BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2956.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774961.1| response regulator for colanic capsule biosy... 403 e-111 ref|YP_002008320.1| transcriptional regulator signal receiver n-... 162 2e-38 ref|YP_004682125.1| hypothetical protein CNE_2c19370 [Cupriavidu... 162 4e-38 ref|YP_297869.1| two component LuxR family transcriptional regul... 160 2e-37 ref|YP_841482.1| response regulator [Ralstonia eutropha H16] >gi... 159 3e-37 >ref|YP_003774961.1| response regulator for colanic capsule biosynthesis protein [Herbaspirillum seropedicae SmR1] gb|ADJ63053.1| response regulator for colanic capsule biosynthesis protein [Herbaspirillum seropedicae SmR1] Length = 221 Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats. Identities = 202/221 (91%), Positives = 212/221 (95%) Query: 1 MNLKKVLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDF 60 MNLKKVLHVAIADDHPIVLGALR ELARLPEIRIDLEV+ GE LI+ALKR+PCEIVITDF Sbjct: 1 MNLKKVLHVAIADDHPIVLGALRNELARLPEIRIDLEVDTGEDLINALKRTPCEIVITDF 60 Query: 61 AMPADDSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDE 120 AMP ++SDESDGFALVKR+K EHPSTK+IVYTAMNNGAVIRRLYRMGVFAVINKREK DE Sbjct: 61 AMPNEESDESDGFALVKRIKAEHPSTKLIVYTAMNNGAVIRRLYRMGVFAVINKREKPDE 120 Query: 121 LINACLATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEI 180 LINACLATQSSKQLYFPVSLRGELEMSWAQG+GF RELTQSELEVVRLFVEGQSLGEI Sbjct: 121 LINACLATQSSKQLYFPVSLRGELEMSWAQGDGFAATRELTQSELEVVRLFVEGQSLGEI 180 Query: 181 CVRLSRTPSTISTHKNNAMRKLGLSTDAELIKYAYSTGMIN 221 CVRLSRTPSTISTHKNNAMRKLGLS+DAELIKYA+STGMIN Sbjct: 181 CVRLSRTPSTISTHKNNAMRKLGLSSDAELIKYAFSTGMIN 221 >ref|YP_002008320.1| transcriptional regulator signal receiver n-trem domain,luxr c-term domain [Cupriavidus taiwanensis LMG 19424] emb|CAQ72266.1| putative transcriptional regulator, signal receiver N-trem domain,LuxR C-term domain [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 89/216 (41%), Positives = 131/216 (60%), Gaps = 4/216 (1%) Query: 5 KVLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPA 64 +VL VA+ADDHP+V+ ALR L R ++I E NG L+ L R P +I ITDF M Sbjct: 12 RVLRVALADDHPLVMAALRDCLQRSARVQISAECRNGTELLGTLARHPADIAITDFCMGH 71 Query: 65 DDSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINA 124 D+ DGF L+ RL HP+T+V+V +A N A++RR ++GV ++K + +E++ A Sbjct: 72 GDA-SLDGFNLLSRLARHHPATRVVVISARANAAIVRRAMKLGVRGYVSKEDPLEEVVRA 130 Query: 125 CLATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICVRL 184 C + + +++ L+ + G RE TQ ELEV+RLF +G L EI +L Sbjct: 131 CAHAAFGRGCFCSPAVQAALQRAALAGTP---AREPTQRELEVIRLFAQGAQLTEIAAKL 187 Query: 185 SRTPSTISTHKNNAMRKLGLSTDAELIKYAYSTGMI 220 R+ ST+S+ K AMRKLG+ T+ LI+YAY +G+I Sbjct: 188 GRSVSTVSSQKTVAMRKLGVQTNTALIRYAYESGLI 223 >ref|YP_004682125.1| hypothetical protein CNE_2c19370 [Cupriavidus necator N-1] gb|AEI80893.1| capsular