BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2949.p (490 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774955.1| ABC transporter containing duplicated ATPase... 637 e-180 ref|YP_004472881.1| ABC transporter [Pseudomonas fulva 12-X] >gi... 407 e-111 ref|YP_002648488.1| ABC transporter ATP-binding protein [Erwinia... 401 e-109 gb|ADP12911.1| ABC transporter, ATP-binding protein [Erwinia sp.... 401 e-109 ref|YP_001926479.1| ABC transporter [Methylobacterium populi BJ0... 398 e-108 >ref|YP_003774955.1| ABC transporter containing duplicated ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63047.1| ABC-type transport system containing duplicated ATPase protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 637 bits (1643), Expect = e-180, Method: Composition-based stats. Identities = 371/488 (76%), Positives = 420/488 (86%), Gaps = 2/488 (0%) Query: 1 MNILSPDAALRVQDLSVWHGQSALVQGIDFSIARGGVMTLLGESGSGKSLLAQAIMGNLP 60 MN P ALRV+DL+VWHGQ LV G+ F++ GGV++LLGESGSGKSLLAQAIMGNLP Sbjct: 1 MNASLPLDALRVEDLTVWHGQQPLVGGVSFAVPVGGVLSLLGESGSGKSLLAQAIMGNLP 60 Query: 61 GSLRCSGQIEIDGQRSDAADTAVRQRGWGRRIALLPQEPWLALDPTMTVARQVAETYELV 120 SLR +G I + GQ SDAAD RQ GWGRRIALLPQEPWLALDPTMTVARQVAETYELV Sbjct: 61 ASLRATGSISLAGQYSDAADGRSRQSGWGRRIALLPQEPWLALDPTMTVARQVAETYELV 120 Query: 121 SHPAADTQDDSLRAARKAARTLAGQALASLGLEDAADKYPFMISGGMAQRVAFLATHAAG 180 S A D Q++SLR AR A A +ALASLGLE AADKYPFMISGGMAQRVAFLATHAAG Sbjct: 121 SQSAPDQQNESLRRARSQAAASARRALASLGLEAAADKYPFMISGGMAQRVAFLATHAAG 180 Query: 181 APLLIIDEPTKGLDADRRGEVLALLQAAQQQDMSLLCITHDVWLARALGGELAVMLNGCL 240 APL+IIDEPTKGLD DRRGEVLALLQAAQ + +SLLCITHDVWLARALGG+LAV+ +G + Sbjct: 181 APLMIIDEPTKGLDVDRRGEVLALLQAAQAEGVSLLCITHDVWLARALGGQLAVLQDGAM 240 Query: 241 VERGPADALLARPQHAYTRRLLAADPACWTPPVAAGASAGPSSPVIVEVSKVAKTFGQQA 300 VE+G A+ALLA+P+HAYTRRLL ADPACW P A + VI E+ +++K+FG+QA Sbjct: 241 VEQGSAEALLAQPRHAYTRRLLGADPACWPLPEVRTPRA--DAAVIAELREISKSFGEQA 298 Query: 301 LFSDVSARIHAGEIVAISGPSGAGKTTFGNIVLGLLSPDAGQVTRAPGLARTAFQKIYQD 360 LF+ VSAR+HAGE+VA+SGPSG+GKT+ GNI+LGLL PD+GQV RAPGL RTAFQKIYQD Sbjct: 299 LFAGVSARLHAGEVVAVSGPSGSGKTSLGNILLGLLQPDSGQVLRAPGLPRTAFQKIYQD 358 Query: 361 PAAAFAPAVTLRQSLRDLVRLHGLDWQRLEALLARMRVSPALLERLPRQVSGGELQRIAL 420 PAAAFAP++ LR+SL+DLVRLHGL WQ LEALL RMR++PALL+RLPRQVSGGELQRIAL Sbjct: 359 PAAAFAPSIPLRRSLQDLVRLHGLPWQELEALLERMRIAPALLDRLPRQVSGGELQRIAL 418 Query: 421 