262 Query: 268 RIHGFKHLGNYPLFVIVAVSENEVLQSW 295 RI+ ++HL YPL + VA S +EVL+SW Sbjct: 263 RIYSYRHLDRYPLLIAVAQSTDEVLESW 290 >ref|ZP_06639766.1| diguanylate cyclase [Serratia odorifera DSM 4582] gb|EFE95411.1| diguanylate cyclase [Serratia odorifera DSM 4582] Length = 519 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 108/271 (39%), Positives = 161/271 (59%) Query: 25 AKGFVAAVCIIIIILEAWTSWHERTAEMEESFRATANMALALSQHADQALDEVDIVLKAV 84 A FV V + +I+L W WH R +++ + ++N+A +L+QHAD +VD L + Sbjct: 27 AAVFVIIVAVTLIVLNTWQIWHARQIDLKTAENTSSNLARSLAQHADDTFKQVDNNLLEL 86 Query: 85 MEQVPGKPRAVAGNERLHNFLVRTVGEVPQLAGLFIYDEKGKWLASSQPVLETRFNNSDR 144 E++ R A RLH + V PQL G FIYD +G+W+A+S + T NNSDR Sbjct: 87 TERLDHDGRGPAQRSRLHKVMQAQVENAPQLHGSFIYDAQGRWIATSFGNVPTLANNSDR 146 Query: 145 DYFRHHQTHRLDSPFIGKPIRSKSTGHWVLTMSRRINKPDGSFGGVALATLDIQFFERFY 204 YF++HQTH D P+IG+ IRS++TG V+ +SRR+ PDGSFGGV LATL + +F +FY Sbjct: 147 AYFQYHQTHDDDQPYIGQVIRSRTTGDLVIPISRRLKNPDGSFGGVVLATLYVDYFRQFY 206 Query: 205 HKFDIGQQGAILFGTNEGTVLYRRPLLTDSMGKSLAQSPLFRQYISTADAGQVTIRSRQD 264 F + ++ +GT+LYRRP S+GK+++ LF + + + G T+ SR D Sbjct: 207 DDFALDNDASLSLLLADGTILYRRPYSPSSIGKNISHGILFSRILPHSTFGNATLTSRYD 266 Query: 265 DVTRIHGFKHLGNYPLFVIVAVSENEVLQSW 295 V RI+G+ + YPL + +S N+ L W Sbjct: 267 KVERIYGYSRVERYPLVIAAGLSRNDALAGW 297