BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2963.p (513 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774965.1| fumarate hydratase [Herbaspirillum seropedic... 1021 0.0 ref|YP_004754000.1| fumarate hydratase class I, aerobic [Collimo... 962 0.0 ref|YP_001352570.1| fumarate hydratase, class I [Janthinobacteri... 927 0.0 ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] >g... 919 0.0 ref|YP_001020579.1| fumarase [Methylibium petroleiphilum PM1] >g... 882 0.0 >ref|YP_003774965.1| fumarate hydratase [Herbaspirillum seropedicae SmR1] emb|CAM32536.1| Fumarate hydratase protein [Herbaspirillum seropedicae] gb|ADJ63057.1| fumarate hydratase protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 1021 bits (2641), Expect = 0.0, Method: Composition-based stats. Identities = 511/513 (99%), Positives = 513/513 (100%) Query: 1 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE Sbjct: 1 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 Query: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF Sbjct: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM Sbjct: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKQVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 GAGWCPPGMLGIGIGGTAEKAMLMAK+VLMEDIDMYELLKRGPQNKTEELRIELYEKVNA Sbjct: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKEVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL Sbjct: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 Query: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK Sbjct: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER Sbjct: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV Sbjct: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPVTTA 513 DANG+SVHNTGPAEWKEKIAQSVSLSKIPVTTA Sbjct: 481 DANGVSVHNTGPAEWKEKIAQSVSLSKIPVTTA 513 >ref|YP_004754000.1| fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] gb|AEK63177.1| Fumarate hydratase class I, aerobic [Collimonas fungivorans Ter331] Length = 518 Score = 962 bits (2488), Expect = 0.0, Method: Composition-based stats. Identities = 476/511 (93%), Positives = 499/511 (97%), Gaps = 1/511 (0%) Query: 1 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 +T IKQ+DLIESVAAALQYISYYHP DYIQHLARAYE EQSPAAKDAIAQILTNSRMCAE Sbjct: 7 LTTIKQEDLIESVAAALQYISYYHPVDYIQHLARAYEQEQSPAAKDAIAQILTNSRMCAE 66 Query: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 GKRPICQDTGIVNVFLKIGM VRFEGF GSI DAVNEGVRRGY +PDN+LRASIVADPQF Sbjct: 67 GKRPICQDTGIVNVFLKIGMDVRFEGFKGSITDAVNEGVRRGYLNPDNMLRASIVADPQF 126 Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 ERKNTKDNTPAV+HMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSD+LVDWV+KTVPTM Sbjct: 127 ERKNTKDNTPAVVHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDSLVDWVMKTVPTM 186 Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKQVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 GAGWCPPGMLGIGIGGTAE+AMLMAKQVLMEDIDMY+LLKRGPQNKTEELRIEL++KVNA Sbjct: 187 GAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYDLLKRGPQNKTEELRIELFQKVNA 246 Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL Sbjct: 247 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 306 Query: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 S+WPEVHWV DTEKSKRV+L+TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQ+MLAK Sbjct: 307 SEWPEVHWVPDTEKSKRVDLNTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQEMLAK 366 Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER Sbjct: 367 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 426 Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 GP AIE+IK+HKSAYLMAVGG+AYLVSKAIKSA+VLGFADLGMEAIYEFDVKDMPVTVAV Sbjct: 427 GPVAIESIKQHKSAYLMAVGGAAYLVSKAIKSAQVLGFADLGMEAIYEFDVKDMPVTVAV 486 Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPVT 511 D+NGISVHNTGP EW+EKIA + +LSKIPVT Sbjct: 487 DSNGISVHNTGPKEWQEKIAHA-ALSKIPVT 516 >ref|YP_001352570.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] gb|ABR89454.1| fumarate hydratase, class I [Janthinobacterium sp. Marseille] Length = 512 Score = 927 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 452/511 (88%), Positives = 487/511 (95%), Gaps = 1/511 (0%) Query: 1 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 MTIIKQDDLIESVAAALQYISYYHP DYIQHLARAYE EQSPAAKDAIAQILTNSRMCAE Sbjct: 1 MTIIKQDDLIESVAAALQYISYYHPQDYIQHLARAYEAEQSPAAKDAIAQILTNSRMCAE 60 Query: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 GKRP+CQDTGIVNVFLK+GMGVRFEGFSGS+ DAVNEGVR+ Y+HPDN LRASIVADP F Sbjct: 61 GKRPLCQDTGIVNVFLKVGMGVRFEGFSGSVTDAVNEGVRQAYNHPDNTLRASIVADPHF 120 Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 ERKNTKDNTPAV+H+ELVPGNTVDVQ+AAKGGGSENKTKFVMLNPSD+LVDWV++TVP M Sbjct: 121 ERKNTKDNTPAVVHVELVPGNTVDVQVAAKGGGSENKTKFVMLNPSDSLVDWVMQTVPLM 180 Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKQVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 GAGWCPPGMLGIGIGGTAE+AMLMAKQVLMEDIDMYEL KRGPQNKTEELRIEL +K+N+ Sbjct: 181 GAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYELKKRGPQNKTEELRIELCDKINS 240 Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRH HFVLDGSGP Y++PP+L Sbjct: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHAHFVLDGSGPVYLDPPAL 300 Query: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 SDWP+V+W+ DTE+SKRV+L+TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK Sbjct: 301 SDWPKVNWMPDTEQSKRVDLNTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 GEKLPVDFTNR+IYYVGPVDPVRDEVVGPAGPTTATRMDKFT+MML QTGLISM+GK+ER Sbjct: 361 GEKLPVDFTNRIIYYVGPVDPVRDEVVGPAGPTTATRMDKFTEMMLAQTGLISMVGKAER 420 Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 GP AIEAIKKHKSAYLMAVGG+AYLVSKAIK AKVLGF DLGMEAIYEFDV+DMPVTVAV Sbjct: 421 GPTAIEAIKKHKSAYLMAVGGAAYLVSKAIKKAKVLGFEDLGMEAIYEFDVQDMPVTVAV 480 Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPVT 511 D+ G SVH TGP EWKEKI + + L+ IPV+ Sbjct: 481 DSTGTSVHTTGPKEWKEKI-EKIRLNDIPVS 510 >ref|YP_001099230.1| fumarase A [Herminiimonas arsenicoxydans] emb|CAL61103.1| putative fumarate hydratase class I, aerobic (Fumarase) (FumA-like) [Herminiimonas arsenicoxydans] Length = 512 Score = 919 bits (2376), Expect = 0.0, Method: Composition-based stats. Identities = 449/510 (88%), Positives = 485/510 (95%), Gaps = 1/510 (0%) Query: 1 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 MTIIKQDDLIESVAAALQYISYYHP DYIQHLARAYE EQSPAAKDAIAQILTNSRMCAE Sbjct: 1 MTIIKQDDLIESVAAALQYISYYHPQDYIQHLARAYEAEQSPAAKDAIAQILTNSRMCAE 60 Query: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 GKRPICQDTGIVNVFLKIGM V+ EGF+GSIADAVNEGVR+ Y+HPDN LRASIVADP F Sbjct: 61 GKRPICQDTGIVNVFLKIGMSVKLEGFTGSIADAVNEGVRQAYNHPDNKLRASIVADPHF 120 Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 ERKNTKDNTPAV+HMELVPGNT+DVQ+AAKGGGSENK+KFVMLNPSD+LVDWV++TVP