ARVLLLQPALIFADEPTSRLDPLTQQEVIALLVEEARQAGSAVLLVTHDADIVRCVADRR 480 ARVLL++PALIFADEPTSRLDPLTQQEV+ALLVE+AR GSAVLLVTHDADIVRCVADRR Sbjct: 419 ARVLLMKPALIFADEPTSRLDPLTQQEVMALLVEQARAVGSAVLLVTHDADIVRCVADRR 478 Query: 481 LHLGPAAQ 488 L L PA Q Sbjct: 479 LTLSPAGQ 486 >ref|YP_004472881.1| ABC transporter [Pseudomonas fulva 12-X] gb|AEF20787.1| ABC transporter related protein [Pseudomonas fulva 12-X] Length = 465 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 236/474 (49%), Positives = 312/474 (65%), Gaps = 15/474 (3%) Query: 10 LRVQDLSVWHGQSALVQGIDFSIARGGVMTLLGESGSGKSLLAQAIMGNLPGSLRCSGQI 69 L + L + + LV+ + + G V+T++GE+GSGKSL AQ I+GNLP L G+I Sbjct: 5 LSTRALEIRTASAQLVEPLSIDLWPGKVLTIIGETGSGKSLFAQGIVGNLPPGLAAHGEI 64 Query: 70 EIDGQRSDAADTAVRQRGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSHPAADTQD 129 E+ G + R WGR +A+LPQEPWL+LDPTM QVAETY V +A Sbjct: 65 ELAGGLREPGQANGRHAAWGRELAVLPQEPWLSLDPTMRALDQVAETYRYVVGKSA---- 120 Query: 130 DSLRAARKAARTLAGQALASLGLEDAADKYPFMISGGMAQRVAFLATHAAGAPLLIIDEP 189 +A+R + Q LA LG+E A K+PF +SGGMAQR+AF ATHA GA ++I DEP Sbjct: 121 -------QASRQQSRQDLAQLGIEQAEAKFPFQLSGGMAQRLAFAATHAGGAKVMIADEP 173 Query: 190 TKGLDADRRGEVLALLQAAQQQDMSLLCITHDVWLARALGGELAVMLNGCLVERGPADAL 249 TKGLD+ R GEV+ LLQA Q +LL ITHD+ +AR LGGE+ +ML G ++E G A+ + Sbjct: 174 TKGLDSARIGEVIGLLQAGIAQGGALLIITHDIEVARRLGGEVMIMLKGRVIESGSAEQV 233 Query: 250 LARPQHAYTRRLLAADPACWTPPVAAGASAGPSSPVIVEVSKVAKTFGQQALFSDVSARI 309 L P+H YTRRLL ADPA W V + P +V+V +A G++ LF +S Sbjct: 234 LDAPRHEYTRRLLNADPARWPRQVPSTPGGEP----VVQVRDLAVERGERVLFEGLSFDA 289 Query: 310 HAGEIVAISGPSGAGKTTFGNIVLGLLSPDAGQVTRAPGLARTAFQKIYQDPAAAFAPAV 369 GE+V ++GPSG GK+T G+++LGL+ +G V + R AFQK+YQDP AAFAP + Sbjct: 290 RPGEVVGVTGPSGCGKSTLGDVILGLMQARSGSVAKHREAPRVAFQKLYQDPVAAFAPTL 349 Query: 370 TLRQSLRDLVRLHGLDWQRLEALLARMRVSPALLERLPRQVSGGELQRIALARVLLLQPA 429 TL + L DLV+LH LD R++ LL R+R+ LL+RLP VSGGELQR +L RVLLL P Sbjct: 350 TLGRCLADLVKLHRLDASRIDGLLHRLRLDRGLLDRLPGNVSGGELQRFSLLRVLLLDPV 409 Query: 430 LIFADEPTSRLDPLTQQEVIALLVEEARQAGSAVLLVTHDADIVRCVADRRLHL 483 IFADEP+SRLD +TQQE+I LLVE AR+ +AVLLV+HD ++ VAD+R+ L Sbjct: 410 FIFADEPSSRLDLITQQEMIELLVETARERRTAVLLVSHDEALIEAVADQRIRL 463 Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 107/232 (46%), Gaps = 31/232 (13%) Query: 7 DAALRVQDLSVWHGQSALVQGIDFSIARGGVMTLLGESGSGKSLLAQAIMGNLPGSLRCS 66 + ++V+DL+V G+ L +G+ F G V+ + G SG GKS L I+G + S