BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.2948.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774954.1| dipeptide/oligopeptide/nickel ABC transporte... 260 1e-67 ref|YP_546496.1| binding-protein-dependent transport systems inn... 223 3e-56 ref|YP_002943978.1| binding-protein-dependent transport systems ... 216 3e-54 ref|YP_004156406.1| binding-protein-dependent transport systems ... 214 1e-53 ref|YP_001142415.1| peptide ABC transporter permease [Aeromonas ... 207 1e-51 >ref|YP_003774954.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63046.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 260 bits (665), Expect = 1e-67, Method: Composition-based stats. Identities = 210/242 (86%), Positives = 225/242 (92%) Query: 14 PRRVTPGQWAGLLLLLMIVLFAWLGPLLIEVDPAGQQLSRFLETPSLAHPLGYDQLGRSM 73 PRR + GQW+GL+LLL++ FA LGPL+I+ DPA QQL+R+LETPSLA PLG+DQLGRSM Sbjct: 16 PRRWSAGQWSGLVLLLLVAGFALLGPLVIDTDPARQQLARYLETPSLAEPLGFDQLGRSM 75 Query: 74 LARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWIERVLAAFADAVLALPGLLLV 133 LARLAHG RLSLSLAL+SVLSAAIPG +IGLLAAWCGGW ERVLAA ADAVLALPGLLLV Sbjct: 76 LARLAHGARLSLSLALLSVLSAAIPGSLIGLLAAWCGGWTERVLAALADAVLALPGLLLV 135 Query: 134 LLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRH 193 LLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFG YIVR H Sbjct: 136 LLLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGALYIVRCH 195 Query: 194 LLPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLG 253 LLPALLPRL TL+RFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWL+ Sbjct: 196 LLPALLPRLLTLVRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLVA 255 Query: 254 AP 255 +P Sbjct: 256 SP 257 >ref|YP_546496.1| binding-protein-dependent transport systems inner membrane component [Methylobacillus flagellatus KT] gb|ABE50655.1| binding-protein-dependent transport systems inner membrane component [Methylobacillus flagellatus KT] Length = 266 Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 159/259 (61%), Positives = 196/259 (75%), Gaps = 1/259 (0%) Query: 15 RRVTPGQWAGLLLLLMIVLFAWLGPLLIEVDPAGQQLSRFLETPSLAHPLGYDQLGRSML 74 + +T + +G +LL +IVL A LGP+L+ DP Q L R L +PSLA PLG D LGRSML Sbjct: 6 QSLTLARRSGAILLTLIVLTALLGPILV-TDPVSQDLGRVLRSPSLAQPLGTDHLGRSML 64 Query: 75 ARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWIERVLAAFADAVLALPGLLLVL 134 ARL H +LS SLA++SVLSAAI GI +GLLAAW GG IE VL + ADAV+ LP LL+VL Sbjct: 65 ARLVHALQLSFSLAVLSVLSAAIIGISLGLLAAWRGGIIEAVLTSIADAVMTLPVLLVVL 124 Query: 135 LLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHL 194 L +AFA G FW LY+G+S ALWVEYFRV RA+ + L S VE++R+LGF Y++RRHL Sbjct: 125 LFSAFAQGEFWSLYIGLSFALWVEYFRVSRASIKATLVSAAVESARMLGFDRLYLLRRHL 184 Query: 195 LPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLGA 254 LPAL P + TLM FG++ A+LA++ALGFVGVGL+PPTPELGVMMIEL PYY EAPWL+ + Sbjct: 185 LPALAPVVVTLMLFGISSAILALAALGFVGVGLRPPTPELGVMMIELFPYYEEAPWLIAS 244 Query: 255 PVGVLFLTLLGLLLLSPQK 273 PV L L +L L LL +K Sbjct: 245 PVVTLGLIMLALALLGGRK 263 >ref|YP_002943978.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] gb|ACS18712.