BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2962.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774964.1| glutamate racemase [Herbaspirillum seropedic... 445 e-123 ref|YP_001099229.1| glutamate racemase [Herminiimonas arsenicoxy... 296 3e-78 ref|YP_001352569.1| glutamate racemase [Janthinobacterium sp. Ma... 290 1e-76 ref|YP_004754001.1| glutamate racemase [Collimonas fungivorans T... 290 3e-76 ref|ZP_04578288.1| glutamate racemase [Oxalobacter formigenes OX... 278 9e-73 >ref|YP_003774964.1| glutamate racemase [Herbaspirillum seropedicae SmR1] gb|ADJ63056.1| glutamate racemase protein [Herbaspirillum seropedicae SmR1] Length = 297 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 259/297 (87%), Positives = 272/297 (91%) Query: 1 MNEAVKQVSAPSAAGSDSSSPMPAAANAAVGIFDSGIGGLSVLRHIHSALPREQLIYFAD 60 M+EAVKQ+ PSA SDSSSPMP AA+AA+GIFDSGIGGLSVLRHIH+ALPREQL+YFAD Sbjct: 1 MDEAVKQLRTPSAVRSDSSSPMPTAADAAIGIFDSGIGGLSVLRHIHAALPREQLLYFAD 60 Query: 61 SGYAPYGDKTEAQIVERSLTIASFLLEQGIKALVVACNTATAAAIQAIRARWPQLVVVGI 120 SGYAPYGDKTEAQIVERSL IASFLLEQ +KALVVACNTATAAAIQAIR RWPQL+VVGI Sbjct: 61 SGYAPYGDKTEAQIVERSLAIASFLLEQRVKALVVACNTATAAAIQAIRTRWPQLLVVGI 120 Query: 121 EPGLKPAAQQTRSGTVGVLATRSTLASQRFALLQQQMEARYQVRYLPQACVGLVDLIEKG 180 EPGLKPAAQ TRS TVGVLATRSTLASQRFALLQ QM+A+YQVRYLPQACVGLVDLIEKG Sbjct: 121 EPGLKPAAQLTRSRTVGVLATRSTLASQRFALLQAQMQAQYQVRYLPQACVGLVDLIEKG 180 Query: 181 ELYSPATVQLLERYLGPLLEQGADTLVLGCTHYPFVRPAIESVCQRLARGIPDIIDTGQA 240 EL+SPATVQLLERYL PLLEQGADTLVLGCTHYPFVRPAIESVC+ L PDIIDTGQA Sbjct: 181 ELHSPATVQLLERYLAPLLEQGADTLVLGCTHYPFVRPAIESVCKSLVGETPDIIDTGQA 240 Query: 241 VTRQLQRLLATEGLQAQAATGSLAGFTTASRSTLEQAFRGLLKLDPPVQALQPQTGG 297 VTRQLQRLL LQ AA+GSLAGFTTASRSTLE AFRGLLKLDPPVQALQPQ GG Sbjct: 241 VTRQLQRLLEAGQLQTGAASGSLAGFTTASRSTLENAFRGLLKLDPPVQALQPQGGG 297 >ref|YP_001099229.1| glutamate racemase [Herminiimonas arsenicoxydans] emb|CAL61102.1| Glutamate racemase [Herminiimonas arsenicoxydans] Length = 284 Score = 296 bits (757), Expect = 3e-78, Method: Composition-based stats. Identities = 170/283 (60%), Positives = 208/283 (73%), Gaps = 1/283 (0%) Query: 16 SDSSSPMPAAANAAVGIFDSGIGGLSVLRHIHSALPREQLIYFADSGYAPYGDKTEAQIV 75 S S++P P AA A +GIFDSG+G LSVLRHI + LP E L+ FADSGYAPYG K +A+IV Sbjct: 2 