Sbjct: 264 EPVVQVRDLAVERGERVLFEGLSFDARPGEVVGVTGPSGCGKSTLGDVILGLMQAR---S 320 Query: 67 GQIEIDGQRSDAADTAVRQRGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSHPAAD 126 G + + +A A ++ L Q+P A PT+T+ R +A+ +L H Sbjct: 321 GSV---AKHREAPRVAFQK---------LYQDPVAAFAPTLTLGRCLADLVKL--HRLDA 366 Query: 127 TQDDSLRAARKAARTLAGQALASLGLEDAADKYPFMISGGMAQRVAFLATHAAGAPLLII 186 ++ D L + R L D+ P +SGG QR + L + Sbjct: 367 SRIDGLLHRLRLDRGL-------------LDRLPGNVSGGELQRFSLLRVLLLDPVFIFA 413 Query: 187 DEPTKGLDADRRGEVLALL-QAAQQQDMSLLCITHDVWLARALGGELAVMLN 237 DEP+ LD + E++ LL + A+++ ++L ++HD L A+ + ++N Sbjct: 414 DEPSSRLDLITQQEMIELLVETARERRTAVLLVSHDEALIEAVADQRIRLVN 465 >ref|YP_002648488.1| ABC transporter ATP-binding protein [Erwinia pyrifoliae Ep1/96] emb|CAX55254.1| ABC transporter, ATP-binding protein [Erwinia pyrifoliae Ep1/96] emb|CAY73966.1| putative ABC transport system, ATP-binding component [Erwinia pyrifoliae DSM 12163] Length = 474 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 240/460 (52%), Positives = 307/460 (66%), Gaps = 16/460 (3%) Query: 25 VQGIDFSIARGGVMTLLGESGSGKSLLAQAIMGNLPGSLRCSGQIEIDGQRSDAADTAVR 84 VQ + F++ G TLLGESGSGKSLLAQA+ G LP L+ SG + ++GQR D A R Sbjct: 18 VQPLSFTLHAGRPFTLLGESGSGKSLLAQAVTGTLPDGLQASGALNVNGQRHDLASRPAR 77 Query: 85 QRGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSHPAADTQDDSLRAARKAARTLAG 144 WG + +LPQEPWLALDP M QVAE+Y + + AAR AR LA Sbjct: 78 SL-WGHTLGILPQEPWLALDPIMRAGDQVAESYRFLR---------GMTAAR--ARALAI 125 Query: 145 QALASLGLEDAADKYPFMISGGMAQRVAFLATHAAGAPLLIIDEPTKGLDADRRGEVLAL 204 L +LG+E AA+K P +SGGMAQRVAF A A GA +++ DEPTKGLD RR EV+ L Sbjct: 126 NDLQALGVEQAANKLPQALSGGMAQRVAFAAVRAGGAQIIVADEPTKGLDVARRDEVITL 185 Query: 205 LQAAQQQDMSLLCITHDVWLARALGGELAVMLNGCLVERGPADALLARPQHAYTRRLLAA 264 L A Q L ITHD+ LAR LGGELA+M G +VERG A +L RPQH YT+ LLAA Sbjct: 186 LLRAVQAGGGLFTITHDIELARQLGGELAIMRQGEIVERGSAQQVLTRPQHPYTQALLAA 245 Query: 265 DPACWTPPVAAGASAGPSSPVIVEVSKVAKTFGQQALFSDVSARIHAGEIVAISGPSGAG 324 DP W PV +A V++E ++K G LFS S +HAGE++ I+GPSG G Sbjct: 246 DPTRW--PVRE--TAVHHRQVVLEAHNLSKKRGGCQLFSRQSLCVHAGEVIGITGPSGCG 301 Query: 325 KTTFGNIVLGLLSPDAGQVTRAPGLARTAFQKIYQDPAAAFAPAVTLRQSLRDLVRLHGL 384 K++FG+I+LGLL+ D+G+V R P A +QKI+QDP +AFAP LRQ+L D+VR H L Sbjct: 302 KSSFGDILLGLLAADSGEVVRDPLQAAVRYQKIFQDPPSAFAPHARLRQALDDVVRRHRL 361 Query: 385 DWQRLEALLARMRVSPALLERLPRQVSGGELQRIALARVLLLQPALIFADEPTSRLDPLT 444 