BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2951.p (519 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774957.1| response regulator containing a CheY-like re... 575 e-161 ref|YP_004752514.1| putative GGDEF domain-containing protein [Co... 372 e-100 ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S1... 353 4e-95 ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimon... 346 7e-93 ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans... 345 1e-92 >ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63049.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 575 bits (1481), Expect = e-161, Method: Composition-based stats. Identities = 312/508 (61%), Positives = 393/508 (77%), Gaps = 2/508 (0%) Query: 1 MPEHQIQRASKTAKLFVVVVCLIIVVLEAWSAWRAYEVATDEAIRNASNMALALTQHADQ 60 M +H S+TA LFVVVVC++I++LEAW+AWRA EVA E+ +ASN+ALAL QHA+Q Sbjct: 14 MAQHGKTHTSRTALLFVVVVCVVILLLEAWTAWRAREVALSESTTDASNVALALIQHAEQ 73 Query: 61 SFKEIDVVLLGIQEHMEYDGPGVAGRRRTHEFMVASVAAVPQLAGLMVYDETGLAIGTSQ 120 S KE D+VL +QEH++++ + R RTH+FM+ SVA++PQLA L V DE G + +SQ Sbjct: 74 SIKEADIVLETVQEHLDHEDRSASARIRTHDFMIRSVASLPQLAQLTVVDEQGRTVASSQ 133 Query: 121 ATLEH--RYIQDDYFLHHQRLRTDQAYIGKPMRSRTNGQWIVTMSRRVNHADGSFAGVVV 178 + +QDDYF +HQ R+D+ +IG+PMRS GQ +T+SRR+NH DGSFAGV+V Sbjct: 134 QRMVQTGSPVQDDYFQYHQHRRSDRPFIGQPMRSHVTGQRTLTVSRRINHVDGSFAGVIV 193 Query: 179 ADVDLSHFQRYYEQFAIGRDGAILFGLNEGTVIYRQPLLSYSIGLDISKSALVTNYLSKA 238 A++DL++FQRYYEQF IG G ILFGL G++I R+PLL+ + S + ++ +A Sbjct: 194 AEIDLAYFQRYYEQFNIGPHGVILFGLTGGSLILRRPLLADMTDRSPAMSEALRKHMEQA 253 Query: 239 EQGSFELRSPRDDIVRLTSFQHCSLYPLFVAVALAKDDVLEDWTRRVWIRGIAVTLLLII 298 +GSF +RS RD + R++ FQ YP+F VALAKDD+LEDW+R VW+RGI V LLL + Sbjct: 254 RRGSFAMRSERDGVERISCFQQGEAYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAV 313 Query: 299 IAYGGNRLVAQVAGRENAELEAITARTELERLYRTLEAQSQKDGLTDVFNRRYFDAALTA 358 I +GG RLV VAGRE AE +AI AR ELE LYRTLEAQSQKDGLTDVFNRRYFDAAL A Sbjct: 314 ICFGGKRLVVLVAGRERAEAQAIAARQELESLYRTLEAQSQKDGLTDVFNRRYFDAALAA 373 Query: 359 ELARLNRSGESLSLIMVDVDHFKRYNDTYGHAAGDICLKQVAAALNGVARRQGDIVARYG 418 ELARLNR+GESLSL+M+DVDHFK++NDTYGHAAGD+CL+QVAAA++ VARRQGDIVARYG Sbjct: 374 ELARLNRTGESLSLMMIDVDHFKQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYG 433 Query: 419 GEEFALILPNCNAASASAISSRLVQAVRALNIPHEGSSVGHVTISVGAASLASGKGAQVD 478 GEEFA+ILPNC+ SA ++ R+VQAVR L I HE S +G VTISVG ASLASGK ++ Sbjct: 434 GEEFAVILPNCHPGSAQGLAHRVVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIE 493 Query: 479 ARELIDTADAALYRAKEQGRDRAIQHDY 506 RELID+AD ALYRAKE+GRDRA+Q + Sbjct: 494 PRELIDSADGALYRAKEEGRDRAVQRPF 521 >ref|YP_004752514.1| putative GGDEF domain-containing