SFSATPDPVAAEAPIGIFDSGVGALSVLRHIQARLPSEHLLCFADSGYAPYGGKPDAEIV 61 Query: 76 ERSLTIASFLLEQGIKALVVACNTATAAAIQAIRARWPQLVVVGIEPGLKPAAQQTRSGT 135 ER+L IA+FLL + +KA+VVACNTATAAAI A+R ++P L+VVG+EPGLKPAA ++SG Sbjct: 62 ERTLAIAAFLLTKKVKAIVVACNTATAAAIDALRQQYPDLIVVGVEPGLKPAAVFSKSGK 121 Query: 136 VGVLATRSTLASQRFALLQQQMEARYQVRYLPQACVGLVDLIEKGELYSPATVQLLERYL 195 GVLAT STLAS RF L+ Q+ V +L QACVGLV+ IEKGEL SP T +LERY+ Sbjct: 122 AGVLATASTLASHRFIALRDQIAETTGVTFLTQACVGLVEQIEKGELSSPETAAMLERYV 181 Query: 196 GPLLEQGADTLVLGCTHYPFVRPAIESVCQRLARGIPDIIDTGQAVTRQLQRLLATEGLQ 255 PLL GADTL LGCTHYPFV+P IE++ +R + IIDTG+AV+RQL+RLL GLQ Sbjct: 182 TPLLRGGADTLALGCTHYPFVQPLIEAIAERESAVPVTIIDTGEAVSRQLERLLQQRGLQ 241 Query: 256 A-QAATGSLAGFTTASRSTLEQAFRGLLKLDPPVQALQPQTGG 297 + GSL FTT S+S LE AF LL L P V AL+ + Sbjct: 242 RFENMPGSLQAFTTGSQSALEHAFAKLLDLHPEVTALKAEAAA 284 >ref|YP_001352569.1| glutamate racemase [Janthinobacterium sp. Marseille] gb|ABR89235.1| glutamate racemase [Janthinobacterium sp. Marseille] Length = 284 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 165/283 (58%), Positives = 204/283 (72%), Gaps = 1/283 (0%) Query: 16 SDSSSPMPAAANAAVGIFDSGIGGLSVLRHIHSALPREQLIYFADSGYAPYGDKTEAQIV 75 S S+ P P AA+A +GIFDSG+G LSVLRHI + LP E L+ FADSGYAPYG K++A I+ Sbjct: 2 SFSAYPDPVAADAPIGIFDSGVGALSVLRHIQARLPSEHLLCFADSGYAPYGGKSDAAII 61 Query: 76 ERSLTIASFLLEQGIKALVVACNTATAAAIQAIRARWPQLVVVGIEPGLKPAAQQTRSGT 135 ER+L IA+FL + IKA+VVACNTATAAAI+A+R +PQL++VG+EPGLKPAA ++SG Sbjct: 62 ERTLDIAAFLTTKNIKAIVVACNTATAAAIEALRQHYPQLIIVGVEPGLKPAAVFSKSGK 121 Query: 136 VGVLATRSTLASQRFALLQQQMEARYQVRYLPQACVGLVDLIEKGELYSPATVQLLERYL 195 GVLAT STLAS RF L+ Q+ + +L QACVGLV+ IEKGEL S T+ +LERY+ Sbjct: 122 AGVLATASTLASSRFIALRDQISTSTGITFLTQACVGLVEQIEKGELDSTETIAMLERYV 181 Query: 196 GPLLEQGADTLVLGCTHYPFVRPAIESVCQRLARGIPDIIDTGQAVTRQLQRLLATEGLQ 255 PLL GADTL LGCTHYPFV+PAIE + QR + IIDTG+AV+RQL+RLL GLQ Sbjct: 182 TPLLRGGADTLALGCTHYPFVQPAIEVIAQRESAVPVTIIDTGEAVSRQLERLLQQRGLQ 241 Query: 256 A-QAATGSLAGFTTASRSTLEQAFRGLLKLDPPVQALQPQTGG 297 + GSL FTT +R L AF LL P V + +T Sbjct: 242 RFETTAGSLQAFTTGNRDALVAAFAKLLNQHPSVTEMPAKTAA 284 >ref|YP_004754001.1| glutamate racemase [Collimonas fungivorans Ter331] gb|AEK63178.1| Glutamate racemase [Collimonas fungivorans Ter331] Length = 290 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 169/277 (61%), Positives = 199/277 (71%), Gaps = 1/277 (0%) Query: 16 SDSSSPMPAAANAAVGIFDSGIGGLSVLRHIHSALPREQLIYFADSGYAPYGDKTEAQIV 75 + ++ MP A +A +GIFDSGIGGLSVLRHIH LP E L+YFADS YAPYGD++EA+I Sbjct: 4 TGNTQEMPMAQSAPIGIFDSGIGGLSVLRHIHQDLPLEDLLYFADSAYAPYGDRSEAEIS 63 Query: 76 ERSLTIASFLLEQGIKALVVACNTATAAAIQAIRARWPQLVVVGIEPGLKPAAQQTRSGT 135 RSL + FLL+QG KALVVACNTAT AAI+AIR +P L V+GIEPGLKPAA Q+RS Sbjct: 64 ARSLAVTGFLLQQGAKALVVACNTATTAAIKAIRNAYPALQVIGIEPGLKPAAAQSRSKI 123 Query: 136 VGVLATRSTLASQRFALLQQQMEARYQVRYLPQACVGLVDLIEKGELYSPATVQLLERYL 195 VGVLAT++TL S R LQQQ+ V + Q CVGLVD IEKGEL SP T LL RY+ Sbjct: 124 VGVLATKATLQSARLLALQQQIGEASGVHFELQPCVGLVDQIEKGELRSPQTALLLRRYI 183 Query: 196 GPLLEQGADTLVLGCTHYPFVRPAIESVCQRLARGIPDIIDTGQAVTRQLQRLLATEGLQ 255 PL+ QGADTLVLGCTHYPFVRP IE + LA G IIDTG AV+RQL ++L L Sbjct: 184 APLIAQGADTLVLGCTHYPFVRPLIEEIVAELASGPVTIIDTGAAVSRQLTKVLGENNLL 243 Query: 256 AQAA-TGSLAGFTTASRSTLEQAFRGLLKLDPPVQAL 291 AA G ++ FTT S+S L F LL+L PPV A+ Sbjct: 244 HTAARAGKVSAFTTGSQSVLSTTFASLLQLHPPVSAV 280 >ref|ZP_04578288.1| glutamate racemase [Oxalobacter formigenes OXCC13] gb|EEO29261.1| glutamate racemase [Oxalobacter formigenes OXCC13] Length = 283 Score = 278 bits (710), Expect = 9e-73, Method: Composition-based stats. Identities = 148/279 (53%), Positives = 189/279 (67%), Gaps = 4/279 (1%) Query: 12 SAAGSDSSSPMPAAANAAVGIFDSGIGGLSVLRHIHSALPREQLIYFADSGYAPYGDKTE 71 +++ SD+S + A+ +GIFDSG+GGLSVLRHI + LP E+L+YFADSGYAPYGDK E Sbjct: 2 NSSASDNSGKLKASG--PIGIFDSGVGGLSVLRHIATQLPDEELVYFADSGYAPYGDKPE 59 Query: 72 AQIVERSLTIASFLLEQGIKALVVACNTATAAAIQAIRARWPQLVVVGIEPGLKPAAQQT 131 +VERS I FLL+Q IKALVVACNTATA AI +R ++P L +VG+EPGLKPAA +T Sbjct: 60 EFVVERSFLITDFLLKQDIKALVVACNTATAMAIHLLREKYPDLPIVGVEPGLKPAAAKT 119 Query: 132 RSGTVGVLATRSTLASQRFALLQQQMEARYQVRYLPQACVGLVDLIEKGELYSPATVQLL 191 +GTVGV+AT TLAS +F +L Q + + V ++ QAC G+ DLIE EL S +L+ Sbjct: 120 ITGTVGVMATERTLASNKFHVLHQLLNDQTGVHFIMQACNGMADLIEHAELDSEPIFELV 179 Query: 192 ERYLGPLLEQGADTLVLGCTHYPFVRPAIESVCQRLARGIPDIIDTGQAVTRQLQRLLAT 251 +RYL PLLEQ ADT+VLGCTHYPFVR IE V +IIDTG AV RQL+ LL Sbjct: 180 QRYLLPLLEQKADTIVLGCTHYPFVRHVIEKVAADYGSTQLNIIDTGYAVARQLKHLLDI 239 Query: 252 EGLQAQAATGS--LAGFTTASRSTLEQAFRGLLKLDPPV 288 GL + + +T+ +T+ LL+ D PV Sbjct: 240 YGLNKNGCSPDSLVRAYTSGDPATISHLISRLLQTDMPV 278