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus S110] Length = 278 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 155/258 (60%), Positives = 199/258 (77%) Query: 15 RRVTPGQWAGLLLLLMIVLFAWLGPLLIEVDPAGQQLSRFLETPSLAHPLGYDQLGRSML 74 RR + GL +L ++ +F+ GP +I +DPA Q L+ L P AH LG D LGRS+L Sbjct: 17 RREVGRRRTGLSILALVAVFSLFGPAVIGIDPARQTLADTLLPPGAAHWLGTDVLGRSVL 76 Query: 75 ARLAHGTRLSLSLALVSVLSAAIPGIVIGLLAAWCGGWIERVLAAFADAVLALPGLLLVL 134 ARLAH +LSL LAL++ ++AAIPG+++G++A+W GG IER L ADAVL++PGLLLVL Sbjct: 77 ARLAHAAQLSLGLALLAAVTAAIPGVLLGVVASWRGGRIERALVMLADAVLSVPGLLLVL 136 Query: 135 LLAAFAPGGFWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHL 194 L AA APG +W LY+G+SL+LWVEYFRV RAASR +LA V+ASRLLGFG GY++RRHL Sbjct: 137 LFAALAPGRYWALYIGLSLSLWVEYFRVARAASRPVLAGDAVQASRLLGFGSGYVLRRHL 196 Query: 195 LPALLPRLFTLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLGA 254 LPAL P L TL+ F A AVLA++ALGF+GVGLQPPTPELG+MMIE LP+Y EAPWL+ A Sbjct: 197 LPALAPVLGTLLAFSAAQAVLALAALGFIGVGLQPPTPELGLMMIEFLPHYEEAPWLIAA 256 Query: 255 PVGVLFLTLLGLLLLSPQ 272 PV +L +LG++LL+ + Sbjct: 257 PVALLMFLVLGMMLLAAE 274 >ref|YP_004156406.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] gb|ADU38295.1| binding-protein-dependent transport systems inner membrane component [Variovorax paradoxus EPS] Length = 280 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 154/247 (62%), Positives = 193/247 (78%) Query: 24 GLLLLLMIVLFAWLGPLLIEVDPAGQQLSRFLETPSLAHPLGYDQLGRSMLARLAHGTRL 83 GL++L ++ F+ GP LI +DPA Q L+ L P AH LG D LGRS+LARLAH RL Sbjct: 28 GLVILALVSAFSLFGPSLIGIDPARQTLANTLLPPGAAHWLGTDVLGRSVLARLAHAARL 87 Query: 84 SLSLALVSVLSAAIPGIVIGLLAAWCGGWIERVLAAFADAVLALPGLLLVLLLAAFAPGG 143 SL LAL++ L+AA+PG+++G+ A+W GG IER L ADAVL++PGLLLVLL AA APG Sbjct: 88 SLGLALLAALTAAVPGVLLGVAASWRGGRIERALVMLADAVLSVPGLLLVLLFAALAPGQ 147 Query: 144 FWPLYVGISLALWVEYFRVVRAASRILLASPQVEASRLLGFGPGYIVRRHLLPALLPRLF 203 W LY+G+SL+LWVEYFRV RAASR +LAS V+ASRLLGFG GY++RRHLLPAL P L Sbjct: 148 HWALYIGLSLSLWVEYFRVCRAASRQVLASDAVQASRLLGFGTGYVLRRHLLPALAPVLG 207 Query: 204 TLMRFGLAGAVLAMSALGFVGVGLQPPTPELGVMMIELLPYYREAPWLLGAPVGVLFLTL 263 TL+ F A AVLA++ALGF+GVGLQPPTPELG+MM E LP+Y EAPWL+ APV +L + Sbjct: 208 TLLAFSAAQAVLALAALGFIGVGLQPPTPELGLMMTEFLPHYEEAPWLIAAPVALLMAVV 267 Query: 264 LGLLLLS 270 LG++L++ Sbjct: 268 LGMMLVA 274 >ref|YP_001142415.1| peptide ABC transporter permease [Aeromonas salmonicida subsp. salmonicida A449] gb|ABO90667.1| ABC-type dipeptide/oligopeptide/nickel transporter, permease component [Aeromonas salmonicida subsp. salmonicida A449] Length = 268 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 141/219 (64%), Positives = 170/219 (77%) Query: 41 LIEVDPAGQQLSRFLETPSLAHPLGYDQLGRSMLARLAHGTRLSLSLALVSVLSAAIPGI 100 LI DPA Q L FL PS PLG DQLGRS++ARLA TRLSL L ++ V++AA+ G Sbjct: 24 LIWPDPAAQDLVNFLADPSWQEPLGRDQLGRSLMARLAAATRLSLLLGILCVMTAALLGS 83 Query: 101 VIGLLAAWCGGWIERVLAAFADAVLALPGLLLVLLLAAFAPGGFWPLYVGISLALWVEYF 160 ++G L+AW GGW + +L + AD VLALP LLLVLL +A A GGF LY+G+++A WVEY+ Sbjct: 84 LLGWLSAWRGGWADGLLRSLADGVLALPSLLLVLLFSAMAQGGFAILYLGLAMAQWVEYY 143 Query: 161 RVVRAASRILLASPQVEASRLLGFGPGYIVRRHLLPALLPRLFTLMRFGLAGAVLAMSAL 220 RVVRA SR LLASPQVEASRLLGFG GYIVRRHL L P+L T+M FGLAGA+L +S L Sbjct: 144 RVVRARSRTLLASPQVEASRLLGFGNGYIVRRHLWHELAPQLLTMMAFGLAGAILTLSTL 203 Query: 221 GFVGVGLQPPTPELGVMMIELLPYYREAPWLLGAPVGVL 259 GFVGVG+QPPTPELG+MM E LP+Y+EAP LL AP+ V+ Sbjct: 204 GFVGVGIQPPTPELGLMMTEALPHYQEAPRLLLAPIMVM 242