protein [Collimonas fungivorans Ter331] gb|AEK61691.1| putative GGDEF domain protein [Collimonas fungivorans Ter331] Length = 521 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 201/498 (40%), Positives = 301/498 (60%), Gaps = 3/498 (0%) Query: 13 AKLFVVVVCLIIVVLEAWSAWRAYEVATDEAIRNASNMALALTQHADQSFKEIDVVLLGI 72 A +FVV+VC+ ++ +E W +W A + E SN+A AL+QHAD + KE D VL+G+ Sbjct: 25 ATVFVVLVCVSLMSVEVWRSWNARNIELHETEIATSNLARALSQHADDTIKEADTVLVGL 84 Query: 73 QEHMEYDGPGVAGRRRTHEFMVASVAAVPQLAGLMVYDETGLAIGTSQATLEHRYIQDD- 131 E +E DG G A R H ++ +A +PQL L +YDETGL + ++ D Sbjct: 85 VERLEVDGTGSASLERLHALLIHHIAELPQLNDLSIYDETGLWLANARTGPVPLVNNSDR 144 Query: 132 -YFLHHQRLRTDQAYIGKPMRSRTNGQWIVTMSRRVNHADGSFAGVVVADVDLSHFQRYY 190 YF +H+ YIG P+RSR+ G WIVT+SRR NHADGSFAG+V+ +++ +F++YY Sbjct: 145 QYFRYHRSHPGRGPYIGPPVRSRSTGAWIVTVSRRYNHADGSFAGLVLGTINIDYFKKYY 204 Query: 191 EQFAIGRDGAILFGLNEGTVIYRQPLLSYSIGLDISKSALVTNYLSKAEQGSFELRSPRD 250 + F IGR G+I LN+GT++ R+P++ +IG ++S + +Y S++ G+ ++S +D Sbjct: 205 DSFDIGRAGSIFLSLNDGTMLVRRPMMDDTIGKNLSNYPIYRDYASRSAVGTAIMKSDQD 264 Query: 251 DIVRLTSFQHCSLYPLFVAVALAKDDVLEDWTRRVWIRGIAVTLLLIIIAYGGNRLVAQV 310 I RL +++H YPLFV VA +K++VL +W ++ LL + + G RL+ Q+ Sbjct: 265 GIERLIAYRHLQQYPLFVTVARSKNEVLAEWRADTYLHLFGAMLLTLALGLLGWRLIHQI 324 Query: 311 AGRENAELEAITARTELERLYRTLEAQSQKDGLTDVFNRRYFDAALTAELARLNRSGESL 370 R AE + + + L L R LE + +D LT + NRR FD AL E +R R+ SL Sbjct: 325 RLRLLAENDLLCVQESLRMLNRHLEQLALQDSLTGLANRRQFDNALRDEFSRAMRTENSL 384 Query: 371 SLIMVDVDHFKRYNDTYGHAAGDICLKQVAAALNGVARRQGDIVARYGGEEFALILPNCN 430 +L+M+DVD+FK+YND YGH AGD CL+Q++ + R GD+ ARYGGEE ++LP+ N Sbjct: 385 ALVMIDVDYFKQYNDIYGHLAGDECLRQISEIVKASKNRPGDLAARYGGEELVVLLPDTN 444 Query: 431 AASASAISSRLVQAVRALNIPHEGSSVGHVTISVGAASLASGKGAQVDARELIDTADAAL 490 A A A++ ++ A+ L+I H S+ G VT+S G + + + ELI AD AL Sbjct: 445 LAGAVAVAEKIRVAICNLHIEHPSSTFGLVTVSAGVDAFVPVRDDNI-PFELIQAADRAL 503 Query: 491 YRAKEQGRDRAIQHDYPR 508 Y AK GR+R PR Sbjct: 504 YAAKSAGRNRVCSSADPR 521 >ref|YP_002947547.1| diguanylate cyclase [Variovorax paradoxus S110] gb|ACS22281.1| diguanylate cyclase [Variovorax paradoxus S110] Length = 512 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 198/488 (40%), Positives = 291/488 (59%), Gaps = 3/488 (0%) Query: 16 FVVVVCLIIVVLEAWSAWRAYEVATDEAIRNASNMALALTQHADQSFKEIDVVLLGIQEH 75 FV VVCL ++ ++ W++W A + SN++ A+ Q AD + K+ D VL+G+ E Sbjct: 14 FVAVVCLSLLAIDFWNSWEARTDQLQQMNVATSNLSRAMAQQADDTIKKADTVLVGMVER 73 Query: 76 MEYDGPGVAGRRRTHEFMVASVAAVPQLAGLMVYDETGLAIGTSQATLEHRYIQDD--YF 133 +E+DG + R + + VA +PQL GL +YD+ G I S+ T D YF Sbjct: 74 VEHDGTDPSDVARLRQLLALRVAELPQLDGLHIYDQDGNWIANSRPTRPENLNNADREYF 133 Query: 134 