BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2957.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002890826.1| hypothetical protein Tmz1t_3860 [Thauera sp....   105   2e-21
ref|YP_003642864.1| protein of unknown function DUF891 [Thiomona...    96   1e-18
ref|YP_428491.1| hypothetical protein Rru_A3410 [Rhodospirillum ...    85   3e-15
ref|ZP_06890650.1| protein of unknown function DUF891 [Methylosi...    78   3e-13
ref|YP_420279.1| hypothetical protein amb0916 [Magnetospirillum ...    78   5e-13

>ref|YP_002890826.1| hypothetical protein Tmz1t_3860 [Thauera sp. MZ1T]
 gb|ACR02449.1| protein of unknown function DUF891 [Thauera sp. MZ1T]
          Length = 112

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 1   MLERFGPHAVGMPHVRPIEGKLWEMRLTGRDGIARALYVSVSQRRLVVLHVFVKKTQQTD 60
           +LE FGP  VGMPH+RP+EGKLWEMR+TGRDGIARA+YV+ + +RL VLHVF KKTQ+T 
Sbjct: 36  LLESFGPQKVGMPHIRPLEGKLWEMRMTGRDGIARAVYVARTGQRLTVLHVFTKKTQKTP 95

Query: 61  RHAIETALTRMKRMEND 77
           R AIETA  R++ + ND
Sbjct: 96  RKAIETAQARLRSLTND 112


>ref|YP_003642864.1| protein of unknown function DUF891 [Thiomonas intermedia K12]
 gb|ADG30534.1| protein of unknown function DUF891 [Thiomonas intermedia K12]
          Length = 107

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 58/74 (78%)

Query: 1   MLERFGPHAVGMPHVRPIEGKLWEMRLTGRDGIARALYVSVSQRRLVVLHVFVKKTQQTD 60
           +LE FGP  VGMPHVRPIEG+LWEMR+ G+DGIARA+Y +   R L+VLHVFVKKTQ T 
Sbjct: 33  LLESFGPQHVGMPHVRPIEGRLWEMRMQGKDGIARAVYAATQGRTLLVLHVFVKKTQTTP 92

Query: 61  RHAIETALTRMKRM 74
           R AIE A  R++ M
Sbjct: 93  RAAIEAARKRLEAM 106


>ref|YP_428491.1| hypothetical protein Rru_A3410 [Rhodospirillum rubrum ATCC 11170]
 gb|ABC24204.1| Protein of unknown function DUF891 [Rhodospirillum rubrum ATCC
           11170]
          Length = 128

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 55/70 (78%)

Query: 1   MLERFGPHAVGMPHVRPIEGKLWEMRLTGRDGIARALYVSVSQRRLVVLHVFVKKTQQTD 60
           +L   GP  V  P+V+P+ GKLWEMR+ G+DGIARA+Y++   +RLVV+HVFVKKTQ+T 
Sbjct: 52  LLREAGPQKVREPYVKPLGGKLWEMRMKGKDGIARAIYLAAIGKRLVVVHVFVKKTQKTP 111

Query: 61  RHAIETALTR 70
           R A+ETA+ R
Sbjct: 112 RAALETAMRR 121


>ref|ZP_06890650.1| protein of unknown function DUF891 [Methylosinus trichosporium
           OB3b]
 gb|EFH00869.1| protein of unknown function DUF891 [Methylosinus trichosporium
           OB3b]
          Length = 107

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/69 (60%), Positives = 52/69 (75%)

Query: 6   GPHAVGMPHVRPIEGKLWEMRLTGRDGIARALYVSVSQRRLVVLHVFVKKTQQTDRHAIE 65
           G  ++  PHV+ +EGKLWE+RLTGRDGIARALYV+   R++VVL  FVKKTQ+T R  IE
Sbjct: 38  GLESLSEPHVKHLEGKLWELRLTGRDGIARALYVTTVGRKVVVLRAFVKKTQKTPRAEIE 97

Query: 66  TALTRMKRM 74
            AL R K +
Sbjct: 98  LALRRAKEV 106


>ref|YP_420279.1| hypothetical protein amb0916 [Magnetospirillum magneticum AMB-1]
 dbj|BAE49720.1| Phage-related protein [Magnetospirillum magneticum AMB-1]
          Length = 108

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 57/74 (77%)

Query: 1   MLERFGPHAVGMPHVRPIEGKLWEMRLTGRDGIARALYVSVSQRRLVVLHVFVKKTQQTD 60
           M+E  G   +G PHV+P+EGKLWEMRL GRDGIARALYV+V+ RR+VV+  FVKKTQ+T 
Sbjct: 33  MIETAGLEGMGHPHVKPLEGKLWEMRLMGRDGIARALYVTVTGRRVVVVRAFVKKTQKTP 92

Query: 61  RHAIETALTRMKRM 74
           R  IE AL R K +
Sbjct: 93  RQEIELALARAKEI 106