D QR+ L+ R+++SP LL+R P+++SGGELQR AL RVLLL P +FADEPTSRLD LT Sbjct: 362 DGQRIGQLMERLQISPLLLDRYPKEISGGELQRFALLRVLLLDPVFLFADEPTSRLDLLT 421 Query: 445 QQEVIALLVEEARQAGSAVLLVTHDADIVRCVADRRLHLG 484 QQ+ I LLVE A + A+L+V+HD ++ ++ RR+ LG Sbjct: 422 QQQTIELLVEVAAEQNCALLIVSHDEALIDRISHRRIRLG 461 >gb|ADP12911.1| ABC transporter, ATP-binding protein [Erwinia sp. Ejp617] Length = 474 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 239/460 (51%), Positives = 308/460 (66%), Gaps = 16/460 (3%) Query: 25 VQGIDFSIARGGVMTLLGESGSGKSLLAQAIMGNLPGSLRCSGQIEIDGQRSDAADTAVR 84 VQ + F++ G TLLGESGSGKSLLAQA+ G LP L+ SG + ++GQR + A R Sbjct: 17 VQPLSFTLHAGRPFTLLGESGSGKSLLAQAVTGTLPDGLQASGALNVNGQRHELASRPAR 76 Query: 85 QRGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSHPAADTQDDSLRAARKAARTLAG 144 WG + +LPQEPWLALDP M QVAE+Y + + AAR AR LA Sbjct: 77 AL-WGHTLGILPQEPWLALDPIMRAGDQVAESYRFLR---------GMTAAR--ARELAI 124 Query: 145 QALASLGLEDAADKYPFMISGGMAQRVAFLATHAAGAPLLIIDEPTKGLDADRRGEVLAL 204 L +LG+ AA+K P +SGGMAQRVAF A A GA +++ DEPTKGLD RR EV+ L Sbjct: 125 NDLQALGVAQAANKLPQALSGGMAQRVAFAAVRAGGAKIIVADEPTKGLDVTRRDEVITL 184 Query: 205 LQAAQQQDMSLLCITHDVWLARALGGELAVMLNGCLVERGPADALLARPQHAYTRRLLAA 264 L A Q L ITHD+ LAR LGGE+A+M G +VERG A +L RPQH YT+ LLAA Sbjct: 185 LLRAVQAGGGLFTITHDIELARQLGGEVAIMRQGEIVERGSAQQVLTRPQHPYTQALLAA 244 Query: 265 DPACWTPPVAAGASAGPSSPVIVEVSKVAKTFGQQALFSDVSARIHAGEIVAISGPSGAG 324 DPA W PV +A V++E ++K G LFS S R+HAGE++ I+GPSG G Sbjct: 245 DPARW--PVRE--TAVRHRQVVLEAHNLSKKRGGCQLFSRQSLRVHAGEVIGITGPSGCG 300 Query: 325 KTTFGNIVLGLLSPDAGQVTRAPGLARTAFQKIYQDPAAAFAPAVTLRQSLRDLVRLHGL 384 K++FG+I+LGLL+ D+G+V R P A +QKI+QDP +AFAP LRQ+L D+VR H L Sbjct: 301 KSSFGDILLGLLAADSGEVVRDPQQAAVRYQKIFQDPPSAFAPHARLRQALDDVVRRHRL 360 Query: 385 DWQRLEALLARMRVSPALLERLPRQVSGGELQRIALARVLLLQPALIFADEPTSRLDPLT 444 D QR+ L+ R+++SP LL+R P+++SGGELQR AL RVLLL P +FADEPTSRLD LT Sbjct: 361 DGQRIGELMERLQISPLLLDRYPKEISGGELQRFALLRVLLLDPVFLFADEPTSRLDLLT 420 Query: 445 QQEVIALLVEEARQAGSAVLLVTHDADIVRCVADRRLHLG 484 QQ+ I LLVE A + A+L+V+HD ++ ++ RR+ LG Sbjct: 421 QQQTIELLVEVAAEQNCALLIVSHDEALIDRISHRRIRLG 460 Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 24/210 (11%) Query: 285 VIVEVSKVAKTFGQQALFSDVSARIHAGEIVAISGPSGAGKTTFGNIVLGLLSPDAGQVT 344 +++++ + A + G+ + +S +HAG + G SG+GK+ V G L PD Q + Sbjct: 1 MLMDIERAAVSGGEMNV-QPLSFTLHAGRPFTLLGESGSGKSLLAQAVTGTL-PDGLQAS 58 Query: 