LHHQRLRTDQAYIGKPMRSRTNGQWIVTMSRRVNHADGSFAGVVVADVDLSHFQRYYEQF 193 H+ +IG P++SRT+G+ +V +SRR+NHADGSFAGV +A + + F R+Y+ Sbjct: 134 AFHRTHAERGPHIGIPVQSRTSGRLLVPVSRRINHADGSFAGVALATIHVDFFSRFYDSL 193 Query: 194 AIGRDGAILFGLNEGTVIYRQPLLSYSIGLDISKSALVTNYLSKAEQGSFELRSPRDDIV 253 IG+ GA+ L GT++ R+P +G ++ ++ L +Y + G+ ++S +D + Sbjct: 194 DIGQAGAVALVLENGTMMTRRPYSPDMVGRNMLETQLFRSYAAHGPVGTAYIKSAQDGVT 253 Query: 254 RLTSFQHCSLYPLFVAVALAKDDVLEDWTRRVWIRGIAVTLLLIIIAYGGNRLVAQVAGR 313 RL SF+ YPLFV+ AL+KD++L +W R V LL +I+ + G RLV Q + Sbjct: 254 RLNSFRRLDNYPLFVSAALSKDEILANWWRDTLWHSGGVVLLSLIVGFIGWRLVRQFQLQ 313 Query: 314 ENAELEAITARTELERLYRTLEAQSQKDGLTDVFNRRYFDAALTAELARLNRSGESLSLI 373 E E AR LE L +TL + +DGLT + NRR FD AL +E +R R+ +L+LI Sbjct: 314 TRTEAELRQARDALETLNKTLNTLAMEDGLTGLANRRQFDVALDSEYSRAARNASTLALI 373 Query: 374 MVDVDHFKRYNDTYGHAAGDICLKQVAAALNGVA-RRQGDIVARYGGEEFALILPNCNAA 432 M+DVD FK+YND YGHAAGD CL+ + + VA RR GD+ ARYGGEE A++LPN + A Sbjct: 374 MMDVDCFKQYNDIYGHAAGDECLQTIGRTIARVASRRPGDLAARYGGEELAVLLPNTDVA 433 Query: 433 SASAISSRLVQAVRALNIPHEGSSVGHVTISVGAASLASGKGAQVDARELIDTADAALYR 492 A ++ R+ AVR L I H G++ G VT+S G +L+ G +ELI +AD ALY Sbjct: 434 GAVMLAERIRSAVRELKIEHAGTADGFVTLSAGVDALSPQAGIGGQPKELIRSADKALYA 493 Query: 493 AKEQGRDR 500 AK GR+R Sbjct: 494 AKSGGRNR 501 >ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] emb|CAL61890.1| conserved hypothetical protein, GGDEF domain [Herminiimonas arsenicoxydans] Length = 519 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 201/492 (40%), Positives = 291/492 (59%), Gaps = 3/492 (0%) Query: 12 TAKLFVVVVCLIIVVLEAWSAWRAYEVATDEAIRNASNMALALTQHADQSFKEIDVVLLG 71 T +F+V V +++V + A +AW A E SNMA AL QHA+ + ID +L+ Sbjct: 19 TLTVFIVFVTVLLVCILALNAWHARAEKIRETETATSNMAKALAQHAEDTVGGIDNLLVS 78 Query: 72 IQEHMEYDGPGVAGRRRTHEFMVASVAAVPQLAGLMVYDETGLAIGTSQATLEHRYIQDD 131 ++E +E D R ++F+ V +P L GL VYDE G + SQ TL D Sbjct: 79 MEEMLERDSWNPLQLERMNQFLRQRVTDLPLLHGLFVYDEHGQWVANSQETLRTDLNNAD 138 Query: 132 --YFLHHQRLRTDQAYIGKPMRSRTNGQWIVTMSRRVNHADGSFAGVVVADVDLSHFQRY 189 YF+ H+ ++G P+RSR+ G WI+T+SRR+ HADG+FAGVV+A +++ +F Y Sbjct: 139 REYFIFHRTHTDSGPHLGPPIRSRSTGDWIITVSRRLEHADGNFAGVVLATINMQYFSAY 198 Query: 190 YEQFAIGRDGAILFGLNEGTVIYRQPLLSYSIGLDISKSALVTNYLSKAEQGSFELRSPR 249 Y+ F IG+ GAI+ + GT++ R+P IG DIS + Y + G+ L + Sbjct: 199 YKDFDIGKAGAIVLTTDSGTLLVRRPFDEAVIGGDISNGPVYQFYKRQGSSGTAILTANI 258 Query: 250 DDIVRLTSFQHCSLYPLFVAVALAKDDVLEDWTRRVWIRGIAVTLLLIIIAYGGNRLVAQ 309 D R+ S++H YPL +AVA + D+VLE W ++L+++ G RLV Q Sbjct: 259 DRTERIYSYRHLDRYPLLIAVAQSTDEVLESWRNSTMRFAFFSAMVLLLLWLLGARLVHQ 318 Query: 310 VAGRENAELEAITARTELERLYRTLEAQSQKDGLTDVFNRRYFDAALTAELARLNRSGES 369 + RE A+ E TAR +LER L