BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.2950.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774956.1| hypothetical protein Hsero_1533 [Herbaspiril...   160   4e-38

>ref|YP_003774956.1| hypothetical protein Hsero_1533 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63048.1| hypothetical protein Hsero_1533 [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  160 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/112 (69%), Positives = 91/112 (81%)

Query: 1   MRCLIRYQLRDEASPAHHEFITEASDAEQVIRHLTEFLHPEVVFEFLPMQPGGKDSITQL 60
           MRCLIRYQLR+E  PAHHEF  +A D EQVI HLTEFLHPEVV+EFLP+QPGG D+ITQL
Sbjct: 1   MRCLIRYQLRNEDVPAHHEFTADAPDLEQVILHLTEFLHPEVVYEFLPVQPGGHDTITQL 60

Query: 61  RARMAHARDYLEQYCGLQSLSYMLLPEGATSAQGKWNSVLLSGQMASGSLHP 112
           R RM HAR YLEQYCGLQSLSYM+LP+G  S QG+W ++L+ G+ A  +  P
Sbjct: 61  RNRMNHARAYLEQYCGLQSLSYMILPDGLDSTQGRWATLLMQGEEAQDADLP 112