BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2964.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774966.1| transmembrane protein [Herbaspirillum serope... 360 6e-98 ref|YP_004753999.1| hypothetical protein CFU_3352 [Collimonas fu... 304 4e-81 ref|YP_004293532.1| hypothetical protein NAL212_0425 [Nitrosomon... 295 4e-78 ref|YP_410717.1| hypothetical protein Nmul_A0016 [Nitrosospira m... 293 1e-77 ref|YP_004693412.1| hypothetical protein Nit79A3_0106 [Nitrosomo... 290 8e-77 >ref|YP_003774966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63058.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 360 bits (924), Expect = 6e-98, Method: Composition-based stats. Identities = 195/209 (93%), Positives = 197/209 (94%), Gaps = 7/209 (3%) Query: 1 MKNSSPQ---PPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 57 MK SPQ PPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG Sbjct: 1 MKTPSPQAPKPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 60 Query: 58 SASSLDHILDAVAIPGATRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 117 +ASSLDHILDAVAIPGA RPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM Sbjct: 61 NASSLDHILDAVAIPGAIRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 120 Query: 118 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 177 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA Sbjct: 121 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 180 Query: 178 FLLSAMAIAYCDRLMVHP----SEPSDKP 202 FL SAMAIAYCDRLM+HP EPSDKP Sbjct: 181 FLFSAMAIAYCDRLMIHPGAHGDEPSDKP 209 >ref|YP_004753999.1| hypothetical protein CFU_3352 [Collimonas fungivorans Ter331] gb|AEK63176.1| hypothetical protein CFU_3352 [Collimonas fungivorans Ter331] Length = 204 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 162/204 (79%), Positives = 174/204 (85%), Gaps = 1/204 (0%) Query: 1 MKNSSPQPPRK-IGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGSA 59 M N P P+K IG+LPNLIFMSRWLQLPLYLGLILAQCVYV+HFWVEL DLIGA G+A Sbjct: 1 MSNMQPSAPKKAIGVLPNLIFMSRWLQLPLYLGLILAQCVYVFHFWVELTDLIGAVFGNA 60 Query: 60 SSLDHILDAVAIPGATRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNL 119 +SL+HILD V I GA RP KL E TIMLVVL LIDVVMISNLLIMVIVGGYETFVSRMNL Sbjct: 61 ASLNHILDVVTIDGAVRPTKLTEATIMLVVLGLIDVVMISNLLIMVIVGGYETFVSRMNL 120 Query: 120 EGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFL 179 E HPDQPEWLSHVNASVLKVKLA AIIGISSIHLLKTFINAN YD KTL+AQTGIHI FL Sbjct: 121 ESHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLKTFINANAYDVKTLLAQTGIHITFL 180 Query: 180 LSAMAIAYCDRLMVHPSEPSDKPH 203 LSA+AIA+CDR+M ++ H Sbjct: 181 LSALAIAWCDRIMTATQNQANGEH 204 >ref|YP_004293532.1| hypothetical protein NAL212_0425 [Nitrosomonas sp. AL212] gb|ADZ25370.1| Uncharacterized protein family UPF0114 [Nitrosomonas sp. AL212] Length = 206 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 153/200 (76%), Positives = 172/200 (86%), Gaps = 1/200 (0%) Query: 1 MKNSSP-QPPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGSA 59 M+N+ P + ++ + +F++RWLQLPLYLGL+LAQC+YV+HFWVELVDLIGA MG+ Sbjct: 4 MENNLPGRSIKRTHPIAQFLFLTRWLQLPLYLGLVLAQCIYVFHFWVELVDLIGAVMGNQ 63 Query: 60 SSLDHILDAVAIPGATRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNL 119 S+L HILD V I GA RPEKL E IMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNL Sbjct: 64 SALQHILDTVTIKGADRPEKLTETAIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNL 123 Query: 120 EGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFL 179 EGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTLIAQTGIH+AFL Sbjct: 124 EGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDEKTLIAQTGIHMAFL 183 Query: 180 LSAMAIAYCDRLMVHPSEPS 199 LSAMAIAYCDRL+ + S Sbjct: 184 LSAMAIAYCDRLISQTGQQS 203 >ref|YP_410717.1| hypothetical protein Nmul_A0016 [Nitrosospira multiformis ATCC 25196] gb|ABB73325.1| Uncharacterized protein UPF0114 [Nitrosospira multiformis ATCC 25196] Length = 215 Score = 293 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 153/198 (77%), Positives = 168/198 (84%), Gaps = 5/198 (2%) Query: 3 NSSPQP-----PRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMG 57 N +P P RKI L IF +RWLQLPLYLGLILAQCVYVYHFWVEL+DLIGA MG Sbjct: 11 NDTPLPVYSGRSRKIQPLAYFIFTTRWLQLPLYLGLILAQCVYVYHFWVELLDLIGAVMG 70 Query: 58 SASSLDHILDAVAIPGATRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRM 117 + +L+H LDAV+I GA P+K+ E TIMLVVL LIDVVMISNLLIMVI+GGYETFVSRM Sbjct: 71 NKEALEHTLDAVSIEGAAPPKKIGETTIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRM 130 Query: 118 NLEGHPDQPEWLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIA 177 NLEGHPDQPEWLSHVNA+VLKVKL+TAIIGISSIHLLKTFINAN YD KT++AQTGIHI Sbjct: 131 NLEGHPDQPEWLSHVNATVLKVKLSTAIIGISSIHLLKTFINANAYDEKTILAQTGIHIV 190 Query: 178 FLLSAMAIAYCDRLMVHP 195 FLLSA+AIAY DRLM P Sbjct: 191 FLLSAIAIAYSDRLMSRP 208 >ref|YP_004693412.1| hypothetical protein Nit79A3_0106 [Nitrosomonas sp. Is79A3] gb|AEJ00013.1| UPF0114 protein yqhA [Nitrosomonas sp. Is79A3] Length = 208 Score = 290 bits (742), Expect = 8e-77, Method: Composition-based stats. Identities = 148/192 (77%), Positives = 168/192 (87%) Query: 8 PPRKIGILPNLIFMSRWLQLPLYLGLILAQCVYVYHFWVELVDLIGAAMGSASSLDHILD 67 P R+I + + +F++RWLQLPLYLGL+LAQCVYV+HFWVEL DLIGA +G+ ++L HILD Sbjct: 14 PLRRIHPIAHFLFLTRWLQLPLYLGLVLAQCVYVFHFWVELSDLIGAVLGNQNALQHILD 73 Query: 68 AVAIPGATRPEKLNEQTIMLVVLALIDVVMISNLLIMVIVGGYETFVSRMNLEGHPDQPE 127 V I GA RP KL E IMLVVL LIDVVMISNLLIMVI+GGYETFVSRMNLEGHPDQPE Sbjct: 74 TVTIKGAERPTKLTETAIMLVVLGLIDVVMISNLLIMVIIGGYETFVSRMNLEGHPDQPE 133 Query: 128 WLSHVNASVLKVKLATAIIGISSIHLLKTFINANLYDAKTLIAQTGIHIAFLLSAMAIAY 187 WLSHVNASVLKVKLATAIIGISSIHLLKTFINA+ YD KTL+AQTGIH+AFLLSA+AIAY Sbjct: 134 WLSHVNASVLKVKLATAIIGISSIHLLKTFINASAYDEKTLLAQTGIHMAFLLSAIAIAY 193 Query: 188 CDRLMVHPSEPS 199 CDR++ S+ S Sbjct: 194 CDRIITQTSQQS 205