BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2959.p         (241 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA82233.1| conserved hypothetical protein [blood disease ba...    57   2e-06

>emb|CCA82233.1| conserved hypothetical protein [blood disease bacterium R229]
          Length = 184

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 12/151 (7%)

Query: 65  VLDADIKIEGGQSNDWVATGIAVAKELGKLGISTDVKLTIYRSDLGELDNKRTPNGYKWL 124
           V   ++ + GG  ++W AT  A+A++    G  + +++T+ R+++ +       +G  + 
Sbjct: 3   VARVNVGVTGGTPSEWAATSAAIAEKTATFGADS-IEVTVRRNEITQ------AHGVMFR 55

Query: 125 TRIDYGVDPNRSMNTSNGDKQWLISYATNKSVATPEKIRIDQDFHALDDKY-----GNPA 179
             +     PN S    +G K W +  A    +AT + + I ++F AL++K         A
Sbjct: 56  EVVHAYYSPNPSHTVWDGGKVWEMYVANPNHLATQQDVAIFEEFQALNEKLIEKGVDGEA 115

Query: 180 NDEKIVAAIKKKYHLIGEFNLHRGNLSGNTN 210
            D+K  A I KKY+L  ++ L  GN+  N +
Sbjct: 116 ADKKAGAVIAKKYNLPKDWRLPNGNIDTNVD 146