synthesis regulator component B [Cupriavidus necator N-1] Length = 215 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 130/215 (60%), Gaps = 4/215 (1%) Query: 6 VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65 VL VA+ADDHP+V+ ALR L R ++I E NG L+ AL + P +I ITDF M Sbjct: 5 VLRVALADDHPLVVAALRDCLQRSGSVQISCECRNGTELLGALDKHPADIAITDFCMGHG 64 Query: 66 DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125 D+ DGF L+ RL HP T+V+V +A +N A+IRR ++GV A ++K + +E++ AC Sbjct: 65 DT-SLDGFNLLGRLARRHPLTRVVVISAQSNPAIIRRAMKLGVRAFVSKEDHLEEVVRAC 123 Query: 126 LATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICVRLS 185 + S ++ ++ L+ + G ELTQ ELEV+RL+ +G L +I +L Sbjct: 124 IHIASGGSCFYSPAVHAILQHATLAG---APATELTQRELEVIRLYAQGLQLTDIAGKLG 180 Query: 186 RTPSTISTHKNNAMRKLGLSTDAELIKYAYSTGMI 220 R+ STIS+ K AMRKLG+ T+ LI YAY +I Sbjct: 181 RSVSTISSQKTVAMRKLGVQTNTGLIGYAYENRLI 215 >ref|YP_297869.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ63025.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 215 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 88/215 (40%), Positives = 129/215 (60%), Gaps = 4/215 (1%) Query: 6 VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65 ++ VA+ADDHP+V+ ALR L R I E G L+ AL R P +I ITDF M Sbjct: 5 LIRVAVADDHPLVVTALRDCLHRSARFHIACECTGGSELVQALDRQPADIAITDFCMGHG 64 Query: 66 DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125 D+ DGF L+ RL H T+++V +A +N A+IRR ++G A ++K ++ +E + AC Sbjct: 65 DA-TLDGFNLLNRLARRHRGTRIVVVSAQSNAAIIRRAVKLGARAFVSKEDELEETLRAC 123 Query: 126 LATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICVRLS 185 +S+ Y+ S+R L+ + +LT ELEVVRL+ +G L EI +L Sbjct: 124 FHVMTSESCYYSPSIRAILDDAAMVD---APATDLTLRELEVVRLYAQGMQLNEIAAKLG 180 Query: 186 RTPSTISTHKNNAMRKLGLSTDAELIKYAYSTGMI 220 R+ STIS+ K AMRKLG++T+ +LI+YAY G+I Sbjct: 181 RSVSTISSQKTVAMRKLGVNTNTDLIRYAYENGLI 215 >ref|YP_841482.1| response regulator [Ralstonia eutropha H16] emb|CAJ96752.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 215 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 90/215 (41%), Positives = 129/215 (60%), Gaps = 4/215 (1%) Query: 6 VLHVAIADDHPIVLGALRGELARLPEIRIDLEVENGEALISALKRSPCEIVITDFAMPAD 65 VL VA+ADDHP+V+ ALR L R +I E NG L+ AL + +I ITDF M Sbjct: 5 VLRVALADDHPLVVAALRDCLQRSGSAQISCECRNGTELLGALDQHHADIAITDFCMGHG 64 Query: 66 DSDESDGFALVKRLKTEHPSTKVIVYTAMNNGAVIRRLYRMGVFAVINKREKTDELINAC 125 D+ DGF L+ RL HP T+V+V +A N A+IRR ++GV A ++K + +E++ AC Sbjct: 65 DT-SLDGFNLLGRLARRHPLTRVVVISAQTNPAIIRRAMKLGVRAFVSKEDHLEEVVRAC 123 Query: 126 LATQSSKQLYFPVSLRGELEMSWAQGEGFGLVRELTQSELEVVRLFVEGQSLGEICVRLS 185 + S ++ ++ L+ + G ELTQ ELEV+RL+V+G L +I +L Sbjct: 124 IHVASGGSCFYSPAVHAILQHATLAG---APATELTQRELEVIRLYVQGLQLTDIAGKLG 180 Query: 186 RTPSTISTHKNNAMRKLGLSTDAELIKYAYSTGMI 220 R+ STIS+ K AMRKLG+ T+ LI+YAY +I Sbjct: 181 RSVSTISSQKTVAMRKLGVQTNTGLIRYAYENRLI 215