A + D LT + NRR FDAAL E AR R+ S Sbjct: 319 ITVRERAQSELRTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTS 378 Query: 370 LSLIMVDVDHFKRYNDTYGHAAGDICLKQVAAALNGVARRQGDIVARYGGEEFALILPNC 429 L+LIM+DVDHFK+YND YGH GD CLK+++ L R GD+VARYGGEEF ++LP Sbjct: 379 LALIMLDVDHFKKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGT 438 Query: 430 NAASASAISSRLVQAVRALNIPHEGSSVGHVTISVGAASLASGKGAQVDARELIDTADAA 489 + A A+A++ R+ A++ALN+ H + G VT S+G A+L + Q ++L+ AD A Sbjct: 439 DRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAALIPQR-QQNSPQQLVHAADQA 497 Query: 490 LYRAKEQGRDRA 501 LY+AKE GR+++ Sbjct: 498 LYKAKEDGRNQS 509 >ref|YP_001479297.1| diguanylate cyclase [Serratia proteamaculans 568] gb|ABV42169.1| diguanylate cyclase [Serratia proteamaculans 568] Length = 516 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 195/517 (37%), Positives = 296/517 (57%), Gaps = 22/517 (4%) Query: 1 MPEHQIQRASK-----------TAKLFVVVVCLIIVVLEAWSAWRAYEVATDEAIRNASN 49 M + Q+Q A + A +FVV+V + +++ AW W A++ A ++N Sbjct: 1 MTQQQLQDAERPRNGKNSPLLFQAGVFVVIVAVTLILFNAWQIWNAHQRDLQSAENESAN 60 Query: 50 MALALTQHADQSFKEIDVVLLGIQEHMEYDGPGVAGRRRTHEFMVASVAAVPQLAGLMVY 109 +A AL QHAD +F + D L + E ++ DG R + M V +PQL GL VY Sbjct: 61 LARALAQHADDTFMQTDSTLSDLSERIQVDGLARPQLLRLQKVMQTQVGNLPQLHGLFVY 120 Query: 110 DETGLAIGTSQATLEHRYIQD------DYFLHHQRLRTDQAYIGKPMRSRTNGQWIVTMS 163 D G + TS R++Q+ +YF +H ++ YIGK +RSR+ G I+ +S Sbjct: 121 DAQGNWVVTSSG----RFVQNANNADREYFKYHLEHNSNAVYIGKVVRSRSTGDLIIPVS 176 Query: 164 RRVNHADGSFAGVVVADVDLSHFQRYYEQFAIGRDGAILFGLNEGTVIYRQPLLSYSIGL 223 RR NH DGSFAGVV+A + +++F+++Y+ FA+ D ++ L +GT++YR+P +IG Sbjct: 177 RRFNHPDGSFAGVVLATLYINYFRQFYDTFALNSDASLNLLLADGTILYRRPYSLAAIGK 236 Query: 224 DISKSALVTNYLSKAEQGSFELRSPRDDIVRLTSFQHCSLYPLFVAVALAKDDVLEDWTR 283 +IS+ L L +E G+ + S D + R+ + + YPL +A L+K DVL DW Sbjct: 237 NISEGVLFREILPHSEFGNATITSRYDKVERIYGYSRVTRYPLVIAAGLSKKDVLADWRN 296 Query: 284 RVWIRGIAVTLLLIIIAYGGNRLVAQVAGRENAELEAITARTELERLYRTLEAQSQKDGL 343 + + LL I+ G L+ Q+ E E + R +L + RTLE + DGL Sbjct: 297 DSGLFALGGATLLAILLAMGMVLMRQINHSVRTEAELMRTRDQLTSINRTLEELALLDGL 356 Query: 344 TDVFNRRYFDAALTAELARLNRSGESLSLIMVDVDHFKRYNDTYGHAAGDICLKQVAAAL 403 T + NRR FD AL EL R +R+ S++L+M+D+D+FK+YND YGH AGD CL+Q+ L Sbjct: 357 TGLANRRQFDIALKNELMRASRNYRSVALLMLDIDYFKQYNDIYGHVAGDQCLQQIGQML 416 Query: 404 NGVARRQGDIVARYGGEEFALILPNCNAASASAISSRLVQAVRALNIPHEGSSVGHVTIS 463 G+A R DI+ARYGGEE A+ILP+ +A A + R+++AVR L IPH+G+ G +TIS Sbjct: 417 KGMASRSNDIMARYGGEEMAIILPDTDAQGALIFAERVIEAVRELKIPHDGNPHGVITIS 476 Query: 464 VGAASLASGKGAQVDARELIDTADAALYRAKEQGRDR 500 +G + I+ AD+ALY+AK QG++R Sbjct: 477 IGIYAKVPHMYNDT-PMSFINQADSALYQAKAQGKNR 512