345 RAPG-------LARTAFQKIY--------QDPAAAFAPAVTLRQSLRDLVR-LHGLDWQR 388 A LA + ++ Q+P A P + + + R L G+ R Sbjct: 59 GALNVNGQRHELASRPARALWGHTLGILPQEPWLALDPIMRAGDQVAESYRFLRGMTAAR 118 Query: 389 LEAL----LARMRVSPALLERLPRQVSGGELQRIALARVLLLQPALIFADEPTSRLDPLT 444 L L + V+ A +LP+ +SGG QR+A A V +I ADEPT LD Sbjct: 119 ARELAINDLQALGVAQA-ANKLPQALSGGMAQRVAFAAVRAGGAKIIVADEPTKGLDVTR 177 Query: 445 QQEVIALLVEEARQAGSAVLLVTHDADIVR 474 + EVI LL+ A QAG + +THD ++ R Sbjct: 178 RDEVITLLL-RAVQAGGGLFTITHDIELAR 206 >ref|YP_001926479.1| ABC transporter [Methylobacterium populi BJ001] gb|ACB81944.1| ABC transporter related [Methylobacterium populi BJ001] Length = 462 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 237/476 (49%), Positives = 298/476 (62%), Gaps = 18/476 (3%) Query: 8 AALRVQDLSVWHGQSALVQGIDFSIARGGVMTLLGESGSGKSLLAQAIMGNLPGSLRCSG 67 +ALR++DL++ LV G ++ RG +TLLGESGSGKSL+AQAIMG LP L SG Sbjct: 3 SALRIEDLTIRTADRILVSGFSATVGRGEPLTLLGESGSGKSLVAQAIMGTLPPGLLASG 62 Query: 68 QIEIDGQRSDAADTAVRQRGWGRRIALLPQEPWLALDPTMTVARQVAETYELVSHPAADT 127 +I DG D R+ WGRRI LLPQEPW ALDPTM Q+AE + V Sbjct: 63 RILFDGADLLCLDEVARRSLWGRRIGLLPQEPWTALDPTMRAGGQLAEVHRYVH------ 116 Query: 128 QDDSLRAARKAARTLAGQALASLGLEDAADKYPFMISGGMAQRVAFLATHAAGAPLLIID 187 R A LA L +GL DA YPF +SGGM QR+A HAA PLL+ D Sbjct: 117 -------GRHDADGLAAAGLGEVGLADAGGHYPFQMSGGMCQRLALAIAHAADTPLLLAD 169 Query: 188 EPTKGLDADRRGEVLALLQAAQQQDMSLLCITHDVWLARALGGELAVMLNGCLVERGPAD 247 EP+KGLD R +V+A LQ LL ITHDV LAR LGG VML+G VE GP Sbjct: 170 EPSKGLDGVLRADVVARLQREIAAGRLLLTITHDVALARVLGGTACVMLDGQAVEAGPTV 229 Query: 248 ALLARPQHAYTRRLLAADPACWTPPVAAGASAGPSSPVIVEVSKVAKTFGQQALFSDVSA 307 LL P H+YTR L+ ADP+ W P + P ++E +AK FG++ LF+D+ Sbjct: 230 RLLNAPAHSYTRALIDADPSAWPP-----RTPREPGPSVIEAMGLAKAFGRRRLFTDLDV 284 Query: 308 RIHAGEIVAISGPSGAGKTTFGNIVLGLLSPDAGQVTRAPGLARTAFQKIYQDPAAAFAP 367 ++ AGEIVA+ GPSG+GKTT GNI++G PD G+V R PG A FQK+YQDP AAF P Sbjct: 285 QVRAGEIVAVVGPSGSGKTTLGNILVGTERPDRGRVRRVPGAAPLGFQKLYQDPPAAFVP 344 Query: 368 AVTLRQSLRDLVRLHGLDWQRLEALLARMRVSPALLERLPRQVSGGELQRIALARVLLLQ 427 T+ ++L L R HG+D +R+E LLAR++++P L ++ P ++SGGELQR ALARVLLL Sbjct: 345 HQTMGRALDHLARRHGVDRERVEELLARLKLAPGLRKQRPGELSGGELQRFALARVLLLD 404 Query: 428 PALIFADEPTSRLDPLTQQEVIALLVEEARQAGSAVLLVTHDADIVRCVADRRLHL 483 P +FADE TSRLDP+ Q EV LL E + Q G A+L VTHD + +ADR + L Sbjct: 405 PVFLFADEATSRLDPVNQMEVAGLLRESSEQDGLAILFVTHDTVMAERIADRSITL 460