M Sbjct: 121 ERKNTKDNTPAVVHMELVPGNTIDVQVAAKGGGSENKSKFVMLNPSDSLVDWVMQTVPQM 180 Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKQVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 GAGWCPPGMLGIGIGGTAE+AMLMAKQVLMEDIDMYEL KRGPQNKTEELRIEL +K+NA Sbjct: 181 GAGWCPPGMLGIGIGGTAERAMLMAKQVLMEDIDMYELKKRGPQNKTEELRIELCDKINA 240 Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRH HFVLDGSGP Y++PPSL Sbjct: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHAHFVLDGSGPVYLDPPSL 300 Query: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 SDWP+V+W +TE SKRV+L+TLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK Sbjct: 301 SDWPDVNWAPNTELSKRVDLNTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 GEKLPVDFTNR+IYYVGPVDPVRDEVVGPAGPTTATRMDKFT+MML QTGLISM+GK+ER Sbjct: 361 GEKLPVDFTNRIIYYVGPVDPVRDEVVGPAGPTTATRMDKFTEMMLAQTGLISMVGKAER 420 Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 GP AIE+IKKH+SAYLMAVGG+AYLVSKAIK+AKV+GFADLGMEAIYEFDV DMPVTVAV Sbjct: 421 GPTAIESIKKHQSAYLMAVGGAAYLVSKAIKTAKVVGFADLGMEAIYEFDVTDMPVTVAV 480 Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPV 510 D+ G SVHN GP EWK+KI + + L++IPV Sbjct: 481 DSTGTSVHNIGPKEWKDKI-EKIRLNEIPV 509 >ref|YP_001020579.1| fumarase [Methylibium petroleiphilum PM1] gb|ABM94344.1| fumarase [Methylibium petroleiphilum PM1] Length = 507 Score = 882 bits (2279), Expect = 0.0, Method: Composition-based stats. Identities = 437/513 (85%), Positives = 467/513 (91%), Gaps = 6/513 (1%) Query: 1 MTIIKQDDLIESVAAALQYISYYHPADYIQHLARAYETEQSPAAKDAIAQILTNSRMCAE 60 MT I+ DL++S+AAALQYISYYHPADYI HLARAYE EQSPAAKDAIAQILTNS+MCAE Sbjct: 1 MTTIRHADLVDSIAAALQYISYYHPADYITHLARAYEQEQSPAAKDAIAQILTNSKMCAE 60 Query: 61 GKRPICQDTGIVNVFLKIGMGVRFEGFSGSIADAVNEGVRRGYSHPDNVLRASIVADPQF 120 G+RPICQDTGIVNVFLKIGM VRFEGF+GSI DAVNEGVRRGY +P+N LRASIVADP F Sbjct: 61 GRRPICQDTGIVNVFLKIGMDVRFEGFAGSIEDAVNEGVRRGYLNPENTLRASIVADPHF 120 Query: 121 ERKNTKDNTPAVIHMELVPGNTVDVQIAAKGGGSENKTKFVMLNPSDNLVDWVLKTVPTM 180 ERKNTKDNTPAV+HM +VPGNTVDVQ+AAKGGGSENK+KFVMLNPSD+LVDWVLKTVPTM Sbjct: 121 ERKNTKDNTPAVVHMTVVPGNTVDVQVAAKGGGSENKSKFVMLNPSDSLVDWVLKTVPTM 180 Query: 181 GAGWCPPGMLGIGIGGTAEKAMLMAKQVLMEDIDMYELLKRGPQNKTEELRIELYEKVNA 240 GAGWCPPGMLGIGIGG+AEKAMLMAK+ LM DIDMYEL +RGPQNK EELRIEL +K+NA Sbjct: 181 GAGWCPPGMLGIGIGGSAEKAMLMAKESLMGDIDMYELKQRGPQNKLEELRIELCDKINA 240 Query: 241 LGIGAQGLGGLTTVLDVKIMMHPTHAASKPVAMIPNCAATRHGHFVLDGSGPAYMEPPSL 300 LGIGAQGLGGLTTVLDVKI PTHAASKPVAMIPNCAATRH HFVLDGSGP+Y+EPPSL Sbjct: 241 LGIGAQGLGGLTTVLDVKISTFPTHAASKPVAMIPNCAATRHAHFVLDGSGPSYLEPPSL 300 Query: 301 SDWPEVHWVADTEKSKRVNLDTLTKEEVASWKPGQTLLLNGKMLTGRDAAHKRIQDMLAK 360 WP+V W D KSK VNLDTLT+EEVASWKPG TLLLNGKMLTGRDAAHKRIQDMLAK Sbjct: 301 DLWPDVKWAPDYNKSKSVNLDTLTREEVASWKPGDTLLLNGKMLTGRDAAHKRIQDMLAK 360 Query: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTDMMLEQTGLISMIGKSER 420 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFT+MML QTGLI MIGK+ER Sbjct: 361 GEKLPVDFTNRVIYYVGPVDPVRDEVVGPAGPTTATRMDKFTEMMLAQTGLIGMIGKAER 420 Query: 421 GPAAIEAIKKHKSAYLMAVGGSAYLVSKAIKSAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 GPA IEAI+KHKSAYLMAVGG+AYLV+KAIK AKVLGFADLGMEAIYEFDVKDMPVTVAV Sbjct: 421 GPAGIEAIRKHKSAYLMAVGGAAYLVAKAIKQAKVLGFADLGMEAIYEFDVKDMPVTVAV 480 Query: 481 DANGISVHNTGPAEWKEKIAQSVSLSKIPVTTA 513 D+ G SVH TGPAEW+ KI KIPV A Sbjct: 481 DSTGSSVHQTGPAEWQAKIG------KIPVAIA 507