BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2958.p         (93 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002890825.1| XRE family transcriptional regulator [Thauer...    84   6e-15
ref|ZP_02380058.1| transcriptional regulator, XRE family protein...    83   1e-14
ref|YP_421427.1| transcriptional regulator [Magnetospirillum mag...    78   3e-13
ref|ZP_07017805.1| transcriptional regulator, XRE family [Desulf...    77   9e-13
ref|ZP_06890649.1| transcriptional regulator, XRE family [Methyl...    77   9e-13

>ref|YP_002890825.1| XRE family transcriptional regulator [Thauera sp. MZ1T]
 gb|ACR02448.1| transcriptional regulator, XRE family [Thauera sp. MZ1T]
          Length = 93

 Score = 84.3 bits (207), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 65/90 (72%), Positives = 73/90 (81%)

Query: 1  MTDLATLKKHLLSNAAVREEYDLLAGEFALAQELIAARVRAGLSQQELAEKMQTSQSAIA 60
          MT+LA LK  +L+N   R EYD  A EF LA+ELI AR RAGL+Q ELAE+M T+QS IA
Sbjct: 1  MTELAALKARILANPEARAEYDAQAPEFELARELITARTRAGLTQSELAERMHTTQSTIA 60

Query: 61 RLESGRSMPSMRTLARYAAATGSRAVVRLE 90
          RLESGR+MPSMRTLARYA ATGSRAVVRLE
Sbjct: 61 RLESGRTMPSMRTLARYAEATGSRAVVRLE 90


>ref|ZP_02380058.1| transcriptional regulator, XRE family protein [Burkholderia
          ubonensis Bu]
          Length = 93

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/92 (58%), Positives = 74/92 (80%)

Query: 1  MTDLATLKKHLLSNAAVREEYDLLAGEFALAQELIAARVRAGLSQQELAEKMQTSQSAIA 60
          M +LAT++K +L++ A R  YD  A  FA+A+EL+AAR RAGL+Q+++AE+M+T  S IA
Sbjct: 1  MIELATVEKRVLADPAARAGYDAQAFGFAVARELVAARARAGLTQEQVAERMRTPHSTIA 60

Query: 61 RLESGRSMPSMRTLARYAAATGSRAVVRLEVP 92
           +ESGR+MPS+RTL RYA ATGSRAV+RL+ P
Sbjct: 61 YMESGRTMPSLRTLFRYAKATGSRAVLRLDAP 92


>ref|YP_421427.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
 dbj|BAE50868.1| Predicted transcriptional regulator [Magnetospirillum magneticum
          AMB-1]
          Length = 93

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 55/89 (61%), Positives = 67/89 (75%)

Query: 1  MTDLATLKKHLLSNAAVREEYDLLAGEFALAQELIAARVRAGLSQQELAEKMQTSQSAIA 60
          MT L  LK  +L++  V+ EYD LA EF +A+ LI AR RAGLSQ ELA+KM T+QS +A
Sbjct: 1  MTSLNDLKAKMLADPEVKAEYDRLAPEFEIAETLIRARQRAGLSQAELAKKMGTTQSVVA 60

Query: 61 RLESGRSMPSMRTLARYAAATGSRAVVRL 89
          RLESGRS+PS  +LAR+AAATGSR  V L
Sbjct: 61 RLESGRSLPSSTSLARFAAATGSRLHVEL 89


>ref|ZP_07017805.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
 gb|EFI33681.1| transcriptional regulator, XRE family [Desulfonatronospira
          thiodismutans ASO3-1]
          Length = 93

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 47/89 (52%), Positives = 58/89 (65%)

Query: 1  MTDLATLKKHLLSNAAVREEYDLLAGEFALAQELIAARVRAGLSQQELAEKMQTSQSAIA 60
          M  L  LK+ +L +  V+ EYD L  EF  A  LI AR +AGL+Q ELA +M   Q+ IA
Sbjct: 1  MKPLGELKEEILKDPDVKREYDRLQDEFGFASMLIEARTKAGLTQTELARRMGMKQAGIA 60

Query: 61 RLESGRSMPSMRTLARYAAATGSRAVVRL 89
          RLESGR  PSM+TL +YAAATG    VR+
Sbjct: 61 RLESGRHNPSMKTLQKYAAATGHELSVRM 89


>ref|ZP_06890649.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
 gb|EFH00868.1| transcriptional regulator, XRE family [Methylosinus trichosporium
          OB3b]
          Length = 93

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 51/83 (61%), Positives = 66/83 (79%)

Query: 7  LKKHLLSNAAVREEYDLLAGEFALAQELIAARVRAGLSQQELAEKMQTSQSAIARLESGR 66
          +K  L++N AV+ EYD LA EF ++ EL+ AR+RAGLSQ ELA +M TSQSAIARLESG+
Sbjct: 8  IKARLMTNPAVKAEYDALAPEFEISAELVKARLRAGLSQAELATRMGTSQSAIARLESGQ 67

Query: 67 SMPSMRTLARYAAATGSRAVVRL 89
          ++PS +TL R+A ATGS+  VRL
Sbjct: 68 TLPSTKTLLRFAEATGSKFHVRL 90